Wall clock time and date at job start Wed Apr 1 2020 02:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38253 * 120.00239 * 2 1 4 4 C 1.38218 * 120.00391 * 179.97438 * 3 2 1 5 5 C 1.38254 * 119.99619 * 359.97438 * 4 3 2 6 6 C 1.38215 * 120.00274 * 359.97438 * 5 4 3 7 7 C 1.50692 * 120.00053 * 180.02562 * 6 5 4 8 8 H 1.09004 * 115.55310 * 154.28222 * 7 6 5 9 9 C 1.53004 * 117.50072 * 8.60856 * 7 6 5 10 10 C 1.53004 * 60.00088 * 252.51022 * 9 7 6 11 11 H 1.08996 * 117.49707 * 107.48232 * 10 9 7 12 12 C 1.50700 * 117.49990 * 252.51243 * 10 9 7 13 13 O 1.21278 * 120.00250 * 68.61724 * 12 10 9 14 14 N 1.34772 * 119.99690 * 248.62452 * 12 10 9 15 15 C 1.46500 * 119.99765 * 180.02562 * 14 12 10 16 16 C 1.53002 * 109.47057 * 179.97438 * 15 14 12 17 17 H 1.08996 * 109.49833 * 55.05892 * 16 15 14 18 18 C 1.53046 * 109.49842 * 175.16031 * 16 15 14 19 19 C 1.53043 * 109.53499 * 181.31598 * 18 16 15 20 20 C 1.53196 * 109.31305 * 298.63061 * 19 18 16 21 21 N 1.46921 * 108.77254 * 54.63899 * 20 19 18 22 22 C 1.36943 * 120.62947 * 126.36815 * 21 20 19 23 23 H 1.07994 * 119.99826 * 331.85459 * 22 21 20 24 24 C 1.38815 * 119.99870 * 151.85696 * 22 21 20 25 25 N 1.31613 * 119.99937 * 343.07617 * 24 22 21 26 26 Si 1.86799 * 119.99616 * 163.07331 * 24 22 21 27 27 H 1.48496 * 109.47155 * 60.00142 * 26 24 22 28 28 H 1.48506 * 109.46959 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47263 * 299.99896 * 26 24 22 30 30 C 1.46926 * 118.74028 * 306.39230 * 21 20 19 31 31 C 1.38208 * 119.99892 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.46737 * 90.00378 * 1 2 3 33 33 H 1.08997 * 109.47424 * 210.00235 * 1 2 3 34 34 H 1.08998 * 109.47242 * 330.00663 * 1 2 3 35 35 H 1.08005 * 120.00027 * 359.97438 * 3 2 1 36 36 H 1.08001 * 120.00021 * 179.97438 * 4 3 2 37 37 H 1.07998 * 119.99562 * 179.72713 * 5 4 3 38 38 H 1.08997 * 117.49640 * 0.02562 * 9 7 6 39 39 H 1.08996 * 117.49873 * 145.01950 * 9 7 6 40 40 H 0.96998 * 120.00537 * 359.97438 * 14 12 10 41 41 H 1.09000 * 109.47417 * 299.99224 * 15 14 12 42 42 H 1.08997 * 109.47317 * 59.99538 * 15 14 12 43 43 H 1.09002 * 109.45749 * 301.33156 * 18 16 15 44 44 H 1.08994 * 109.45703 * 61.29543 * 18 16 15 45 45 H 1.09000 * 109.49501 * 178.68101 * 19 18 16 46 46 H 1.09000 * 109.49788 * 58.58887 * 19 18 16 47 47 H 1.08998 * 109.58509 * 294.85266 * 20 19 18 48 48 H 1.08999 * 109.69789 * 174.49647 * 20 19 18 49 49 H 0.97001 * 119.99806 * 180.02562 * 25 24 22 50 50 H 1.09001 * 109.58438 * 293.81687 * 30 21 20 51 51 H 1.09008 * 109.70144 * 173.46936 * 30 21 20 52 52 H 1.08001 * 120.00239 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5806 -1.1970 0.0027 7 6 4.3341 -2.5020 0.0044 8 1 3.8017 -3.3518 0.4319 9 6 5.8493 -2.4427 0.2081 10 6 5.2752 -2.7760 -1.1704 11 1 5.3493 -2.0123 -1.9445 12 6 5.3951 -4.2002 -1.6484 13 8 4.7587 -5.0779 -1.1049 14 7 6.2098 -4.4985 -2.6797 15 6 6.3260 -5.8829 -3.1447 16 6 7.3068 -5.9464 -4.3173 17 1 8.2591 -5.5078 -4.0193 18 6 7.5212 -7.4057 -4.7255 19 6 8.5272 -7.4726 -5.8769 20 6 7.9686 -6.7104 -7.0827 21 7 7.6239 -5.3458 -6.6611 22 6 8.1225 -4.2613 -7.3323 23 1 9.0717 -4.3317 -7.8426 24 6 7.4079 -3.0714 -7.3567 25 7 6.1310 -3.0641 -7.0379 26 14 8.2588 -1.4808 -7.8418 27 1 8.7936 -1.6064 -9.2214 28 1 7.2837 -0.3620 -7.7894 29 1 9.3751 -1.2096 -6.9009 30 6 6.7345 -5.1669 -5.5054 31 6 2.1980 -1.1969 -0.0005 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3634 -0.8899 0.5138 34 1 -0.3633 0.8900 0.5137 35 1 1.6583 2.1326 -0.0004 36 1 4.1205 2.1326 0.0001 37 1 5.3517 0.0000 -0.0024 38 1 6.3011 -1.4598 0.3412 39 1 6.3138 -3.2535 0.7693 40 1 6.7187 -3.7965 -3.1146 41 1 6.6908 -6.5100 -2.3313 42 1 5.3488 -6.2404 -3.4691 43 1 7.9054 -7.9681 -3.8745 44 1 6.5726 -7.8360 -5.0466 45 1 8.6971 -8.5137 -6.1515 46 1 9.4683 -7.0201 -5.5644 47 1 7.0761 -7.2151 -7.4524 48 1 8.7193 -6.6704 -7.8719 49 1 5.6316 -2.2327 -7.0553 50 1 5.7413 -5.5456 -5.7466 51 1 6.6703 -4.1087 -5.2515 52 1 1.6580 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600823349.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:04 Heat of formation + Delta-G solvation = 13.598757 kcal Electronic energy + Delta-G solvation = -29407.426282 eV Core-core repulsion = 25565.051151 eV Total energy + Delta-G solvation = -3842.375131 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -40.27932 -39.26789 -37.87185 -36.49399 -34.58027 -33.06793 -32.67016 -31.13191 -30.74088 -29.82661 -27.09464 -26.12753 -25.30403 -23.92805 -23.38184 -22.23773 -22.08951 -20.80328 -20.15813 -19.62829 -18.97848 -17.45384 -16.87193 -16.60932 -15.76127 -15.36482 -15.22707 -15.09659 -14.69379 -14.19192 -14.05876 -13.94966 -13.92344 -13.61340 -13.37890 -13.26798 -12.90271 -12.62481 -12.43994 -12.36230 -12.32703 -12.20109 -12.14471 -11.97920 -11.42662 -11.26050 -11.07390 -11.02940 -10.76670 -10.70629 -10.52163 -10.51724 -10.26927 -10.19572 -9.95022 -9.76315 -9.53305 -9.44980 -8.87184 -8.72141 -8.61855 -8.51145 -6.70028 -5.82789 -3.25633 1.15703 1.26058 2.68440 3.33986 3.34740 3.40574 3.41307 3.56047 3.97716 4.42598 4.45270 4.62565 4.72780 4.74971 4.83925 4.96930 5.00434 5.13819 5.17668 5.23545 5.30449 5.31356 5.40998 5.50393 5.53854 5.57057 5.57786 5.59534 5.64648 5.79164 5.84348 5.88876 5.96269 5.97981 6.02339 6.10180 6.27823 6.28662 6.34079 6.40317 6.44654 6.48297 6.52006 6.64129 6.73886 6.81585 6.84239 6.87741 6.99541 7.28540 7.58361 7.75075 7.81906 8.40447 8.47744 9.17151 9.80422 10.38112 11.25082 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010269 B = 0.002739 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.001385 B =10220.820624 C =11947.359149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.126 4.126 4 C -0.114 4.114 5 C -0.125 4.125 6 C -0.046 4.046 7 C -0.085 4.085 8 H 0.126 0.874 9 C -0.145 4.145 10 C -0.175 4.175 11 H 0.127 0.873 12 C 0.542 3.458 13 O -0.552 6.552 14 N -0.713 5.713 15 C 0.131 3.869 16 C -0.128 4.128 17 H 0.069 0.931 18 C -0.100 4.100 19 C -0.133 4.133 20 C 0.143 3.857 21 N -0.592 5.592 22 C -0.253 4.253 23 H 0.065 0.935 24 C 0.003 3.997 25 N -0.901 5.901 26 Si 0.900 3.100 27 H -0.283 1.283 28 H -0.290 1.290 29 H -0.284 1.284 30 C 0.179 3.821 31 C -0.110 4.110 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.407 0.593 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.047 0.953 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.057 0.943 47 H 0.017 0.983 48 H 0.052 0.948 49 H 0.254 0.746 50 H 0.018 0.982 51 H 0.087 0.913 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.415 4.057 15.691 16.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.085 4.085 3 C -0.144 4.144 4 C -0.132 4.132 5 C -0.143 4.143 6 C -0.046 4.046 7 C -0.103 4.103 8 H 0.144 0.856 9 C -0.183 4.183 10 C -0.196 4.196 11 H 0.145 0.855 12 C 0.328 3.672 13 O -0.431 6.431 14 N -0.363 5.363 15 C 0.007 3.993 16 C -0.148 4.148 17 H 0.088 0.912 18 C -0.138 4.138 19 C -0.172 4.172 20 C 0.017 3.983 21 N -0.315 5.315 22 C -0.383 4.383 23 H 0.082 0.918 24 C -0.196 4.196 25 N -0.546 5.546 26 Si 0.730 3.270 27 H -0.209 1.209 28 H -0.216 1.216 29 H -0.210 1.210 30 C 0.053 3.947 31 C -0.128 4.128 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.242 0.758 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.035 0.965 48 H 0.071 0.929 49 H 0.064 0.936 50 H 0.036 0.964 51 H 0.105 0.895 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.979 3.560 16.019 17.149 hybrid contribution 0.660 1.229 -0.684 1.554 sum -4.319 4.789 15.335 16.636 Atomic orbital electron populations 1.20796 0.91190 1.02658 1.02489 1.19902 0.96095 0.93069 0.99468 1.21021 0.94313 0.97433 1.01664 1.21097 0.94293 0.97884 0.99893 1.21060 1.00073 0.91929 1.01238 1.19118 0.93315 0.92958 0.99185 1.21050 0.91793 0.96726 1.00742 0.85615 1.23111 0.95428 1.03557 0.96158 1.22381 1.07110 0.96432 0.93640 0.85512 1.19506 0.78942 0.88939 0.79783 1.90656 1.45742 1.49120 1.57575 1.45962 1.45477 1.11134 1.33732 1.21395 1.00173 0.81697 0.96031 1.22141 0.98562 0.97662 0.96454 0.91231 1.21335 0.99396 0.95496 0.97607 1.21991 0.98687 0.99068 0.97464 1.20930 0.96960 0.86636 0.93791 1.44025 1.56356 1.00179 1.30909 1.19149 1.00511 0.89701 1.28915 0.91766 1.25036 0.94823 0.99081 1.00618 1.70027 1.05880 1.26073 1.52574 0.86412 0.78651 0.83351 0.78635 1.20877 1.21616 1.21021 1.20793 0.90856 0.99517 0.83522 1.20886 0.93362 0.97795 1.00725 0.91044 0.91493 0.91640 0.86255 0.86041 0.85849 0.87483 0.87800 0.75801 0.92394 0.91757 0.93430 0.92482 0.93070 0.92433 0.96522 0.92912 0.93573 0.96374 0.89463 0.85870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.00 0.36 -0.55 16 2 C -0.09 -0.89 5.88 -104.63 -0.62 -1.50 16 3 C -0.13 -1.25 9.70 -39.58 -0.38 -1.63 16 4 C -0.11 -1.13 10.05 -39.58 -0.40 -1.53 16 5 C -0.13 -1.33 9.30 -39.58 -0.37 -1.70 16 6 C -0.05 -0.54 5.61 -104.62 -0.59 -1.12 16 7 C -0.08 -1.02 5.55 -91.77 -0.51 -1.53 16 8 H 0.13 1.63 7.67 -51.93 -0.40 1.23 16 9 C -0.15 -1.53 9.56 -26.73 -0.26 -1.78 16 10 C -0.17 -2.27 5.82 -91.77 -0.53 -2.81 16 11 H 0.13 1.61 8.14 -51.93 -0.42 1.19 16 12 C 0.54 8.75 7.61 -10.99 -0.08 8.67 16 13 O -0.55 -10.48 16.26 5.56 0.09 -10.39 16 14 N -0.71 -11.45 5.33 -60.30 -0.32 -11.77 16 15 C 0.13 2.18 5.07 -4.04 -0.02 2.16 16 16 C -0.13 -2.28 2.38 -90.50 -0.22 -2.49 16 17 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 18 C -0.10 -1.64 5.17 -26.69 -0.14 -1.77 16 19 C -0.13 -2.25 6.08 -26.61 -0.16 -2.41 16 20 C 0.14 2.96 6.52 -3.71 -0.02 2.93 16 21 N -0.59 -14.41 2.99 -172.32 -0.52 -14.93 16 22 C -0.25 -6.75 9.58 -15.06 -0.14 -6.89 16 23 H 0.06 1.69 7.88 -52.49 -0.41 1.28 16 24 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 25 N -0.90 -25.25 11.19 55.49 0.62 -24.63 16 26 Si 0.90 21.01 29.59 -169.99 -5.03 15.98 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 30 C 0.18 4.04 4.39 -3.71 -0.02 4.03 16 31 C -0.11 -1.26 9.39 -39.58 -0.37 -1.63 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 34 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 35 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.12 1.12 6.03 -52.49 -0.32 0.80 16 38 H 0.11 0.92 6.18 -51.93 -0.32 0.60 16 39 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.41 6.35 7.69 -40.82 -0.31 6.03 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 49 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 50 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.09 2.14 5.26 -51.92 -0.27 1.86 16 52 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 414.27 15.07 6.24 6.24 Total: -1.00 -30.85 414.27 -12.23 -43.08 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -8.76 Total: 7.98 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -4.55 Total: -11.57 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.22 Total: -51.33 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -30.85 -12.23 -43.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600823349.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.682 kcal (2) G-P(sol) polarization free energy of solvation -30.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds