Wall clock time and date at job start Wed Apr 1 2020 02:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 119.99809 * 2 1 4 4 C 1.38212 * 120.00281 * 180.27578 * 3 2 1 5 5 C 1.38255 * 119.99437 * 359.74592 * 4 3 2 6 6 C 1.38215 * 120.00315 * 359.97438 * 5 4 3 7 7 C 1.38214 * 120.00382 * 179.74860 * 2 1 3 8 8 C 1.50697 * 119.99637 * 359.97438 * 7 2 1 9 9 C 1.50694 * 109.47698 * 84.72768 * 8 7 2 10 10 O 1.21286 * 119.99542 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00449 * 179.97438 * 9 8 7 12 12 C 1.47083 * 120.88332 * 179.97438 * 11 9 8 13 13 C 1.53238 * 108.52248 * 231.16266 * 12 11 9 14 14 N 1.46902 * 109.33846 * 306.17192 * 13 12 11 15 15 C 1.46904 * 110.99767 * 187.25710 * 14 13 12 16 16 C 1.52997 * 109.47104 * 160.45974 * 15 14 13 17 17 C 1.50707 * 115.55057 * 61.43396 * 16 15 14 18 18 H 1.07999 * 119.99887 * 232.37857 * 17 16 15 19 19 C 1.37881 * 119.99620 * 52.37741 * 17 16 15 20 20 N 1.31508 * 120.00290 * 5.69627 * 19 17 16 21 21 Si 1.86801 * 119.99449 * 185.96815 * 19 17 16 22 22 H 1.48498 * 109.47345 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46757 * 120.00204 * 21 19 17 24 24 H 1.48500 * 109.47334 * 239.99935 * 21 19 17 25 25 C 1.52995 * 117.49713 * 207.10366 * 16 15 14 26 26 C 1.53002 * 117.49827 * 275.76515 * 16 15 14 27 27 C 1.46890 * 111.27176 * 63.10230 * 14 13 12 28 28 C 1.47080 * 120.88109 * 359.97374 * 11 9 8 29 29 H 1.09005 * 109.46937 * 270.25159 * 1 2 3 30 30 H 1.08995 * 109.47514 * 30.25159 * 1 2 3 31 31 H 1.08996 * 109.47100 * 150.25445 * 1 2 3 32 32 H 1.08007 * 120.00449 * 0.04678 * 3 2 1 33 33 H 1.07995 * 120.00373 * 179.77069 * 4 3 2 34 34 H 1.08000 * 119.99891 * 179.97438 * 5 4 3 35 35 H 1.08004 * 119.99952 * 179.97438 * 6 5 4 36 36 H 1.09009 * 109.47474 * 324.72092 * 8 7 2 37 37 H 1.09007 * 109.47138 * 204.73098 * 8 7 2 38 38 H 1.08993 * 109.63156 * 111.45097 * 12 11 9 39 39 H 1.09008 * 109.78607 * 350.96722 * 12 11 9 40 40 H 1.08995 * 109.49237 * 186.20722 * 13 12 11 41 41 H 1.09004 * 109.49425 * 66.12852 * 13 12 11 42 42 H 1.08994 * 109.47621 * 40.45539 * 15 14 13 43 43 H 1.09004 * 109.46666 * 280.45375 * 15 14 13 44 44 H 0.97005 * 119.99817 * 184.96490 * 20 19 17 45 45 H 1.09003 * 117.49778 * 215.00209 * 25 16 15 46 46 H 1.09001 * 117.50124 * 0.02562 * 25 16 15 47 47 H 1.08995 * 117.49548 * 359.97438 * 26 16 15 48 48 H 1.08999 * 117.49548 * 144.97418 * 26 16 15 49 49 H 1.09005 * 109.49402 * 56.85405 * 27 14 13 50 50 H 1.08999 * 109.49775 * 176.93421 * 27 14 13 51 51 H 1.09001 * 109.62915 * 248.54583 * 28 11 9 52 52 H 1.09002 * 109.63128 * 8.93633 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1975 -0.0058 5 6 4.2716 0.0001 -0.0062 6 6 3.5806 -1.1969 -0.0004 7 6 2.1982 -1.1969 0.0053 8 6 1.4447 -2.5020 0.0116 9 6 1.0798 -2.8784 -1.4013 10 8 1.3998 -2.1575 -2.3227 11 7 0.3981 -4.0159 -1.6410 12 6 0.0315 -4.4017 -3.0122 13 6 -1.4673 -4.7192 -3.0444 14 7 -1.7747 -5.7203 -2.0142 15 6 -3.1659 -6.1791 -2.1246 16 6 -3.3198 -7.5191 -1.4023 17 6 -3.0254 -7.4985 0.0756 18 1 -2.3264 -8.2058 0.4968 19 6 -3.6484 -6.5765 0.8898 20 7 -4.5814 -5.7902 0.3991 21 14 -3.1619 -6.4393 2.6881 22 1 -2.0916 -7.4240 2.9879 23 1 -2.6631 -5.0678 2.9626 24 1 -4.3439 -6.7165 3.5432 25 6 -4.4215 -8.4620 -1.8901 26 6 -2.9534 -8.7859 -2.1781 27 6 -1.4963 -5.2026 -0.6681 28 6 0.0009 -4.9046 -0.5384 29 1 -0.3633 0.0045 1.0277 30 1 -0.3634 0.8877 -0.5177 31 1 -0.3633 -0.8922 -0.5099 32 1 1.6582 2.1327 0.0008 33 1 4.1203 2.1327 -0.0095 34 1 5.3516 0.0001 -0.0111 35 1 4.1207 -2.1322 -0.0011 36 1 0.5366 -2.3945 0.6050 37 1 2.0716 -3.2814 0.4449 38 1 0.5991 -5.2838 -3.3085 39 1 0.2468 -3.5809 -3.6965 40 1 -1.7348 -5.1124 -4.0251 41 1 -2.0360 -3.8100 -2.8492 42 1 -3.4260 -6.3011 -3.1760 43 1 -3.8284 -5.4429 -1.6694 44 1 -4.9688 -5.0937 0.9520 45 1 -4.9334 -9.0675 -1.1421 46 1 -5.0364 -8.1279 -2.7258 47 1 -2.6031 -8.6647 -3.2030 48 1 -2.4990 -9.6043 -1.6195 49 1 -2.0645 -4.2866 -0.5059 50 1 -1.7849 -5.9463 0.0747 51 1 0.5655 -5.8352 -0.5966 52 1 0.1984 -4.4155 0.4155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602770366.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:56 Heat of formation + Delta-G solvation = 28.524749 kcal Electronic energy + Delta-G solvation = -30913.540848 eV Core-core repulsion = 27071.812957 eV Total energy + Delta-G solvation = -3841.727892 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.32731 -39.12619 -37.78468 -36.13534 -33.67897 -33.31827 -32.41807 -32.21863 -30.62861 -28.50715 -27.41387 -26.55312 -25.81841 -23.81537 -23.08364 -22.15578 -21.28578 -21.09072 -20.28963 -19.09277 -18.49266 -17.04724 -16.49362 -16.10836 -15.98017 -15.58464 -14.89779 -14.84938 -14.75785 -14.43710 -14.20481 -13.95676 -13.78849 -13.39812 -13.26427 -13.15535 -12.99949 -12.91680 -12.71564 -12.29147 -12.08714 -12.01169 -11.91995 -11.54342 -11.25507 -11.18752 -11.01483 -11.00588 -10.84605 -10.82317 -10.64398 -10.47529 -10.34173 -10.15999 -9.63405 -9.40382 -8.96684 -8.81797 -8.68118 -8.58418 -8.34418 -8.09294 -7.33039 -6.17531 -4.16763 1.29888 1.37006 2.81022 3.12896 3.21223 3.25322 3.27429 3.75698 4.23032 4.59584 4.64868 4.73517 4.80564 4.90445 4.95421 5.01919 5.17763 5.26035 5.33889 5.43804 5.48456 5.51282 5.56934 5.59382 5.60177 5.65505 5.71468 5.79731 5.87465 5.89976 6.01876 6.04418 6.14317 6.18692 6.26331 6.35549 6.42195 6.45214 6.56133 6.57880 6.61928 6.73962 6.76841 6.77523 6.96582 6.97760 7.12441 7.22263 7.38149 7.41811 7.64507 7.74984 8.05819 8.11381 8.37294 8.38546 8.77729 9.35190 10.85596 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014886 B = 0.003138 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.492286 B = 8921.980050 C = 9892.275993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.067 4.067 3 C -0.122 4.122 4 C -0.120 4.120 5 C -0.128 4.128 6 C -0.104 4.104 7 C -0.061 4.061 8 C -0.106 4.106 9 C 0.516 3.484 10 O -0.544 6.544 11 N -0.608 5.608 12 C 0.121 3.879 13 C 0.039 3.961 14 N -0.520 5.520 15 C 0.095 3.905 16 C 0.061 3.939 17 C -0.475 4.475 18 H 0.063 0.937 19 C 0.069 3.931 20 N -0.874 5.874 21 Si 0.873 3.127 22 H -0.268 1.268 23 H -0.279 1.279 24 H -0.282 1.282 25 C -0.194 4.194 26 C -0.198 4.198 27 C 0.023 3.977 28 C 0.105 3.895 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.026 0.974 42 H 0.034 0.966 43 H 0.072 0.928 44 H 0.261 0.739 45 H 0.076 0.924 46 H 0.061 0.939 47 H 0.066 0.934 48 H 0.072 0.928 49 H 0.021 0.979 50 H 0.149 0.851 51 H 0.076 0.924 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.566 9.202 -0.099 14.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.067 4.067 3 C -0.140 4.140 4 C -0.138 4.138 5 C -0.146 4.146 6 C -0.122 4.122 7 C -0.062 4.062 8 C -0.146 4.146 9 C 0.304 3.696 10 O -0.422 6.422 11 N -0.342 5.342 12 C -0.002 4.002 13 C -0.090 4.090 14 N -0.244 5.244 15 C -0.032 4.032 16 C 0.060 3.940 17 C -0.513 4.513 18 H 0.081 0.919 19 C -0.134 4.134 20 N -0.511 5.511 21 Si 0.700 3.300 22 H -0.192 1.192 23 H -0.205 1.205 24 H -0.208 1.208 25 C -0.232 4.232 26 C -0.235 4.235 27 C -0.104 4.104 28 C -0.018 4.018 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.044 0.956 42 H 0.052 0.948 43 H 0.090 0.910 44 H 0.071 0.929 45 H 0.095 0.905 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.091 0.909 49 H 0.039 0.961 50 H 0.165 0.835 51 H 0.094 0.906 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.853 9.295 -0.602 15.075 hybrid contribution -0.444 0.741 1.022 1.338 sum 11.410 10.037 0.420 15.202 Atomic orbital electron populations 1.20838 0.91330 1.03162 1.02130 1.19723 0.95961 0.92592 0.98392 1.20967 0.94275 0.97264 1.01477 1.21074 0.94276 0.97906 1.00569 1.21036 0.99615 0.92492 1.01414 1.20964 0.93376 0.98188 0.99679 1.19187 0.93434 0.93241 1.00300 1.20744 1.02003 0.96159 0.95671 1.20402 0.77834 0.80540 0.90858 1.90679 1.54481 1.51127 1.45952 1.48308 1.55041 1.22074 1.08754 1.21650 0.95311 1.00263 0.82938 1.22449 0.94710 0.94707 0.97165 1.61778 1.25325 1.34872 1.02413 1.21602 0.86820 0.98532 0.96260 1.18773 0.95836 0.86134 0.93246 1.20540 1.23799 1.16768 0.90207 0.91894 1.24967 0.94128 0.96459 0.97875 1.69952 1.24893 1.19570 1.36704 0.86831 0.79029 0.78368 0.85789 1.19196 1.20489 1.20780 1.22859 0.90791 1.07575 1.01992 1.22777 0.98334 1.02790 0.99644 1.23255 0.91605 1.01205 0.94382 1.22146 0.97927 0.93468 0.88227 0.91035 0.91462 0.91509 0.86249 0.86341 0.86279 0.86262 0.87855 0.88062 0.91139 0.89652 0.90640 0.95596 0.94795 0.91027 0.92899 0.90531 0.92042 0.91537 0.90949 0.96063 0.83463 0.90590 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 9.22 36.01 0.33 -1.09 16 2 C -0.07 -0.87 5.88 -104.62 -0.62 -1.48 16 3 C -0.12 -1.42 9.70 -39.58 -0.38 -1.80 16 4 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 5 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 6 C -0.10 -1.26 9.68 -39.59 -0.38 -1.65 16 7 C -0.06 -0.81 4.37 -104.63 -0.46 -1.27 16 8 C -0.11 -1.36 3.51 -29.04 -0.10 -1.46 16 9 C 0.52 8.14 6.90 -10.99 -0.08 8.06 16 10 O -0.54 -10.21 15.49 5.55 0.09 -10.12 16 11 N -0.61 -9.58 3.01 -172.48 -0.52 -10.10 16 12 C 0.12 1.90 6.59 -3.60 -0.02 1.87 16 13 C 0.04 0.66 5.59 -3.70 -0.02 0.64 16 14 N -0.52 -10.08 4.56 -234.35 -1.07 -11.15 16 15 C 0.09 2.05 4.77 -3.82 -0.02 2.03 16 16 C 0.06 1.39 1.77 -155.66 -0.28 1.11 16 17 C -0.48 -11.54 6.58 -34.44 -0.23 -11.77 16 18 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 19 C 0.07 1.66 3.68 -17.82 -0.07 1.59 16 20 N -0.87 -22.17 11.43 55.43 0.63 -21.53 16 21 Si 0.87 18.70 29.07 -169.99 -4.94 13.76 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 C -0.19 -4.25 9.94 -26.69 -0.27 -4.51 16 26 C -0.20 -4.13 9.95 -26.69 -0.27 -4.39 16 27 C 0.02 0.44 4.92 -3.73 -0.02 0.43 16 28 C 0.10 1.64 6.50 -3.62 -0.02 1.61 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 31 H 0.07 0.92 6.15 -51.93 -0.32 0.60 16 32 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 33 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 35 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 36 H 0.10 1.25 6.53 -51.92 -0.34 0.91 16 37 H 0.10 1.08 7.90 -51.92 -0.41 0.67 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.09 1.35 7.07 -51.92 -0.37 0.98 16 40 H 0.08 1.18 7.90 -51.93 -0.41 0.77 16 41 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.03 0.70 7.75 -51.93 -0.40 0.29 16 43 H 0.07 1.74 6.13 -51.93 -0.32 1.43 16 44 H 0.26 6.41 8.32 -40.82 -0.34 6.07 16 45 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 46 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 47 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 48 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 49 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.15 3.18 3.02 -51.93 -0.16 3.03 16 51 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 52 H 0.08 1.02 6.02 -51.93 -0.31 0.71 16 LS Contribution 402.74 15.07 6.07 6.07 Total: -1.00 -27.72 402.74 -11.92 -39.65 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -8.50 Total: 8.98 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -3.68 Total: -15.56 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: -0.95 Total: -42.78 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -4.94 Total: 13.76 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -27.72 -11.92 -39.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602770366.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.173 kcal (2) G-P(sol) polarization free energy of solvation -27.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds