Wall clock time and date at job start Wed Apr 1 2020 02:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 119.99809 * 2 1 4 4 C 1.38212 * 120.00281 * 180.27578 * 3 2 1 5 5 C 1.38255 * 119.99437 * 359.74592 * 4 3 2 6 6 C 1.38215 * 120.00315 * 359.97438 * 5 4 3 7 7 C 1.38214 * 120.00382 * 179.74860 * 2 1 3 8 8 C 1.50697 * 119.99637 * 359.97438 * 7 2 1 9 9 C 1.50694 * 109.47698 * 84.72768 * 8 7 2 10 10 O 1.21286 * 119.99542 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00449 * 179.97438 * 9 8 7 12 12 C 1.47083 * 120.88332 * 179.97438 * 11 9 8 13 13 C 1.53238 * 108.52248 * 231.16266 * 12 11 9 14 14 N 1.46902 * 109.33846 * 306.17192 * 13 12 11 15 15 C 1.46904 * 110.99767 * 187.25710 * 14 13 12 16 16 C 1.52997 * 109.47104 * 160.45974 * 15 14 13 17 17 C 1.50707 * 115.55057 * 61.43396 * 16 15 14 18 18 H 1.07999 * 119.99887 * 232.37857 * 17 16 15 19 19 C 1.37881 * 119.99620 * 52.37741 * 17 16 15 20 20 N 1.31508 * 120.00290 * 5.69627 * 19 17 16 21 21 Si 1.86801 * 119.99449 * 185.96815 * 19 17 16 22 22 H 1.48498 * 109.47345 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46757 * 120.00204 * 21 19 17 24 24 H 1.48500 * 109.47334 * 239.99935 * 21 19 17 25 25 C 1.52995 * 117.49713 * 207.10366 * 16 15 14 26 26 C 1.53002 * 117.49827 * 275.76515 * 16 15 14 27 27 C 1.46890 * 111.27176 * 63.10230 * 14 13 12 28 28 C 1.47080 * 120.88109 * 359.97374 * 11 9 8 29 29 H 1.09005 * 109.46937 * 270.25159 * 1 2 3 30 30 H 1.08995 * 109.47514 * 30.25159 * 1 2 3 31 31 H 1.08996 * 109.47100 * 150.25445 * 1 2 3 32 32 H 1.08007 * 120.00449 * 0.04678 * 3 2 1 33 33 H 1.07995 * 120.00373 * 179.77069 * 4 3 2 34 34 H 1.08000 * 119.99891 * 179.97438 * 5 4 3 35 35 H 1.08004 * 119.99952 * 179.97438 * 6 5 4 36 36 H 1.09009 * 109.47474 * 324.72092 * 8 7 2 37 37 H 1.09007 * 109.47138 * 204.73098 * 8 7 2 38 38 H 1.08993 * 109.63156 * 111.45097 * 12 11 9 39 39 H 1.09008 * 109.78607 * 350.96722 * 12 11 9 40 40 H 1.08995 * 109.49237 * 186.20722 * 13 12 11 41 41 H 1.09004 * 109.49425 * 66.12852 * 13 12 11 42 42 H 1.08994 * 109.47621 * 40.45539 * 15 14 13 43 43 H 1.09004 * 109.46666 * 280.45375 * 15 14 13 44 44 H 0.97005 * 119.99817 * 184.96490 * 20 19 17 45 45 H 1.09003 * 117.49778 * 215.00209 * 25 16 15 46 46 H 1.09001 * 117.50124 * 0.02562 * 25 16 15 47 47 H 1.08995 * 117.49548 * 359.97438 * 26 16 15 48 48 H 1.08999 * 117.49548 * 144.97418 * 26 16 15 49 49 H 1.09005 * 109.49402 * 56.85405 * 27 14 13 50 50 H 1.08999 * 109.49775 * 176.93421 * 27 14 13 51 51 H 1.09001 * 109.62915 * 248.54583 * 28 11 9 52 52 H 1.09002 * 109.63128 * 8.93633 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1975 -0.0058 5 6 4.2716 0.0001 -0.0062 6 6 3.5806 -1.1969 -0.0004 7 6 2.1982 -1.1969 0.0053 8 6 1.4447 -2.5020 0.0116 9 6 1.0798 -2.8784 -1.4013 10 8 1.3998 -2.1575 -2.3227 11 7 0.3981 -4.0159 -1.6410 12 6 0.0315 -4.4017 -3.0122 13 6 -1.4673 -4.7192 -3.0444 14 7 -1.7747 -5.7203 -2.0142 15 6 -3.1659 -6.1791 -2.1246 16 6 -3.3198 -7.5191 -1.4023 17 6 -3.0254 -7.4985 0.0756 18 1 -2.3264 -8.2058 0.4968 19 6 -3.6484 -6.5765 0.8898 20 7 -4.5814 -5.7902 0.3991 21 14 -3.1619 -6.4393 2.6881 22 1 -2.0916 -7.4240 2.9879 23 1 -2.6631 -5.0678 2.9626 24 1 -4.3439 -6.7165 3.5432 25 6 -4.4215 -8.4620 -1.8901 26 6 -2.9534 -8.7859 -2.1781 27 6 -1.4963 -5.2026 -0.6681 28 6 0.0009 -4.9046 -0.5384 29 1 -0.3633 0.0045 1.0277 30 1 -0.3634 0.8877 -0.5177 31 1 -0.3633 -0.8922 -0.5099 32 1 1.6582 2.1327 0.0008 33 1 4.1203 2.1327 -0.0095 34 1 5.3516 0.0001 -0.0111 35 1 4.1207 -2.1322 -0.0011 36 1 0.5366 -2.3945 0.6050 37 1 2.0716 -3.2814 0.4449 38 1 0.5991 -5.2838 -3.3085 39 1 0.2468 -3.5809 -3.6965 40 1 -1.7348 -5.1124 -4.0251 41 1 -2.0360 -3.8100 -2.8492 42 1 -3.4260 -6.3011 -3.1760 43 1 -3.8284 -5.4429 -1.6694 44 1 -4.9688 -5.0937 0.9520 45 1 -4.9334 -9.0675 -1.1421 46 1 -5.0364 -8.1279 -2.7258 47 1 -2.6031 -8.6647 -3.2030 48 1 -2.4990 -9.6043 -1.6195 49 1 -2.0645 -4.2866 -0.5059 50 1 -1.7849 -5.9463 0.0747 51 1 0.5655 -5.8352 -0.5966 52 1 0.1984 -4.4155 0.4155 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602770366.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:55 Heat of formation + Delta-G solvation = 15.599491 kcal Electronic energy + Delta-G solvation = -30914.101329 eV Core-core repulsion = 27071.812957 eV Total energy + Delta-G solvation = -3842.288373 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.48399 -40.20916 -39.25245 -37.68692 -35.07680 -34.34320 -34.17619 -33.17504 -31.97290 -29.73504 -28.60993 -27.74845 -27.42784 -25.30998 -24.43289 -23.11127 -22.83751 -22.36838 -21.44359 -20.86331 -19.76880 -18.35169 -17.87378 -17.41652 -17.01559 -16.72710 -16.61457 -15.97788 -15.94474 -15.83333 -15.77297 -15.39699 -15.00977 -14.85296 -14.49280 -14.30406 -14.19174 -14.02598 -13.88459 -13.57776 -13.31180 -13.21127 -12.96120 -12.92666 -12.87414 -12.79839 -12.48188 -12.33032 -12.17592 -12.10209 -11.99021 -11.85461 -11.81918 -11.79297 -11.16393 -10.90391 -10.74953 -10.42024 -9.90376 -9.69907 -9.67673 -9.47473 -8.94251 -8.03156 -6.06807 0.41580 0.50419 1.41564 1.49658 1.57053 1.58932 2.01374 2.44686 2.85195 3.05496 3.24854 3.61571 3.69763 3.79055 3.87269 4.02705 4.08600 4.13008 4.15254 4.25473 4.29850 4.32702 4.39538 4.47954 4.49663 4.54303 4.59537 4.67344 4.67383 4.71980 4.74785 4.80685 4.87610 4.88900 4.90922 4.97090 5.07473 5.15060 5.17670 5.25017 5.25607 5.36197 5.42273 5.57236 5.61265 5.61601 5.63949 5.66495 5.72605 5.90503 6.13751 6.33118 6.47927 6.49151 6.58939 6.90874 7.13796 7.47414 8.98735 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014886 B = 0.003138 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.492286 B = 8921.980050 C = 9892.275993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.089 4.089 3 C -0.133 4.133 4 C -0.123 4.123 5 C -0.133 4.133 6 C -0.117 4.117 7 C -0.082 4.082 8 C -0.101 4.101 9 C 0.516 3.484 10 O -0.576 6.576 11 N -0.610 5.610 12 C 0.126 3.874 13 C 0.043 3.957 14 N -0.518 5.518 15 C 0.105 3.895 16 C 0.038 3.962 17 C -0.483 4.483 18 H 0.055 0.945 19 C 0.039 3.961 20 N -0.900 5.900 21 Si 0.921 3.079 22 H -0.259 1.259 23 H -0.270 1.270 24 H -0.292 1.292 25 C -0.200 4.200 26 C -0.177 4.177 27 C 0.028 3.972 28 C 0.113 3.887 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.136 0.864 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.132 0.868 36 H 0.108 0.892 37 H 0.125 0.875 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.009 0.991 42 H 0.041 0.959 43 H 0.040 0.960 44 H 0.258 0.742 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.083 0.917 48 H 0.074 0.926 49 H -0.005 1.005 50 H 0.129 0.871 51 H 0.087 0.913 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.762 9.529 0.288 16.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.089 4.089 3 C -0.151 4.151 4 C -0.141 4.141 5 C -0.151 4.151 6 C -0.135 4.135 7 C -0.083 4.083 8 C -0.140 4.140 9 C 0.306 3.694 10 O -0.457 6.457 11 N -0.343 5.343 12 C 0.003 3.997 13 C -0.086 4.086 14 N -0.242 5.242 15 C -0.023 4.023 16 C 0.037 3.963 17 C -0.520 4.520 18 H 0.073 0.927 19 C -0.161 4.161 20 N -0.538 5.538 21 Si 0.746 3.254 22 H -0.183 1.183 23 H -0.195 1.195 24 H -0.219 1.219 25 C -0.239 4.239 26 C -0.214 4.214 27 C -0.100 4.100 28 C -0.010 4.010 29 H 0.101 0.899 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.154 0.846 33 H 0.163 0.837 34 H 0.162 0.838 35 H 0.150 0.850 36 H 0.126 0.874 37 H 0.143 0.857 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.027 0.973 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.101 0.899 48 H 0.093 0.907 49 H 0.014 0.986 50 H 0.146 0.854 51 H 0.105 0.895 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 14.062 9.607 -0.210 17.031 hybrid contribution -1.140 0.654 0.859 1.571 sum 12.922 10.261 0.649 16.513 Atomic orbital electron populations 1.20801 0.91336 1.02316 1.02638 1.19951 0.96291 0.93330 0.99296 1.21258 0.95042 0.97511 1.01265 1.21451 0.94132 0.99105 0.99409 1.21403 1.01004 0.92178 1.00487 1.21242 0.93185 0.99404 0.99682 1.19346 0.94142 0.93327 1.01472 1.20760 1.02684 0.97001 0.93605 1.20895 0.76971 0.79729 0.91795 1.90658 1.55808 1.51916 1.47282 1.48361 1.54971 1.22252 1.08729 1.21596 0.94217 1.00667 0.83217 1.22481 0.95556 0.93421 0.97127 1.61803 1.23704 1.35670 1.03060 1.21382 0.87545 0.97268 0.96062 1.18905 0.96965 0.87306 0.93140 1.20647 1.23549 1.16662 0.91184 0.92682 1.25425 0.93930 0.96076 1.00684 1.70069 1.25907 1.20074 1.37718 0.86083 0.78484 0.78883 0.81928 1.18305 1.19513 1.21854 1.22840 0.91488 1.07481 1.02043 1.22761 0.97068 1.01443 1.00154 1.23081 0.93848 0.99188 0.93853 1.22094 0.95242 0.94292 0.89337 0.89874 0.90869 0.93689 0.84648 0.83737 0.83846 0.84983 0.87383 0.85696 0.89915 0.89793 0.89087 0.97322 0.94040 0.94228 0.93273 0.91775 0.91222 0.89851 0.90729 0.98641 0.85381 0.89525 0.88107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.73 9.22 71.24 0.66 -2.08 16 2 C -0.09 -2.23 5.88 -19.87 -0.12 -2.35 16 3 C -0.13 -2.89 9.70 22.27 0.22 -2.67 16 4 C -0.12 -2.37 10.05 22.27 0.22 -2.14 16 5 C -0.13 -2.61 10.05 22.27 0.22 -2.38 16 6 C -0.12 -2.64 9.68 22.27 0.22 -2.42 16 7 C -0.08 -2.09 4.37 -19.87 -0.09 -2.18 16 8 C -0.10 -2.45 3.51 29.10 0.10 -2.34 16 9 C 0.52 15.82 6.90 87.66 0.61 16.42 16 10 O -0.58 -21.40 15.49 -3.05 -0.05 -21.45 16 11 N -0.61 -18.51 3.01 -818.00 -2.46 -20.97 16 12 C 0.13 3.80 6.59 86.35 0.57 4.37 16 13 C 0.04 1.44 5.59 86.38 0.48 1.93 16 14 N -0.52 -19.90 4.56 -895.34 -4.08 -23.98 16 15 C 0.11 4.57 4.77 86.30 0.41 4.98 16 16 C 0.04 1.71 1.77 -52.93 -0.09 1.61 16 17 C -0.48 -23.46 6.58 25.60 0.17 -23.29 16 18 H 0.06 2.71 7.82 -2.91 -0.02 2.68 16 19 C 0.04 1.92 3.68 84.66 0.31 2.23 16 20 N -0.90 -46.58 11.43 21.45 0.25 -46.33 16 21 Si 0.92 38.23 29.07 68.60 1.99 40.23 16 22 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 23 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 24 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 25 C -0.20 -8.72 9.94 30.62 0.30 -8.41 16 26 C -0.18 -7.14 9.95 30.62 0.30 -6.83 16 27 C 0.03 1.08 4.92 86.37 0.42 1.51 16 28 C 0.11 3.35 6.50 86.34 0.56 3.91 16 29 H 0.08 1.71 8.14 -2.38 -0.02 1.70 16 30 H 0.07 1.59 8.09 -2.39 -0.02 1.57 16 31 H 0.04 1.25 6.15 -2.39 -0.01 1.23 16 32 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 33 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 34 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 35 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 36 H 0.11 2.49 6.53 -2.38 -0.02 2.47 16 37 H 0.13 2.36 7.90 -2.38 -0.02 2.34 16 38 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.08 2.59 7.07 -2.38 -0.02 2.58 16 40 H 0.09 2.74 7.90 -2.39 -0.02 2.72 16 41 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 42 H 0.04 1.69 7.75 -2.39 -0.02 1.67 16 43 H 0.04 1.99 6.13 -2.38 -0.01 1.97 16 44 H 0.26 12.98 8.32 -92.70 -0.77 12.21 16 45 H 0.06 2.91 8.14 -2.39 -0.02 2.89 16 46 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 47 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 48 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 49 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 50 H 0.13 5.52 3.02 -2.39 -0.01 5.51 16 51 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 52 H 0.10 2.49 6.02 -2.39 -0.01 2.47 16 Total: -1.00 -59.84 402.74 2.03 -57.81 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: 0.90 Total: 34.85 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: 5.48 Total: -20.15 kcal Atomic # 7 Polarization: -84.99 SS G_CDS: -6.30 Total: -91.29 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.05 Total: -21.45 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 1.99 Total: 40.23 kcal Total: -59.84 2.03 -57.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602770366.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.405 kcal (2) G-P(sol) polarization free energy of solvation -59.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds