Wall clock time and date at job start Wed Apr 1 2020 03:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47117 * 2 1 4 4 C 1.38250 * 120.00285 * 265.18677 * 3 2 1 5 5 C 1.38210 * 120.00204 * 180.23205 * 4 3 2 6 6 C 1.38255 * 120.00238 * 359.81396 * 5 4 3 7 7 C 1.38209 * 119.99800 * 359.97438 * 6 5 4 8 8 C 1.38217 * 120.00082 * 84.99609 * 3 2 1 9 9 C 1.50702 * 119.99952 * 0.02562 * 8 3 2 10 10 H 1.09004 * 115.55965 * 334.02798 * 9 8 3 11 11 C 1.53072 * 117.49477 * 188.32587 * 9 8 3 12 12 C 1.52999 * 117.49978 * 119.72280 * 9 8 3 13 13 H 1.08999 * 117.50053 * 359.97438 * 12 9 8 14 14 C 1.50698 * 117.49671 * 214.97872 * 12 9 8 15 15 O 1.21278 * 120.00410 * 0.08282 * 14 12 9 16 16 N 1.34775 * 120.00132 * 180.09091 * 14 12 9 17 17 C 1.46500 * 120.00514 * 180.27535 * 16 14 12 18 18 C 1.53041 * 109.46075 * 274.75051 * 17 16 14 19 19 C 1.53192 * 109.31539 * 178.59619 * 18 17 16 20 20 N 1.46926 * 108.76081 * 54.65394 * 19 18 17 21 21 C 1.36942 * 120.62752 * 126.36204 * 20 19 18 22 22 H 1.07995 * 120.00220 * 331.84792 * 21 20 19 23 23 C 1.38818 * 119.99825 * 151.83846 * 21 20 19 24 24 N 1.31615 * 119.99772 * 343.08374 * 23 21 20 25 25 Si 1.86797 * 119.99659 * 163.07779 * 23 21 20 26 26 H 1.48499 * 109.47065 * 60.00737 * 25 23 21 27 27 H 1.48507 * 109.46889 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47415 * 300.00398 * 25 23 21 29 29 C 1.46926 * 118.74056 * 306.38080 * 20 19 18 30 30 C 1.53035 * 109.46503 * 154.69213 * 17 16 14 31 31 H 1.09003 * 109.47204 * 60.00220 * 1 2 3 32 32 H 1.08998 * 109.47599 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47486 * 300.00446 * 1 2 3 34 34 H 1.08998 * 109.47063 * 240.00046 * 2 1 3 35 35 H 1.09006 * 109.46772 * 120.00063 * 2 1 3 36 36 H 1.08005 * 120.00083 * 0.02562 * 4 3 2 37 37 H 1.08003 * 120.00094 * 179.79041 * 5 4 3 38 38 H 1.07997 * 120.00343 * 179.97438 * 6 5 4 39 39 H 1.07995 * 120.00234 * 179.97438 * 7 6 5 40 40 H 1.08994 * 117.51514 * 145.03061 * 11 9 8 41 41 H 1.09001 * 117.49285 * 359.97438 * 11 9 8 42 42 H 0.97001 * 119.99665 * 359.97438 * 16 14 12 43 43 H 1.09005 * 109.45714 * 34.72065 * 17 16 14 44 44 H 1.09002 * 109.49542 * 298.56482 * 18 17 16 45 45 H 1.09001 * 109.49859 * 58.65722 * 18 17 16 46 46 H 1.09001 * 109.59888 * 294.86833 * 19 18 17 47 47 H 1.08999 * 109.70317 * 174.50133 * 19 18 17 48 48 H 0.97005 * 119.99247 * 179.97438 * 24 23 21 49 49 H 1.08993 * 109.58951 * 293.82159 * 29 20 19 50 50 H 1.08999 * 109.58221 * 173.39444 * 29 20 19 51 51 H 1.09003 * 109.49717 * 301.34154 * 30 17 16 52 52 H 1.09002 * 109.49562 * 61.43605 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3574 2.0391 -1.1930 5 6 2.8227 3.3405 -1.1926 6 6 2.9593 4.0255 0.0006 7 6 2.6301 3.4089 1.1929 8 6 2.1642 2.1072 1.1924 9 6 1.8063 1.4345 2.4926 10 1 1.0714 0.6327 2.4206 11 6 1.7860 2.3009 3.7544 12 6 2.9120 1.2875 3.5398 13 1 3.8985 1.6769 3.2882 14 6 2.9018 0.0451 4.3927 15 8 2.0392 -0.7924 4.2339 16 7 3.8512 -0.1352 5.3321 17 6 3.8449 -1.3458 6.1572 18 6 2.9139 -1.1418 7.3546 19 6 2.8826 -2.4217 8.1959 20 7 4.2600 -2.7833 8.5575 21 6 4.6059 -2.9921 9.8659 22 1 4.0686 -2.4855 10.6539 23 6 5.6471 -3.8551 10.1794 24 7 6.0804 -4.7162 9.2833 25 14 6.4330 -3.7939 11.8728 26 1 5.4057 -4.0812 12.9060 27 1 7.5142 -4.8088 11.9536 28 1 7.0044 -2.4431 12.1050 29 6 5.2592 -2.9163 7.4886 30 6 5.2636 -1.6310 6.6551 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.2511 1.5040 -2.1251 37 1 3.0799 3.8224 -2.1243 38 1 3.3232 5.0423 0.0009 39 1 2.7372 3.9437 2.1250 40 1 1.0379 2.0691 4.5124 41 1 2.0321 3.3570 3.6436 42 1 4.5413 0.5345 5.4590 43 1 3.4924 -2.1886 5.5626 44 1 3.2799 -0.3149 7.9633 45 1 1.9086 -0.9155 6.9994 46 1 2.4328 -3.2286 7.6174 47 1 2.2997 -2.2522 9.1012 48 1 6.8083 -5.3189 9.5023 49 1 5.0033 -3.7635 6.8524 50 1 6.2451 -3.0707 7.9272 51 1 5.9310 -1.7529 5.8019 52 1 5.6073 -0.7995 7.2704 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619792866.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:03 Heat of formation + Delta-G solvation = 18.031705 kcal Electronic energy + Delta-G solvation = -29448.949244 eV Core-core repulsion = 25606.766340 eV Total energy + Delta-G solvation = -3842.182904 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 3.15 seconds Orbital eigenvalues (eV) -40.57006 -39.49594 -37.61942 -36.28350 -34.43714 -34.37543 -32.13603 -30.87262 -30.13105 -29.59991 -29.38341 -25.63470 -24.44787 -24.06597 -23.76229 -22.26030 -21.67482 -21.29579 -20.40349 -19.96512 -19.18481 -17.59447 -16.96453 -16.49576 -15.99956 -15.62339 -15.25978 -14.91378 -14.78950 -14.28970 -14.15420 -14.04246 -13.74084 -13.71050 -13.54229 -13.43459 -13.02424 -12.72837 -12.60707 -12.45022 -12.37665 -12.07232 -11.98636 -11.64160 -11.46927 -11.15559 -11.12143 -11.04925 -10.87696 -10.75514 -10.71858 -10.61693 -10.48411 -10.28996 -10.04482 -9.88381 -9.69936 -9.48219 -9.03954 -8.73604 -8.69102 -8.45689 -6.68892 -5.79984 -3.22299 1.02665 1.12283 2.58996 3.22110 3.37936 3.43628 3.44684 3.45305 3.85426 4.32576 4.48740 4.49110 4.54907 4.61678 4.69176 4.74371 4.91737 4.94517 5.02552 5.17513 5.25254 5.27015 5.33195 5.35434 5.39719 5.46528 5.51092 5.58934 5.64490 5.71025 5.75791 5.78098 5.83705 5.87683 5.93322 6.06697 6.07450 6.24472 6.26765 6.27799 6.34261 6.45072 6.52927 6.55367 6.59363 6.73953 6.79329 6.92050 6.99007 7.31226 7.59072 7.73656 7.79496 8.40640 8.44325 9.20243 9.83435 10.40636 11.28942 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.024392 B = 0.001959 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.634307 B =14286.978929 C =14535.172113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.068 4.068 4 C -0.117 4.117 5 C -0.122 4.122 6 C -0.124 4.124 7 C -0.118 4.118 8 C -0.050 4.050 9 C -0.087 4.087 10 H 0.130 0.870 11 C -0.146 4.146 12 C -0.176 4.176 13 H 0.122 0.878 14 C 0.539 3.461 15 O -0.542 6.542 16 N -0.719 5.719 17 C 0.151 3.849 18 C -0.138 4.138 19 C 0.147 3.853 20 N -0.593 5.593 21 C -0.253 4.253 22 H 0.065 0.935 23 C 0.002 3.998 24 N -0.903 5.903 25 Si 0.903 3.097 26 H -0.282 1.282 27 H -0.291 1.291 28 H -0.284 1.284 29 C 0.174 3.826 30 C -0.147 4.147 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.396 0.604 43 H 0.081 0.919 44 H 0.058 0.942 45 H 0.053 0.947 46 H 0.020 0.980 47 H 0.056 0.944 48 H 0.255 0.745 49 H 0.021 0.979 50 H 0.092 0.908 51 H 0.054 0.946 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.518 17.615 -20.212 27.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.068 4.068 4 C -0.135 4.135 5 C -0.140 4.140 6 C -0.142 4.142 7 C -0.135 4.135 8 C -0.050 4.050 9 C -0.105 4.105 10 H 0.148 0.852 11 C -0.183 4.183 12 C -0.197 4.197 13 H 0.140 0.860 14 C 0.325 3.675 15 O -0.419 6.419 16 N -0.368 5.368 17 C 0.048 3.952 18 C -0.178 4.178 19 C 0.020 3.980 20 N -0.315 5.315 21 C -0.382 4.382 22 H 0.083 0.917 23 C -0.197 4.197 24 N -0.548 5.548 25 Si 0.733 3.267 26 H -0.209 1.209 27 H -0.216 1.216 28 H -0.211 1.211 29 C 0.048 3.952 30 C -0.187 4.187 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.230 0.770 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.038 0.962 47 H 0.074 0.926 48 H 0.065 0.935 49 H 0.039 0.961 50 H 0.110 0.890 51 H 0.072 0.928 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.003 16.837 -20.271 27.266 hybrid contribution 0.972 0.428 0.864 1.369 sum -6.031 17.265 -19.406 26.666 Atomic orbital electron populations 1.21738 0.94555 1.01993 1.02013 1.20612 0.96404 0.92479 1.03388 1.19751 0.98436 0.96252 0.92353 1.21032 0.99922 0.95182 0.97407 1.21125 0.99957 0.94853 0.98063 1.21085 1.00690 0.99908 0.92510 1.21055 0.99570 0.94550 0.98359 1.18994 0.99406 0.93723 0.92831 1.21135 1.00520 1.01781 0.87059 0.85220 1.23132 0.99389 0.96268 0.99497 1.22387 0.96796 0.98108 1.02416 0.85982 1.19547 0.81561 0.86482 0.79938 1.90692 1.37098 1.44704 1.69427 1.46270 1.30097 1.23843 1.36590 1.21054 0.97282 0.86019 0.90883 1.22365 0.98198 1.00652 0.96606 1.20874 0.88008 0.92706 0.96368 1.44085 1.03006 1.80902 1.03545 1.19146 1.15856 1.20019 0.83211 0.91699 1.25062 1.01445 0.95602 0.97585 1.70019 1.29306 1.20964 1.34474 0.86357 0.79014 0.77213 0.84107 1.20866 1.21639 1.21058 1.20743 0.95976 0.90182 0.88319 1.22538 0.93760 1.02679 0.99674 0.92813 0.92172 0.92329 0.91142 0.90103 0.86100 0.86218 0.86156 0.85872 0.87680 0.87557 0.77035 0.90067 0.92346 0.92817 0.96213 0.92564 0.93540 0.96108 0.89028 0.92770 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.74 37.16 0.36 -0.87 16 2 C -0.09 -0.84 5.38 -27.89 -0.15 -0.99 16 3 C -0.07 -0.65 5.13 -104.63 -0.54 -1.19 16 4 C -0.12 -1.00 9.68 -39.59 -0.38 -1.38 16 5 C -0.12 -0.95 10.05 -39.59 -0.40 -1.35 16 6 C -0.12 -0.97 10.05 -39.59 -0.40 -1.36 16 7 C -0.12 -1.00 9.30 -39.58 -0.37 -1.37 16 8 C -0.05 -0.48 5.61 -104.62 -0.59 -1.07 16 9 C -0.09 -0.90 4.66 -91.73 -0.43 -1.32 16 10 H 0.13 1.54 5.48 -51.93 -0.28 1.26 16 11 C -0.15 -1.31 9.57 -26.69 -0.26 -1.57 16 12 C -0.18 -1.86 5.82 -91.77 -0.53 -2.40 16 13 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 14 C 0.54 7.75 7.58 -10.99 -0.08 7.67 16 15 O -0.54 -9.82 15.92 5.56 0.09 -9.73 16 16 N -0.72 -10.07 5.08 -53.77 -0.27 -10.34 16 17 C 0.15 2.63 2.42 -67.89 -0.16 2.47 16 18 C -0.14 -2.53 5.65 -26.61 -0.15 -2.68 16 19 C 0.15 3.19 6.52 -3.71 -0.02 3.16 16 20 N -0.59 -14.84 2.99 -172.32 -0.52 -15.35 16 21 C -0.25 -6.90 9.58 -15.05 -0.14 -7.05 16 22 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 23 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 24 N -0.90 -26.07 11.20 55.49 0.62 -25.45 16 25 Si 0.90 21.54 29.59 -169.99 -5.03 16.51 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 28 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 29 C 0.17 4.10 5.30 -3.71 -0.02 4.08 16 30 C -0.15 -2.69 5.55 -26.61 -0.15 -2.83 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.53 7.17 -51.93 -0.37 0.16 16 34 H 0.07 0.57 8.05 -51.93 -0.42 0.15 16 35 H 0.08 0.88 6.95 -51.93 -0.36 0.52 16 36 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 37 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 38 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.12 0.85 6.02 -52.49 -0.32 0.53 16 40 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.11 0.73 6.18 -51.93 -0.32 0.41 16 42 H 0.40 4.48 8.60 -40.82 -0.35 4.13 16 43 H 0.08 1.60 7.57 -51.93 -0.39 1.21 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 1.19 7.93 -51.93 -0.41 0.77 16 48 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 49 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.09 2.39 6.06 -51.93 -0.31 2.07 16 51 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 52 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 410.38 15.07 6.18 6.18 Total: -1.00 -31.42 410.38 -12.01 -43.42 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -8.59 Total: 4.85 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -4.49 Total: -10.10 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.17 Total: -51.14 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.42 -12.01 -43.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619792866.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.454 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.15 seconds