Wall clock time and date at job start Wed Apr 1 2020 02:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50697 * 115.55327 * 2 1 4 4 C 1.38236 * 119.99948 * 87.74582 * 3 2 1 5 5 C 1.38236 * 119.99823 * 179.78547 * 4 3 2 6 6 C 1.38234 * 119.99972 * 0.44645 * 5 4 3 7 7 C 1.38229 * 119.99943 * 359.80632 * 6 5 4 8 8 C 1.38232 * 120.00195 * 359.97438 * 7 6 5 9 9 C 1.53083 * 117.50912 * 214.27805 * 2 1 3 10 10 C 1.53000 * 59.98470 * 252.52241 * 9 2 1 11 11 H 1.09006 * 117.49647 * 107.49736 * 10 9 2 12 12 C 1.50696 * 117.50256 * 252.49824 * 10 9 2 13 13 O 1.21287 * 119.99816 * 28.01873 * 12 10 9 14 14 N 1.34773 * 120.00310 * 208.01813 * 12 10 9 15 15 C 1.46495 * 120.00202 * 180.02562 * 14 12 10 16 16 C 1.53002 * 109.47299 * 180.02562 * 15 14 12 17 17 H 1.08998 * 109.52591 * 54.91590 * 16 15 14 18 18 C 1.53034 * 109.49928 * 175.00269 * 16 15 14 19 19 C 1.53043 * 109.53969 * 181.31490 * 18 16 15 20 20 C 1.53186 * 109.30884 * 298.63143 * 19 18 16 21 21 N 1.46929 * 108.77721 * 54.63607 * 20 19 18 22 22 C 1.36940 * 120.62755 * 126.36866 * 21 20 19 23 23 H 1.07999 * 120.00392 * 331.77738 * 22 21 20 24 24 C 1.38811 * 119.99516 * 151.78395 * 22 21 20 25 25 N 1.31617 * 120.00211 * 334.64068 * 24 22 21 26 26 Si 1.86803 * 120.00024 * 154.63929 * 24 22 21 27 27 H 1.48507 * 109.46676 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47293 * 119.99565 * 26 24 22 29 29 H 1.48500 * 109.46987 * 240.00082 * 26 24 22 30 30 C 1.46924 * 118.73743 * 306.63947 * 21 20 19 31 31 H 1.09001 * 109.47145 * 274.33207 * 1 2 3 32 32 H 1.09003 * 109.46769 * 34.32292 * 1 2 3 33 33 H 1.09001 * 109.47567 * 154.32694 * 1 2 3 34 34 H 1.08000 * 119.99978 * 0.02562 * 4 3 2 35 35 H 1.07999 * 119.99812 * 180.27371 * 5 4 3 36 36 H 1.08003 * 119.99426 * 179.83459 * 6 5 4 37 37 H 1.08002 * 119.99429 * 180.02562 * 7 6 5 38 38 H 1.07999 * 119.99816 * 179.97438 * 8 7 6 39 39 H 1.08998 * 117.50961 * 145.04932 * 9 2 1 40 40 H 1.08995 * 117.49159 * 0.02562 * 9 2 1 41 41 H 0.97001 * 120.00054 * 0.02562 * 14 12 10 42 42 H 1.09003 * 109.47417 * 60.00075 * 15 14 12 43 43 H 1.09008 * 109.47237 * 300.00049 * 15 14 12 44 44 H 1.08998 * 109.46441 * 61.29149 * 18 16 15 45 45 H 1.09002 * 109.46050 * 301.33301 * 18 16 15 46 46 H 1.09000 * 109.49929 * 178.68117 * 19 18 16 47 47 H 1.09001 * 109.49481 * 58.58308 * 19 18 16 48 48 H 1.09000 * 109.58809 * 294.84295 * 20 19 18 49 49 H 1.09006 * 109.58579 * 174.42524 * 20 19 18 50 50 H 0.97004 * 120.00028 * 354.68289 * 25 24 22 51 51 H 1.08997 * 109.58692 * 173.14739 * 30 21 20 52 52 H 1.09003 * 109.58772 * 293.57484 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 6 2.4356 2.0034 1.1962 5 6 3.0360 3.2486 1.1964 6 6 3.3722 3.8540 0.0000 7 6 3.1118 3.2124 -1.1964 8 6 2.5156 1.9652 -1.1964 9 6 2.2370 -1.1219 -0.7647 10 6 2.2364 -1.1209 0.7653 11 1 1.6111 -1.8582 1.2688 12 6 3.5289 -0.7807 1.4615 13 8 4.3382 -0.0584 0.9188 14 7 3.7857 -1.2791 2.6870 15 6 5.0420 -0.9480 3.3640 16 6 5.0828 -1.6375 4.7293 17 1 4.9265 -2.7086 4.6013 18 6 6.4446 -1.3946 5.3838 19 6 6.4983 -2.1111 6.7350 20 6 5.4121 -1.5424 7.6534 21 7 4.1154 -1.6404 6.9695 22 6 3.0530 -2.2581 7.5736 23 1 3.2237 -3.0437 8.2948 24 6 1.7566 -1.8747 7.2588 25 7 1.5204 -0.6607 6.8084 26 14 0.3472 -3.0815 7.4743 27 1 0.8739 -4.3704 7.9908 28 1 -0.6368 -2.5265 8.4382 29 1 -0.3158 -3.3074 6.1648 30 6 3.9821 -1.0684 5.6228 31 1 -0.3633 0.0776 1.0247 32 1 -0.3633 0.8488 -0.5795 33 1 -0.3634 -0.9262 -0.4452 34 1 2.1699 1.5319 2.1308 35 1 3.2397 3.7497 2.1311 36 1 3.8388 4.8280 0.0001 37 1 3.3749 3.6852 -2.1311 38 1 2.3118 1.4642 -2.1312 39 1 3.1724 -0.8766 -1.2677 40 1 1.6119 -1.8595 -1.2679 41 1 3.1387 -1.8571 3.1209 42 1 5.1081 0.1315 3.4997 43 1 5.8818 -1.2903 2.7593 44 1 6.5896 -0.3248 5.5341 45 1 7.2324 -1.7802 4.7367 46 1 7.4767 -1.9571 7.1899 47 1 6.3287 -3.1778 6.5880 48 1 5.6307 -0.4977 7.8745 49 1 5.3806 -2.1152 8.5803 50 1 2.2384 -0.0097 6.7691 51 1 3.0073 -1.3284 5.2102 52 1 4.0817 0.0159 5.6748 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878949091.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:06 Heat of formation + Delta-G solvation = 19.099103 kcal Electronic energy + Delta-G solvation = -30772.267205 eV Core-core repulsion = 26930.130587 eV Total energy + Delta-G solvation = -3842.136618 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.48508 -38.83895 -37.96423 -36.70305 -34.63974 -33.27841 -31.09804 -30.73871 -30.52901 -29.71822 -28.68278 -26.10641 -25.13530 -23.55490 -23.06814 -22.24560 -22.00918 -20.94212 -20.17186 -19.45796 -18.95432 -17.54350 -17.21230 -16.39181 -15.69095 -15.24712 -14.88239 -14.75997 -14.48988 -14.34508 -14.13189 -13.94725 -13.80061 -13.53863 -13.27316 -13.14805 -13.05443 -12.87573 -12.61595 -12.49721 -12.23029 -12.17118 -12.07779 -11.87785 -11.54602 -11.04074 -10.97224 -10.90146 -10.72342 -10.45071 -10.38058 -10.26582 -10.13916 -10.02344 -9.98537 -9.90176 -9.47511 -9.31788 -8.80326 -8.70210 -8.47849 -8.40791 -6.91479 -6.11688 -3.27711 1.50334 1.58506 2.63780 3.40208 3.45922 3.47762 3.62243 3.80046 3.93697 4.51994 4.53781 4.66292 4.75050 4.94860 5.02191 5.07651 5.12768 5.19147 5.24870 5.26205 5.40174 5.43409 5.52812 5.53445 5.58183 5.61631 5.64477 5.68829 5.79325 5.79963 5.87694 5.96235 5.98613 6.06792 6.15866 6.17203 6.18053 6.18464 6.27331 6.37279 6.47038 6.59875 6.65804 6.66929 6.70531 6.74230 6.75594 6.84827 6.98857 7.13497 7.15474 7.81557 7.98253 8.51830 8.53343 9.07621 9.80325 10.26026 11.16298 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010868 B = 0.003447 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.726457 B = 8121.837293 C = 9184.087075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.058 4.058 3 C -0.032 4.032 4 C -0.091 4.091 5 C -0.115 4.115 6 C -0.124 4.124 7 C -0.124 4.124 8 C -0.108 4.108 9 C -0.134 4.134 10 C -0.181 4.181 11 H 0.122 0.878 12 C 0.539 3.461 13 O -0.536 6.536 14 N -0.720 5.720 15 C 0.133 3.867 16 C -0.121 4.121 17 H 0.072 0.928 18 C -0.100 4.100 19 C -0.133 4.133 20 C 0.145 3.855 21 N -0.599 5.599 22 C -0.350 4.350 23 H 0.055 0.945 24 C -0.023 4.023 25 N -0.914 5.914 26 Si 1.066 2.934 27 H -0.292 1.292 28 H -0.294 1.294 29 H -0.290 1.290 30 C 0.161 3.839 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.404 0.596 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.052 0.948 47 H 0.058 0.942 48 H 0.015 0.985 49 H 0.054 0.946 50 H 0.269 0.731 51 H 0.077 0.923 52 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.109 1.964 -15.103 15.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.059 4.059 3 C -0.032 4.032 4 C -0.109 4.109 5 C -0.133 4.133 6 C -0.142 4.142 7 C -0.142 4.142 8 C -0.126 4.126 9 C -0.172 4.172 10 C -0.202 4.202 11 H 0.140 0.860 12 C 0.325 3.675 13 O -0.413 6.413 14 N -0.371 5.371 15 C 0.009 3.991 16 C -0.142 4.142 17 H 0.090 0.910 18 C -0.138 4.138 19 C -0.172 4.172 20 C 0.019 3.981 21 N -0.323 5.323 22 C -0.479 4.479 23 H 0.073 0.927 24 C -0.225 4.225 25 N -0.554 5.554 26 Si 0.896 3.104 27 H -0.218 1.218 28 H -0.221 1.221 29 H -0.217 1.217 30 C 0.035 3.965 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.239 0.761 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.033 0.967 49 H 0.072 0.928 50 H 0.080 0.920 51 H 0.096 0.904 52 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 1.052 2.248 -15.656 15.852 hybrid contribution 1.497 -0.176 0.740 1.679 sum 2.549 2.073 -14.916 15.273 Atomic orbital electron populations 1.21381 0.90447 1.02304 1.02900 1.20172 0.94508 0.88013 1.03206 1.18766 0.97925 0.93173 0.93361 1.20918 0.97694 0.94821 0.97445 1.21064 0.98768 0.95509 0.97978 1.21056 1.00617 0.99840 0.92714 1.20995 0.99999 0.95482 0.97769 1.20804 0.99282 0.95341 0.97149 1.23197 1.02862 0.99804 0.91295 1.22463 0.98137 1.03808 0.95817 0.85953 1.19470 0.86921 0.79840 0.81251 1.90700 1.48231 1.36711 1.65698 1.45976 1.21748 1.51598 1.17757 1.21345 0.85277 0.99975 0.92547 1.21940 0.98150 1.00647 0.93464 0.90968 1.21332 0.95695 1.00278 0.96526 1.21983 0.98770 1.00199 0.96254 1.20926 0.86062 0.96953 0.94163 1.44103 1.07847 1.68076 1.12241 1.20018 0.86517 1.15040 1.26309 0.92696 1.25808 0.98127 0.98772 0.99833 1.70727 1.35351 1.02145 1.47163 0.83525 0.75575 0.74854 0.76483 1.21841 1.22083 1.21664 1.20847 0.96503 0.94396 0.84755 0.91348 0.91581 0.91799 0.86611 0.86372 0.86599 0.86546 0.86548 0.87667 0.87728 0.76073 0.91929 0.92320 0.92514 0.93158 0.92939 0.92332 0.96687 0.92762 0.92007 0.90422 0.96665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.84 37.16 0.37 -0.78 16 2 C -0.06 -0.71 2.17 -155.62 -0.34 -1.05 16 3 C -0.03 -0.45 3.61 -104.63 -0.38 -0.83 16 4 C -0.09 -1.39 7.75 -39.58 -0.31 -1.70 16 5 C -0.12 -1.64 10.05 -39.58 -0.40 -2.04 16 6 C -0.12 -1.58 10.05 -39.59 -0.40 -1.98 16 7 C -0.12 -1.51 10.05 -39.59 -0.40 -1.91 16 8 C -0.11 -1.37 9.53 -39.59 -0.38 -1.75 16 9 C -0.13 -1.48 9.22 -26.69 -0.25 -1.73 16 10 C -0.18 -2.34 5.89 -91.77 -0.54 -2.88 16 11 H 0.12 1.41 8.14 -51.93 -0.42 0.98 16 12 C 0.54 8.56 6.31 -10.99 -0.07 8.49 16 13 O -0.54 -9.90 14.25 5.55 0.08 -9.82 16 14 N -0.72 -11.40 5.33 -60.29 -0.32 -11.72 16 15 C 0.13 2.17 5.07 -4.04 -0.02 2.15 16 16 C -0.12 -2.14 2.36 -90.72 -0.21 -2.35 16 17 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 18 C -0.10 -1.62 5.17 -26.69 -0.14 -1.76 16 19 C -0.13 -2.26 6.08 -26.61 -0.16 -2.42 16 20 C 0.15 3.01 6.52 -3.71 -0.02 2.99 16 21 N -0.60 -14.51 2.85 -172.58 -0.49 -15.00 16 22 C -0.35 -9.46 9.48 -15.06 -0.14 -9.60 16 23 H 0.06 1.51 7.95 -52.49 -0.42 1.10 16 24 C -0.02 -0.63 4.67 -17.43 -0.08 -0.71 16 25 N -0.91 -26.27 12.46 55.49 0.69 -25.58 16 26 Si 1.07 24.38 29.99 -169.99 -5.10 19.28 16 27 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 30 C 0.16 3.54 3.77 -3.93 -0.01 3.52 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 33 H 0.06 0.53 7.90 -51.93 -0.41 0.12 16 34 H 0.12 1.90 7.84 -52.49 -0.41 1.49 16 35 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 37 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.10 1.29 7.94 -51.93 -0.41 0.88 16 40 H 0.10 0.88 8.05 -51.93 -0.42 0.47 16 41 H 0.40 6.27 7.69 -40.82 -0.31 5.95 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 49 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 50 H 0.27 7.90 6.76 -40.82 -0.28 7.62 16 51 H 0.08 1.86 5.56 -51.93 -0.29 1.57 16 52 H 0.02 0.36 7.87 -51.93 -0.41 -0.05 16 LS Contribution 410.99 15.07 6.19 6.19 Total: -1.00 -31.18 410.99 -11.73 -42.91 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -8.90 Total: 10.07 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -3.88 Total: -16.33 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.12 Total: -52.30 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.08 Total: -9.82 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -5.10 Total: 19.28 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.18 -11.73 -42.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878949091.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.005 kcal (2) G-P(sol) polarization free energy of solvation -31.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds