Wall clock time and date at job start Wed Apr 1 2020 02:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38259 * 119.99580 * 2 1 4 4 C 1.38217 * 119.99672 * 180.02562 * 3 2 1 5 5 C 1.38256 * 119.99952 * 359.95133 * 4 3 2 6 6 C 1.38217 * 120.00205 * 0.02562 * 5 4 3 7 7 C 1.50691 * 120.00054 * 179.97438 * 6 5 4 8 8 H 1.09005 * 115.56317 * 154.30818 * 7 6 5 9 9 C 1.53077 * 117.49673 * 8.60320 * 7 6 5 10 10 C 1.53001 * 59.98408 * 252.50907 * 9 7 6 11 11 H 1.09004 * 117.49565 * 107.49311 * 10 9 7 12 12 C 1.50700 * 117.50155 * 252.49705 * 10 9 7 13 13 O 1.21278 * 119.99700 * 68.74193 * 12 10 9 14 14 N 1.34770 * 119.99786 * 248.74653 * 12 10 9 15 15 C 1.46503 * 120.00037 * 179.97438 * 14 12 10 16 16 C 1.52993 * 109.47242 * 179.97438 * 15 14 12 17 17 H 1.09001 * 109.52807 * 305.08451 * 16 15 14 18 18 C 1.53041 * 109.50142 * 185.00027 * 16 15 14 19 19 C 1.53030 * 109.54176 * 178.68396 * 18 16 15 20 20 C 1.53200 * 109.31420 * 61.36920 * 19 18 16 21 21 N 1.46924 * 108.76850 * 305.36679 * 20 19 18 22 22 C 1.36946 * 120.62561 * 233.58149 * 21 20 19 23 23 H 1.08001 * 119.99718 * 151.83661 * 22 21 20 24 24 C 1.38810 * 120.00117 * 331.83647 * 22 21 20 25 25 N 1.31622 * 119.99791 * 343.08068 * 24 22 21 26 26 Si 1.86800 * 120.00151 * 163.07926 * 24 22 21 27 27 H 1.48495 * 109.47137 * 89.99695 * 26 24 22 28 28 H 1.48503 * 109.46982 * 210.00044 * 26 24 22 29 29 H 1.48498 * 109.46975 * 330.00070 * 26 24 22 30 30 C 1.46925 * 118.74730 * 53.60866 * 21 20 19 31 31 C 1.38207 * 120.00217 * 180.22820 * 2 1 3 32 32 H 1.08996 * 109.46928 * 90.00074 * 1 2 3 33 33 H 1.08994 * 109.46990 * 210.00428 * 1 2 3 34 34 H 1.09000 * 109.47023 * 330.00204 * 1 2 3 35 35 H 1.07995 * 120.00302 * 359.97438 * 3 2 1 36 36 H 1.07998 * 120.00191 * 179.97438 * 4 3 2 37 37 H 1.08005 * 120.00037 * 180.02562 * 5 4 3 38 38 H 1.09000 * 117.51225 * 145.03326 * 9 7 6 39 39 H 1.09004 * 117.48981 * 359.97438 * 9 7 6 40 40 H 0.97002 * 120.00433 * 0.02562 * 14 12 10 41 41 H 1.08999 * 109.46555 * 60.00035 * 15 14 12 42 42 H 1.09001 * 109.47218 * 300.00229 * 15 14 12 43 43 H 1.09002 * 109.45393 * 58.66162 * 18 16 15 44 44 H 1.09007 * 109.45829 * 298.71129 * 18 16 15 45 45 H 1.09004 * 109.50051 * 181.31838 * 19 18 16 46 46 H 1.08999 * 109.50304 * 301.41712 * 19 18 16 47 47 H 1.08997 * 109.58435 * 65.15005 * 20 19 18 48 48 H 1.08991 * 109.58638 * 185.57437 * 20 19 18 49 49 H 0.96999 * 119.99934 * 180.02562 * 25 24 22 50 50 H 1.08997 * 109.58588 * 66.17202 * 30 21 20 51 51 H 1.08997 * 109.58822 * 186.46276 * 30 21 20 52 52 H 1.08001 * 119.99993 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0001 6 6 3.5807 -1.1969 0.0004 7 6 4.3342 -2.5019 0.0004 8 1 3.8022 -3.3523 0.4270 9 6 5.8504 -2.4426 0.2029 10 6 5.2747 -2.7747 -1.1752 11 1 5.3480 -2.0103 -1.9488 12 6 5.3944 -4.1984 -1.6547 13 8 4.7571 -5.0764 -1.1127 14 7 6.2098 -4.4958 -2.6857 15 6 6.3267 -5.8799 -3.1516 16 6 7.3081 -5.9424 -4.3235 17 1 6.9922 -5.2468 -5.1009 18 6 7.3367 -7.3636 -4.8907 19 6 8.2935 -7.4194 -6.0837 20 6 9.7069 -7.0567 -5.6171 21 7 9.6614 -5.7533 -4.9405 22 6 10.4903 -4.7354 -5.3307 23 1 10.1867 -3.7083 -5.1914 24 6 11.7206 -5.0236 -5.9052 25 7 12.2403 -6.2263 -5.7789 26 14 12.6386 -3.7047 -6.8577 27 1 13.5254 -2.9535 -5.9334 28 1 13.4570 -4.3412 -7.9210 29 1 11.6632 -2.7711 -7.4758 30 6 8.7103 -5.5629 -3.8369 31 6 2.1982 -1.1969 -0.0048 32 1 -0.3633 0.0000 -1.0276 33 1 -0.3633 -0.8899 0.5139 34 1 -0.3633 0.8900 0.5138 35 1 1.6583 2.1327 -0.0004 36 1 4.1205 2.1327 -0.0010 37 1 5.3518 0.0001 -0.0001 38 1 6.3157 -3.2539 0.7628 39 1 6.3022 -1.4596 0.3357 40 1 6.7199 -3.7937 -3.1190 41 1 5.3497 -6.2374 -3.4768 42 1 6.6909 -6.5075 -2.3382 43 1 6.3349 -7.6452 -5.2151 44 1 7.6765 -8.0554 -4.1199 45 1 8.2956 -8.4262 -6.5017 46 1 7.9683 -6.7099 -6.8445 47 1 10.0689 -7.8159 -4.9239 48 1 10.3723 -6.9984 -6.4784 49 1 13.1002 -6.4276 -6.1801 50 1 8.9911 -6.2003 -2.9985 51 1 8.7201 -4.5194 -3.5221 52 1 1.6582 -2.1322 -0.0089 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600823351.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:08 Heat of formation + Delta-G solvation = 13.871701 kcal Electronic energy + Delta-G solvation = -28863.797728 eV Core-core repulsion = 25021.434432 eV Total energy + Delta-G solvation = -3842.363295 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.43451 -39.42977 -37.93560 -36.62287 -34.77263 -33.00931 -32.79461 -31.15825 -30.47350 -30.34157 -27.22373 -26.16857 -25.30189 -24.04104 -23.49766 -22.34476 -22.07682 -20.93284 -20.32621 -19.76691 -19.02165 -17.62703 -16.94190 -16.59892 -15.90759 -15.49235 -15.36798 -15.12315 -14.83159 -14.39296 -14.19144 -14.09676 -13.95638 -13.65045 -13.44277 -13.41452 -12.80340 -12.75841 -12.57581 -12.48320 -12.35604 -12.27340 -12.18965 -12.08325 -11.55945 -11.30465 -11.20669 -11.04348 -10.87817 -10.71638 -10.65466 -10.51421 -10.26157 -10.19712 -9.98171 -9.86155 -9.56865 -9.44016 -9.01219 -8.92633 -8.75882 -8.48931 -6.69216 -5.81554 -3.24546 1.01735 1.12196 2.51228 3.14948 3.34494 3.41654 3.41890 3.43605 3.84274 4.27867 4.45605 4.48788 4.58983 4.61673 4.70242 4.84235 4.86148 4.99306 5.05279 5.10395 5.17614 5.27455 5.28624 5.39520 5.42438 5.45236 5.47172 5.52954 5.60483 5.71668 5.75600 5.81609 5.84194 5.88652 5.94438 5.99245 6.21089 6.22205 6.31234 6.31706 6.36095 6.38348 6.51527 6.57687 6.68832 6.74035 6.76085 6.84265 6.94768 7.38021 7.59943 7.65327 7.75946 8.28327 8.42129 9.18270 9.81820 10.38813 11.26739 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013873 B = 0.002055 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.764100 B =13620.519059 C =14911.897811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.126 4.126 4 C -0.113 4.113 5 C -0.125 4.125 6 C -0.047 4.047 7 C -0.085 4.085 8 H 0.126 0.874 9 C -0.143 4.143 10 C -0.176 4.176 11 H 0.125 0.875 12 C 0.541 3.459 13 O -0.548 6.548 14 N -0.718 5.718 15 C 0.127 3.873 16 C -0.117 4.117 17 H 0.073 0.927 18 C -0.100 4.100 19 C -0.142 4.142 20 C 0.169 3.831 21 N -0.591 5.591 22 C -0.254 4.254 23 H 0.064 0.936 24 C 0.002 3.998 25 N -0.901 5.901 26 Si 0.901 3.099 27 H -0.287 1.287 28 H -0.289 1.289 29 H -0.280 1.280 30 C 0.154 3.846 31 C -0.110 4.110 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.404 0.596 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.047 0.953 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.054 0.946 47 H 0.017 0.983 48 H 0.086 0.914 49 H 0.254 0.746 50 H 0.018 0.982 51 H 0.050 0.950 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.539 10.864 10.578 24.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.144 4.144 4 C -0.131 4.131 5 C -0.143 4.143 6 C -0.047 4.047 7 C -0.104 4.104 8 H 0.144 0.856 9 C -0.180 4.180 10 C -0.197 4.197 11 H 0.143 0.857 12 C 0.327 3.673 13 O -0.426 6.426 14 N -0.368 5.368 15 C 0.004 3.996 16 C -0.138 4.138 17 H 0.091 0.909 18 C -0.138 4.138 19 C -0.181 4.181 20 C 0.044 3.956 21 N -0.314 5.314 22 C -0.383 4.383 23 H 0.082 0.918 24 C -0.196 4.196 25 N -0.545 5.545 26 Si 0.731 3.269 27 H -0.214 1.214 28 H -0.216 1.216 29 H -0.205 1.205 30 C 0.027 3.973 31 C -0.128 4.128 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.239 0.761 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.035 0.965 48 H 0.104 0.896 49 H 0.064 0.936 50 H 0.036 0.964 51 H 0.069 0.931 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -19.802 10.154 10.876 24.769 hybrid contribution 0.896 0.965 -0.850 1.567 sum -18.906 11.119 10.026 24.116 Atomic orbital electron populations 1.20799 0.91173 1.02770 1.02415 1.19912 0.96097 0.93066 0.99478 1.21037 0.94326 0.97455 1.01593 1.21113 0.94280 0.97929 0.99810 1.21085 1.00147 0.91900 1.01174 1.19124 0.93298 0.92962 0.99293 1.21077 0.91957 0.96752 1.00605 0.85578 1.23151 0.95230 1.03807 0.95827 1.22358 1.07493 0.96122 0.93763 0.85717 1.19552 0.78997 0.89049 0.79683 1.90677 1.45727 1.49074 1.57106 1.45998 1.45415 1.11105 1.34312 1.21471 0.99318 0.81783 0.97072 1.21951 0.97136 0.98582 0.96136 0.90877 1.21341 0.98634 0.95342 0.98463 1.22173 0.99280 0.99730 0.96918 1.20794 0.91485 0.86001 0.97363 1.44036 1.41303 1.11532 1.34489 1.19134 0.95740 0.87215 1.36234 0.91809 1.25053 0.96004 0.96736 1.01848 1.70036 1.17813 1.20404 1.46286 0.86319 0.79604 0.81167 0.79802 1.21397 1.21551 1.20508 1.20895 0.87590 0.98253 0.90541 1.20883 0.93351 0.97782 1.00810 0.91119 0.91462 0.91578 0.86222 0.85980 0.85758 0.87576 0.87337 0.76075 0.92011 0.91594 0.93456 0.92478 0.93178 0.92758 0.96450 0.89583 0.93616 0.96405 0.93129 0.85895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.01 36.01 0.36 -0.35 16 2 C -0.09 -0.73 5.88 -104.62 -0.62 -1.34 16 3 C -0.13 -1.02 9.70 -39.58 -0.38 -1.40 16 4 C -0.11 -0.92 10.05 -39.58 -0.40 -1.32 16 5 C -0.13 -1.10 9.30 -39.58 -0.37 -1.47 16 6 C -0.05 -0.46 5.61 -104.63 -0.59 -1.04 16 7 C -0.09 -0.88 5.56 -91.73 -0.51 -1.39 16 8 H 0.13 1.44 7.67 -51.93 -0.40 1.04 16 9 C -0.14 -1.33 9.57 -26.69 -0.26 -1.58 16 10 C -0.18 -1.88 5.82 -91.77 -0.53 -2.41 16 11 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 12 C 0.54 7.48 7.61 -10.99 -0.08 7.39 16 13 O -0.55 -9.39 16.26 5.56 0.09 -9.30 16 14 N -0.72 -9.55 5.33 -60.30 -0.32 -9.87 16 15 C 0.13 1.85 5.07 -4.04 -0.02 1.83 16 16 C -0.12 -1.91 2.37 -90.50 -0.21 -2.12 16 17 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 18 C -0.10 -1.63 5.17 -26.69 -0.14 -1.77 16 19 C -0.14 -2.65 6.08 -26.61 -0.16 -2.81 16 20 C 0.17 3.97 5.30 -3.71 -0.02 3.95 16 21 N -0.59 -14.37 2.99 -172.32 -0.52 -14.88 16 22 C -0.25 -6.77 9.58 -15.06 -0.14 -6.91 16 23 H 0.06 1.65 7.89 -52.49 -0.41 1.24 16 24 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 25 N -0.90 -25.85 11.20 55.49 0.62 -25.23 16 26 Si 0.90 21.29 29.59 -169.99 -5.03 16.26 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 30 C 0.15 3.06 5.60 -3.71 -0.02 3.04 16 31 C -0.11 -1.05 9.39 -39.59 -0.37 -1.42 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 34 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 35 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.12 0.92 6.02 -52.48 -0.32 0.60 16 38 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.11 0.80 6.18 -51.93 -0.32 0.48 16 40 H 0.40 4.83 7.71 -40.82 -0.31 4.52 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.09 2.27 6.06 -51.93 -0.31 1.95 16 49 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 50 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 51 H 0.05 0.96 7.15 -51.93 -0.37 0.59 16 52 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 414.30 15.07 6.24 6.24 Total: -1.00 -31.38 414.30 -12.23 -43.61 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -8.77 Total: 4.32 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -4.55 Total: -11.15 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: -0.22 Total: -49.99 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.30 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -31.38 -12.23 -43.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600823351.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.483 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds