Wall clock time and date at job start Wed Apr 1 2020 02:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50702 * 115.55018 * 2 1 4 4 C 1.38233 * 119.99666 * 41.76559 * 3 2 1 5 5 C 1.38238 * 119.99680 * 179.72387 * 4 3 2 6 6 C 1.38239 * 120.00080 * 0.27994 * 5 4 3 7 7 C 1.38236 * 119.99787 * 359.95195 * 6 5 4 8 8 C 1.38231 * 120.00110 * 221.95602 * 3 2 1 9 9 C 1.53000 * 117.49908 * 214.32926 * 2 1 3 10 10 C 1.52996 * 117.51423 * 145.70032 * 2 1 3 11 11 H 1.08998 * 117.50475 * 359.97438 * 10 2 1 12 12 C 1.50701 * 117.49919 * 214.97039 * 10 2 1 13 13 O 1.21288 * 119.99783 * 8.95209 * 12 10 2 14 14 N 1.34773 * 120.00361 * 188.95307 * 12 10 2 15 15 C 1.46497 * 120.00236 * 179.97438 * 14 12 10 16 16 C 1.52994 * 109.47317 * 180.02562 * 15 14 12 17 17 H 1.09006 * 109.50025 * 304.99857 * 16 15 14 18 18 C 1.53047 * 109.49953 * 184.93674 * 16 15 14 19 19 C 1.53035 * 109.53876 * 178.68372 * 18 16 15 20 20 C 1.53191 * 109.31518 * 61.36442 * 19 18 16 21 21 N 1.46932 * 108.77528 * 305.36548 * 20 19 18 22 22 C 1.36935 * 120.63020 * 233.61200 * 21 20 19 23 23 H 1.08000 * 120.00279 * 146.10411 * 22 21 20 24 24 C 1.38813 * 119.99776 * 326.09800 * 22 21 20 25 25 N 1.31618 * 120.00172 * 347.62189 * 24 22 21 26 26 Si 1.86806 * 119.99668 * 167.61432 * 24 22 21 27 27 H 1.48506 * 109.46743 * 90.00694 * 26 24 22 28 28 H 1.48497 * 109.46985 * 209.99956 * 26 24 22 29 29 H 1.48495 * 109.47374 * 330.00074 * 26 24 22 30 30 C 1.46931 * 118.76456 * 53.58440 * 21 20 19 31 31 H 1.09006 * 109.46696 * 34.41756 * 1 2 3 32 32 H 1.09001 * 109.46778 * 154.41348 * 1 2 3 33 33 H 1.08993 * 109.46898 * 274.41675 * 1 2 3 34 34 H 1.07999 * 120.00818 * 0.02562 * 4 3 2 35 35 H 1.07997 * 120.00141 * 180.25518 * 5 4 3 36 36 H 1.07992 * 120.00007 * 179.97438 * 6 5 4 37 37 H 1.07998 * 119.99733 * 180.02562 * 7 6 5 38 38 H 1.08003 * 119.99963 * 0.02562 * 8 3 2 39 39 H 1.09006 * 117.49895 * 359.97438 * 9 2 1 40 40 H 1.08991 * 117.49828 * 144.99805 * 9 2 1 41 41 H 0.97004 * 119.99879 * 0.02562 * 14 12 10 42 42 H 1.09003 * 109.47383 * 300.00296 * 15 14 12 43 43 H 1.09007 * 109.47106 * 59.99892 * 15 14 12 44 44 H 1.09006 * 109.45826 * 298.70264 * 18 16 15 45 45 H 1.08996 * 109.45744 * 58.65913 * 18 16 15 46 46 H 1.09000 * 109.49871 * 181.31938 * 19 18 16 47 47 H 1.09006 * 109.50042 * 301.40881 * 19 18 16 48 48 H 1.08994 * 109.58823 * 65.15298 * 20 19 18 49 49 H 1.08999 * 109.58818 * 185.57596 * 20 19 18 50 50 H 0.97001 * 120.00121 * 179.97438 * 25 24 22 51 51 H 1.08999 * 109.61453 * 186.64629 * 30 21 20 52 52 H 1.09005 * 109.56064 * 66.21394 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1801 1.3596 0.0000 4 6 1.6725 2.3683 0.7974 5 6 2.2722 3.6138 0.8017 6 6 3.3759 3.8523 0.0043 7 6 3.8805 2.8450 -0.7968 8 6 3.2813 1.5993 -0.8003 9 6 2.2365 -1.1207 -0.7654 10 6 2.2369 -1.1209 0.7647 11 1 1.6120 -1.8585 1.2683 12 6 3.5298 -0.7810 1.4602 13 8 3.8900 0.3744 1.5397 14 7 4.2859 -1.7608 1.9938 15 6 5.5431 -1.4303 2.6694 16 6 6.2008 -2.7141 3.1794 17 1 5.4977 -3.2569 3.8113 18 6 7.4493 -2.3608 3.9910 19 6 8.0896 -3.6424 4.5291 20 6 8.5118 -4.5299 3.3540 21 7 7.3460 -4.7551 2.4886 22 6 6.9604 -6.0258 2.1541 23 1 5.9133 -6.2556 2.0233 24 6 7.9155 -7.0185 1.9832 25 7 9.1895 -6.6987 1.9000 26 14 7.3924 -8.8083 1.8714 27 1 7.1324 -9.1603 0.4522 28 1 8.4739 -9.6743 2.4059 29 1 6.1554 -9.0132 2.6669 30 6 6.6009 -3.5914 1.9891 31 1 -0.3633 0.8478 -0.5809 32 1 -0.3633 -0.9269 -0.4438 33 1 -0.3633 0.0791 1.0246 34 1 0.8105 2.1819 1.4208 35 1 1.8782 4.4007 1.4278 36 1 3.8441 4.8255 0.0073 37 1 4.7430 3.0313 -1.4195 38 1 3.6757 0.8122 -1.4260 39 1 1.6113 -1.8584 -1.2686 40 1 3.1713 -0.8747 -1.2688 41 1 3.9980 -2.6849 1.9298 42 1 6.2130 -0.9333 1.9677 43 1 5.3402 -0.7667 3.5101 44 1 8.1622 -1.8393 3.3521 45 1 7.1702 -1.7165 4.8247 46 1 8.9653 -3.3886 5.1264 47 1 7.3690 -4.1770 5.1482 48 1 9.2984 -4.0337 2.7856 49 1 8.8774 -5.4852 3.7305 50 1 9.8569 -7.3925 1.7809 51 1 5.7058 -3.9272 1.4655 52 1 7.2315 -3.0188 1.3089 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878949092.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:29:11 Heat of formation + Delta-G solvation = 25.127743 kcal Electronic energy + Delta-G solvation = -30028.248794 eV Core-core repulsion = 26186.373597 eV Total energy + Delta-G solvation = -3841.875197 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.62660 -38.90390 -37.81805 -36.78863 -34.68635 -32.97433 -31.11247 -30.74447 -30.42828 -30.19287 -28.76985 -25.95050 -25.27522 -23.67103 -23.18543 -22.25308 -22.05095 -20.92321 -20.31318 -19.46651 -18.98114 -17.59877 -16.68191 -16.41113 -15.69789 -15.39219 -14.94139 -14.88286 -14.74587 -14.48158 -14.17683 -13.89593 -13.63032 -13.44944 -13.42295 -13.34273 -13.14213 -12.78063 -12.51138 -12.34148 -12.28835 -12.19133 -12.13688 -11.96926 -11.27358 -11.12387 -11.03037 -11.00640 -10.74992 -10.59225 -10.50942 -10.26170 -10.24150 -10.19445 -9.96665 -9.78819 -9.54425 -9.41892 -8.88506 -8.72667 -8.50360 -8.35383 -6.60261 -5.81706 -3.31362 1.44077 1.53571 2.63179 3.22421 3.33770 3.40876 3.42356 3.57722 3.95384 4.42737 4.45046 4.47743 4.61040 4.70675 4.97619 5.03606 5.08189 5.12133 5.15710 5.31315 5.36043 5.43361 5.44367 5.47524 5.48613 5.53380 5.62310 5.66570 5.70178 5.77042 5.83489 5.89177 5.98021 6.01535 6.09816 6.11807 6.24683 6.33791 6.37953 6.55482 6.58055 6.59323 6.59809 6.69198 6.70659 6.78726 6.85464 6.97544 7.10944 7.37078 7.64042 7.68818 7.76311 8.40019 8.45927 9.19547 9.80823 10.41410 11.26491 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015584 B = 0.002469 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.312354 B =11336.216485 C =12302.587756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.062 4.062 3 C -0.013 4.013 4 C -0.108 4.108 5 C -0.120 4.120 6 C -0.128 4.128 7 C -0.115 4.115 8 C -0.099 4.099 9 C -0.146 4.146 10 C -0.175 4.175 11 H 0.126 0.874 12 C 0.533 3.467 13 O -0.524 6.524 14 N -0.721 5.721 15 C 0.130 3.870 16 C -0.117 4.117 17 H 0.072 0.928 18 C -0.099 4.099 19 C -0.142 4.142 20 C 0.173 3.827 21 N -0.591 5.591 22 C -0.258 4.258 23 H 0.061 0.939 24 C 0.008 3.992 25 N -0.901 5.901 26 Si 0.902 3.098 27 H -0.286 1.286 28 H -0.289 1.289 29 H -0.279 1.279 30 C 0.155 3.845 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.103 0.897 41 H 0.402 0.598 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.046 0.954 46 H 0.049 0.951 47 H 0.053 0.947 48 H 0.018 0.982 49 H 0.079 0.921 50 H 0.254 0.746 51 H 0.050 0.950 52 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.405 15.939 -2.574 22.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.063 4.063 3 C -0.013 4.013 4 C -0.126 4.126 5 C -0.138 4.138 6 C -0.146 4.146 7 C -0.133 4.133 8 C -0.117 4.117 9 C -0.183 4.183 10 C -0.196 4.196 11 H 0.144 0.856 12 C 0.319 3.681 13 O -0.400 6.400 14 N -0.372 5.372 15 C 0.006 3.994 16 C -0.138 4.138 17 H 0.090 0.910 18 C -0.137 4.137 19 C -0.181 4.181 20 C 0.047 3.953 21 N -0.313 5.313 22 C -0.387 4.387 23 H 0.079 0.921 24 C -0.192 4.192 25 N -0.544 5.544 26 Si 0.731 3.269 27 H -0.213 1.213 28 H -0.215 1.215 29 H -0.204 1.204 30 C 0.029 3.971 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.237 0.763 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.037 0.963 49 H 0.097 0.903 50 H 0.064 0.936 51 H 0.068 0.932 52 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -14.967 16.641 -2.533 22.524 hybrid contribution -0.111 -1.570 0.082 1.576 sum -15.078 15.071 -2.450 21.459 Atomic orbital electron populations 1.21361 0.90764 1.02540 1.02330 1.20222 0.94540 0.88366 1.03152 1.18646 0.94750 0.92129 0.95811 1.20721 1.00209 0.93007 0.98684 1.20975 0.96606 0.96871 0.99311 1.21004 0.97041 0.98955 0.97595 1.20980 0.99430 0.93479 0.99410 1.20833 0.95251 0.96686 0.98894 1.23278 1.03147 1.00386 0.91470 1.22457 0.97928 1.03407 0.95817 0.85584 1.19590 0.84342 0.85463 0.78733 1.90770 1.72083 1.19173 1.57991 1.46029 1.23202 1.10175 1.57842 1.21410 0.84174 0.97495 0.96273 1.21950 0.97255 0.94855 0.99740 0.91003 1.21332 0.96347 0.97789 0.98261 1.22178 0.99298 0.96575 1.00064 1.20725 0.88453 0.97843 0.88282 1.43962 1.32126 1.00912 1.54294 1.19088 0.91423 0.85366 1.42860 0.92099 1.25218 0.95646 0.98832 0.99461 1.70001 0.99861 1.31911 1.52617 0.86319 0.77681 0.85006 0.77847 1.21305 1.21549 1.20424 1.20897 0.95285 0.88924 0.92018 0.91479 0.91777 0.91826 0.86863 0.86723 0.86787 0.86685 0.86867 0.87293 0.87831 0.76337 0.91807 0.92210 0.92521 0.93511 0.93225 0.92789 0.96342 0.90258 0.93576 0.93167 0.96477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 9.11 37.16 0.34 -0.51 16 2 C -0.06 -0.62 2.50 -155.66 -0.39 -1.01 16 3 C -0.01 -0.16 3.23 -104.63 -0.34 -0.50 16 4 C -0.11 -1.27 9.30 -39.58 -0.37 -1.63 16 5 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 6 C -0.13 -1.46 10.05 -39.58 -0.40 -1.86 16 7 C -0.11 -1.38 10.05 -39.58 -0.40 -1.78 16 8 C -0.10 -1.24 8.00 -39.59 -0.32 -1.55 16 9 C -0.15 -1.35 9.20 -26.73 -0.25 -1.59 16 10 C -0.17 -1.83 5.91 -91.77 -0.54 -2.37 16 11 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 12 C 0.53 7.30 7.54 -10.99 -0.08 7.22 16 13 O -0.52 -8.71 13.16 5.55 0.07 -8.64 16 14 N -0.72 -9.63 5.33 -60.29 -0.32 -9.95 16 15 C 0.13 1.93 5.07 -4.05 -0.02 1.91 16 16 C -0.12 -1.93 2.37 -90.50 -0.21 -2.15 16 17 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 18 C -0.10 -1.64 5.17 -26.69 -0.14 -1.78 16 19 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 20 C 0.17 4.07 5.24 -3.71 -0.02 4.05 16 21 N -0.59 -14.44 2.97 -172.31 -0.51 -14.95 16 22 C -0.26 -6.90 9.54 -15.06 -0.14 -7.04 16 23 H 0.06 1.59 7.86 -52.49 -0.41 1.18 16 24 C 0.01 0.21 4.99 -17.43 -0.09 0.13 16 25 N -0.90 -25.92 11.35 55.49 0.63 -25.29 16 26 Si 0.90 21.27 29.57 -169.99 -5.03 16.24 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 29 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 30 C 0.16 3.12 5.60 -3.71 -0.02 3.10 16 31 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.11 1.15 7.72 -52.49 -0.40 0.74 16 35 H 0.11 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.11 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.11 1.33 6.00 -52.48 -0.32 1.01 16 39 H 0.11 0.78 8.05 -51.93 -0.42 0.37 16 40 H 0.10 1.05 6.16 -51.93 -0.32 0.73 16 41 H 0.40 4.88 7.70 -40.82 -0.31 4.56 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.08 2.09 6.37 -51.93 -0.33 1.76 16 50 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 51 H 0.05 0.97 7.14 -51.93 -0.37 0.60 16 52 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 407.70 15.07 6.14 6.14 Total: -1.00 -31.46 407.70 -11.72 -43.19 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -8.77 Total: 5.19 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -3.94 Total: -11.95 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: -0.20 Total: -50.18 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.07 Total: -8.64 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.46 -11.72 -43.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878949092.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.316 kcal (2) G-P(sol) polarization free energy of solvation -31.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds