Wall clock time and date at job start Wed Apr 1 2020 02:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 115.55327 * 2 1 4 4 C 1.38235 * 120.00195 * 70.81307 * 3 2 1 5 5 C 1.38233 * 119.99830 * 179.74707 * 4 3 2 6 6 C 1.38238 * 119.99951 * 0.55260 * 5 4 3 7 7 C 1.38233 * 120.00163 * 359.70230 * 6 5 4 8 8 C 1.38234 * 119.99767 * 0.02562 * 7 6 5 9 9 C 1.53004 * 117.49864 * 214.28755 * 2 1 3 10 10 C 1.52998 * 60.00133 * 252.51486 * 9 2 1 11 11 H 1.09001 * 117.52516 * 107.48207 * 10 9 2 12 12 C 1.50709 * 117.49645 * 252.51440 * 10 9 2 13 13 O 1.21280 * 119.99861 * 31.26488 * 12 10 9 14 14 N 1.34775 * 119.99607 * 211.26582 * 12 10 9 15 15 C 1.46505 * 119.99726 * 179.97438 * 14 12 10 16 16 C 1.52998 * 109.47053 * 180.02562 * 15 14 12 17 17 C 1.53041 * 109.46228 * 295.07328 * 16 15 14 18 18 C 1.53195 * 109.31162 * 178.61643 * 17 16 15 19 19 N 1.46923 * 108.77574 * 54.63118 * 18 17 16 20 20 C 1.36943 * 120.62717 * 126.37144 * 19 18 17 21 21 H 1.07997 * 120.00069 * 335.49995 * 20 19 18 22 22 C 1.38811 * 119.99788 * 155.50018 * 20 19 18 23 23 N 1.31620 * 119.99965 * 338.97534 * 22 20 19 24 24 Si 1.86802 * 119.99884 * 158.97502 * 22 20 19 25 25 H 1.48501 * 109.47088 * 59.99881 * 24 22 20 26 26 H 1.48506 * 109.46878 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47145 * 300.00031 * 24 22 20 28 28 C 1.46922 * 118.74367 * 306.38936 * 19 18 17 29 29 C 1.53036 * 109.45944 * 174.99985 * 16 15 14 30 30 H 1.09000 * 109.47545 * 274.32945 * 1 2 3 31 31 H 1.09007 * 109.46825 * 154.33280 * 1 2 3 32 32 H 1.08997 * 109.47320 * 34.33705 * 1 2 3 33 33 H 1.08004 * 119.99575 * 359.97438 * 4 3 2 34 34 H 1.07997 * 119.99915 * 180.27257 * 5 4 3 35 35 H 1.08002 * 119.99465 * 179.72488 * 6 5 4 36 36 H 1.07999 * 120.00103 * 179.97438 * 7 6 5 37 37 H 1.08008 * 119.99772 * 179.97438 * 8 7 6 38 38 H 1.08998 * 117.49662 * 0.02562 * 9 2 1 39 39 H 1.08995 * 117.50051 * 145.02120 * 9 2 1 40 40 H 0.97003 * 120.00277 * 0.02562 * 14 12 10 41 41 H 1.08999 * 109.47018 * 300.00332 * 15 14 12 42 42 H 1.08996 * 109.46706 * 60.00037 * 15 14 12 43 43 H 1.09003 * 109.45819 * 55.03187 * 16 15 14 44 44 H 1.09002 * 109.49482 * 298.56523 * 17 16 15 45 45 H 1.08996 * 109.49898 * 58.66058 * 17 16 15 46 46 H 1.09000 * 109.58560 * 294.84365 * 18 17 16 47 47 H 1.08996 * 109.70117 * 174.48919 * 18 17 16 48 48 H 0.97001 * 119.99754 * 179.97438 * 23 22 20 49 49 H 1.08999 * 109.58351 * 293.82795 * 28 19 18 50 50 H 1.08995 * 109.70900 * 173.46935 * 28 19 18 51 51 H 1.08996 * 109.50337 * 301.33579 * 29 16 15 52 52 H 1.09004 * 109.49795 * 61.43912 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1800 1.3596 0.0000 4 6 2.1232 2.1529 1.1306 5 6 2.7240 3.3978 1.1323 6 6 3.3718 3.8542 -0.0005 7 6 3.4240 3.0631 -1.1328 8 6 2.8281 1.8158 -1.1326 9 6 2.2364 -1.1213 -0.7646 10 6 2.2364 -1.1208 0.7654 11 1 1.6111 -1.8578 1.2694 12 6 3.5292 -0.7806 1.4612 13 8 4.3117 -0.0114 0.9445 14 7 3.8158 -1.3312 2.6575 15 6 5.0728 -1.0010 3.3336 16 6 5.1503 -1.7547 4.6628 17 6 4.0439 -1.2576 5.5960 18 6 4.1029 -2.0385 6.9127 19 7 5.4580 -1.9255 7.4692 20 6 5.6510 -1.4866 8.7520 21 1 4.9082 -0.8628 9.2268 22 6 6.8014 -1.8435 9.4419 23 7 7.4938 -2.8978 9.0661 24 14 7.3669 -0.8273 10.9038 25 1 6.3088 -0.8277 11.9459 26 1 8.6115 -1.4138 11.4625 27 1 7.6294 0.5671 10.4655 28 6 6.6020 -2.2919 6.6233 29 6 6.5150 -1.5081 5.3099 30 1 -0.3634 0.0776 1.0247 31 1 -0.3633 -0.9263 -0.4452 32 1 -0.3634 0.8485 -0.5796 33 1 1.6126 1.7984 2.0138 34 1 2.6834 4.0158 2.0171 35 1 3.8373 4.8287 -0.0005 36 1 3.9297 3.4198 -2.0179 37 1 2.8686 1.1978 -2.0175 38 1 1.6112 -1.8587 -1.2679 39 1 3.1715 -0.8758 -1.2679 40 1 3.1901 -1.9467 3.0705 41 1 5.9123 -1.2916 2.7020 42 1 5.1135 0.0720 3.5210 43 1 5.0212 -2.8220 4.4830 44 1 4.1867 -0.1957 5.7962 45 1 3.0735 -1.4122 5.1245 46 1 3.8708 -3.0871 6.7263 47 1 3.3825 -1.6245 7.6181 48 1 8.2979 -3.1470 9.5480 49 1 6.5736 -3.3611 6.4134 50 1 7.5319 -2.0447 7.1355 51 1 7.3033 -1.8411 4.6348 52 1 6.6345 -0.4438 5.5128 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878960187.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:11 Heat of formation + Delta-G solvation = 24.088367 kcal Electronic energy + Delta-G solvation = -29918.435829 eV Core-core repulsion = 26076.515562 eV Total energy + Delta-G solvation = -3841.920268 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.66228 -39.00740 -37.90410 -36.84477 -34.85110 -32.82610 -31.01323 -30.91615 -30.64416 -29.72920 -28.92922 -27.07554 -24.67213 -23.41999 -23.25183 -22.40152 -22.10591 -20.99332 -20.37467 -19.57000 -19.04023 -17.64916 -16.76455 -16.53689 -15.82697 -15.21222 -15.04866 -14.95795 -14.69405 -14.61100 -14.14409 -13.96773 -13.60080 -13.50843 -13.47795 -13.36897 -13.17860 -12.98352 -12.71141 -12.38504 -12.34533 -12.29183 -12.06380 -11.85746 -11.35008 -11.23281 -11.15105 -11.00715 -10.70130 -10.63005 -10.49080 -10.25911 -10.24188 -10.22462 -9.95324 -9.78141 -9.54094 -9.42406 -8.96063 -8.89607 -8.63419 -8.44405 -6.72218 -5.79481 -3.16779 1.32418 1.41541 2.45145 3.19641 3.38923 3.45193 3.46990 3.59570 3.75731 4.31903 4.44675 4.50688 4.53006 4.70301 4.90206 4.94842 4.96232 5.06847 5.12523 5.23839 5.31194 5.35491 5.36792 5.39937 5.41631 5.44242 5.59202 5.59875 5.61276 5.72403 5.82835 5.88237 5.96044 5.98910 6.00296 6.06004 6.16109 6.31819 6.44382 6.44429 6.49251 6.51747 6.56131 6.59832 6.69893 6.76556 6.80843 6.97064 6.98568 7.36786 7.60157 7.65158 7.79596 8.32616 8.43048 9.20779 9.85894 10.40892 11.29201 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017203 B = 0.002282 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.226572 B =12269.482014 C =12871.288487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.059 4.059 3 C -0.031 4.031 4 C -0.104 4.104 5 C -0.117 4.117 6 C -0.123 4.123 7 C -0.119 4.119 8 C -0.099 4.099 9 C -0.136 4.136 10 C -0.180 4.180 11 H 0.121 0.879 12 C 0.536 3.464 13 O -0.530 6.530 14 N -0.723 5.723 15 C 0.126 3.874 16 C -0.090 4.090 17 C -0.126 4.126 18 C 0.146 3.854 19 N -0.592 5.592 20 C -0.252 4.252 21 H 0.066 0.934 22 C 0.000 4.000 23 N -0.902 5.902 24 Si 0.900 3.100 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.284 1.284 28 C 0.170 3.830 29 C -0.132 4.132 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.399 0.601 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.046 0.954 46 H 0.016 0.984 47 H 0.052 0.948 48 H 0.254 0.746 49 H 0.016 0.984 50 H 0.090 0.910 51 H 0.050 0.950 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.497 5.848 -21.779 26.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.060 4.060 3 C -0.031 4.031 4 C -0.122 4.122 5 C -0.135 4.135 6 C -0.141 4.141 7 C -0.137 4.137 8 C -0.117 4.117 9 C -0.173 4.173 10 C -0.201 4.201 11 H 0.138 0.862 12 C 0.322 3.678 13 O -0.406 6.406 14 N -0.374 5.374 15 C 0.003 3.997 16 C -0.109 4.109 17 C -0.165 4.165 18 C 0.019 3.981 19 N -0.315 5.315 20 C -0.382 4.382 21 H 0.084 0.916 22 C -0.198 4.198 23 N -0.546 5.546 24 Si 0.729 3.271 25 H -0.209 1.209 26 H -0.217 1.217 27 H -0.211 1.211 28 C 0.044 3.956 29 C -0.172 4.172 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.233 0.767 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.033 0.967 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.034 0.966 50 H 0.108 0.892 51 H 0.069 0.931 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.760 6.329 -22.031 26.234 hybrid contribution 0.174 0.034 1.144 1.158 sum -12.586 6.363 -20.887 25.203 Atomic orbital electron populations 1.21367 0.90524 1.02504 1.02539 1.20175 0.94435 0.88109 1.03284 1.18736 0.97436 0.92913 0.94057 1.20826 0.99688 0.94337 0.97341 1.21056 0.98158 0.96194 0.98122 1.21081 0.99696 0.99789 0.93537 1.21034 0.99751 0.94684 0.98271 1.20828 0.97380 0.95808 0.97666 1.23200 1.03034 0.99887 0.91219 1.22468 0.98107 1.03556 0.96004 0.86151 1.19509 0.86748 0.80487 0.81085 1.90726 1.49671 1.34860 1.65365 1.46012 1.22657 1.48201 1.20539 1.21529 0.84956 1.00043 0.93145 1.21304 0.97844 0.99189 0.92515 1.22061 0.96089 1.00969 0.97400 1.20875 0.88651 0.95961 0.92594 1.44082 0.99384 1.77150 1.10910 1.19161 1.05334 1.23805 0.89864 0.91631 1.24928 1.00287 0.96557 0.98026 1.70062 1.18700 1.23454 1.42424 0.86407 0.78023 0.80245 0.82390 1.20939 1.21652 1.21069 1.20794 0.93155 0.94316 0.87347 1.22167 0.93931 1.01790 0.99327 0.91689 0.91757 0.91479 0.86786 0.86364 0.86491 0.86445 0.86546 0.87604 0.87547 0.76698 0.92024 0.91796 0.91397 0.92217 0.93505 0.96659 0.92915 0.93600 0.96553 0.89161 0.93100 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 9.83 37.16 0.37 -0.39 16 2 C -0.06 -0.54 2.24 -155.66 -0.35 -0.89 16 3 C -0.03 -0.35 3.00 -104.62 -0.31 -0.67 16 4 C -0.10 -1.23 9.26 -39.58 -0.37 -1.59 16 5 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 6 C -0.12 -1.35 10.05 -39.58 -0.40 -1.74 16 7 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 8 C -0.10 -1.09 9.15 -39.58 -0.36 -1.46 16 9 C -0.14 -1.15 8.91 -26.73 -0.24 -1.39 16 10 C -0.18 -1.71 5.91 -91.77 -0.54 -2.26 16 11 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 12 C 0.54 6.97 7.07 -10.98 -0.08 6.89 16 13 O -0.53 -8.71 14.65 5.56 0.08 -8.63 16 14 N -0.72 -8.91 5.27 -60.29 -0.32 -9.23 16 15 C 0.13 1.83 5.07 -4.04 -0.02 1.81 16 16 C -0.09 -1.42 2.19 -90.58 -0.20 -1.62 16 17 C -0.13 -2.06 5.25 -26.61 -0.14 -2.20 16 18 C 0.15 2.95 6.52 -3.71 -0.02 2.93 16 19 N -0.59 -14.67 3.01 -172.32 -0.52 -15.19 16 20 C -0.25 -6.91 9.60 -15.06 -0.14 -7.05 16 21 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 22 C 0.00 0.01 4.85 -17.43 -0.08 -0.07 16 23 N -0.90 -26.14 11.19 55.49 0.62 -25.52 16 24 Si 0.90 21.71 29.60 -169.99 -5.03 16.68 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 28 C 0.17 3.99 5.36 -3.71 -0.02 3.97 16 29 C -0.13 -2.48 5.36 -26.61 -0.14 -2.62 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.34 7.90 -51.92 -0.41 -0.07 16 32 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 33 H 0.11 1.27 8.06 -52.48 -0.42 0.84 16 34 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.12 1.10 7.37 -52.48 -0.39 0.72 16 38 H 0.11 0.63 8.05 -51.93 -0.42 0.22 16 39 H 0.11 1.05 7.32 -51.93 -0.38 0.67 16 40 H 0.40 4.07 7.65 -40.82 -0.31 3.76 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.05 0.63 7.15 -51.93 -0.37 0.26 16 46 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.05 1.06 7.92 -51.93 -0.41 0.65 16 48 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.09 2.40 5.91 -51.93 -0.31 2.09 16 51 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 52 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 411.92 15.07 6.21 6.21 Total: -1.00 -32.07 411.92 -11.69 -43.77 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -8.88 Total: 3.69 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -3.85 Total: -11.78 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: -0.21 Total: -49.94 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.08 Total: -8.63 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.07 -11.69 -43.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878960187.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.855 kcal (2) G-P(sol) polarization free energy of solvation -32.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds