Wall clock time and date at job start Wed Apr 1 2020 02:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46898 * 109.45897 * 2 1 4 4 C 1.47479 * 110.99535 * 198.43139 * 3 2 1 5 5 C 1.53515 * 87.93258 * 138.70504 * 4 3 2 6 6 C 1.47475 * 110.99870 * 294.39893 * 3 2 1 7 7 C 1.53037 * 109.45863 * 240.02539 * 2 1 3 8 8 C 1.53193 * 109.31385 * 301.34495 * 7 2 1 9 9 N 1.46923 * 108.77536 * 305.36518 * 8 7 2 10 10 C 1.34782 * 120.63201 * 233.58037 * 9 8 7 11 11 O 1.21274 * 119.99751 * 0.02562 * 10 9 8 12 12 C 1.50694 * 119.99856 * 179.97438 * 10 9 8 13 13 C 1.50705 * 109.47142 * 180.02562 * 12 10 9 14 14 C 1.37636 * 120.12974 * 264.73091 * 13 12 10 15 15 C 1.38609 * 120.24504 * 179.72111 * 14 13 12 16 16 C 1.38654 * 120.50259 * 0.55315 * 15 14 13 17 17 C 1.37595 * 120.24861 * 359.72609 * 16 15 14 18 18 C 1.40698 * 120.12386 * 85.00388 * 13 12 10 19 19 C 1.41402 * 120.24341 * 359.97438 * 18 13 12 20 20 H 1.07997 * 120.00000 * 333.34005 * 19 18 13 21 21 C 1.39950 * 119.99655 * 153.33480 * 19 18 13 22 22 N 1.30828 * 119.99903 * 343.80705 * 21 19 18 23 23 Si 1.86800 * 119.99804 * 163.80272 * 21 19 18 24 24 H 1.48501 * 109.46835 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47108 * 120.00260 * 23 21 19 26 26 H 1.48504 * 109.47124 * 240.00383 * 23 21 19 27 27 C 1.46930 * 118.73642 * 53.86366 * 9 8 7 28 28 C 1.53042 * 109.45681 * 119.95875 * 2 1 3 29 29 H 1.09000 * 109.47350 * 180.47306 * 1 2 3 30 30 H 1.08999 * 109.47240 * 300.47504 * 1 2 3 31 31 H 1.09005 * 109.47190 * 60.47012 * 1 2 3 32 32 H 1.09002 * 113.47808 * 253.46604 * 4 3 2 33 33 H 1.09000 * 113.48037 * 23.93655 * 4 3 2 34 34 H 1.09007 * 114.16887 * 220.33124 * 5 4 3 35 35 H 1.08993 * 114.17210 * 87.62051 * 5 4 3 36 36 H 1.08997 * 113.48097 * 336.06720 * 6 3 2 37 37 H 1.09007 * 113.47494 * 106.47195 * 6 3 2 38 38 H 1.09001 * 109.49406 * 181.39527 * 7 2 1 39 39 H 1.09004 * 109.50045 * 61.29556 * 7 2 1 40 40 H 1.09002 * 109.58984 * 185.57888 * 8 7 2 41 41 H 1.09008 * 109.70459 * 65.22174 * 8 7 2 42 42 H 1.08992 * 109.47684 * 300.00969 * 12 10 9 43 43 H 1.09006 * 109.47310 * 60.00719 * 12 10 9 44 44 H 1.08001 * 119.87585 * 359.97352 * 14 13 12 45 45 H 1.08003 * 119.75012 * 180.29979 * 15 14 13 46 46 H 1.07998 * 119.87541 * 179.74633 * 16 15 14 47 47 H 1.07998 * 120.12643 * 179.97438 * 17 16 15 48 48 H 0.97000 * 119.99098 * 179.97438 * 22 21 19 49 49 H 1.08997 * 109.58782 * 65.92405 * 27 9 8 50 50 H 1.09008 * 109.58215 * 186.34963 * 27 9 8 51 51 H 1.09003 * 109.49219 * 178.60674 * 28 2 1 52 52 H 1.09000 * 109.49693 * 298.67196 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0194 1.3851 0.0000 4 6 3.4271 1.4481 -0.4353 5 6 3.0615 2.6976 -1.2489 6 6 1.6592 2.0728 -1.2538 7 6 2.0398 -0.7209 -1.2500 8 6 1.4995 -2.1543 -1.2639 9 7 1.8625 -2.8089 0.0004 10 6 2.5155 -3.9879 0.0006 11 8 2.8095 -4.5184 -1.0496 12 6 2.8814 -4.6464 1.3057 13 6 3.5996 -5.9424 1.0306 14 6 2.9019 -7.1286 1.0126 15 6 3.5591 -8.3213 0.7541 16 6 4.9260 -8.3358 0.5223 17 6 5.6447 -7.1625 0.5411 18 6 4.9870 -5.9449 0.7968 19 6 5.7151 -4.7329 0.8180 20 1 5.2208 -3.8019 0.5831 21 6 7.0762 -4.7400 1.1435 22 7 7.6036 -5.7849 1.7279 23 14 8.1398 -3.2574 0.7433 24 1 7.3094 -2.2147 0.0887 25 1 8.7208 -2.7123 1.9965 26 1 9.2346 -3.6664 -0.1730 27 6 1.4945 -2.1567 1.2646 28 6 2.0398 -0.7206 1.2502 29 1 -0.3634 -1.0276 0.0085 30 1 -0.3634 0.5212 0.8857 31 1 -0.3634 0.5065 -0.8942 32 1 4.1246 1.6484 0.3780 33 1 3.7293 0.6016 -1.0518 34 1 3.5326 2.7445 -2.2308 35 1 3.1324 3.6306 -0.6900 36 1 1.4896 1.3930 -2.0888 37 1 0.8576 2.8018 -1.1344 38 1 3.1296 -0.7430 -1.2381 39 1 1.6957 -0.1938 -2.1398 40 1 1.9381 -2.7021 -2.0980 41 1 0.4146 -2.1372 -1.3682 42 1 3.5325 -3.9846 1.8767 43 1 1.9755 -4.8471 1.8780 44 1 1.8376 -7.1297 1.1966 45 1 3.0029 -9.2470 0.7371 46 1 5.4285 -9.2713 0.3260 47 1 6.7094 -7.1761 0.3607 48 1 8.5471 -5.7898 1.9531 49 1 0.4092 -2.1375 1.3634 50 1 1.9299 -2.7061 2.0993 51 1 3.1296 -0.7426 1.2384 52 1 1.6962 -0.1929 2.1399 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882508285.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:36 Heat of formation + Delta-G solvation = 33.690620 kcal Electronic energy + Delta-G solvation = -31314.789464 eV Core-core repulsion = 27473.285582 eV Total energy + Delta-G solvation = -3841.503883 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 7.03 seconds Orbital eigenvalues (eV) -41.36961 -39.40345 -37.59239 -36.60569 -33.58810 -33.34077 -31.99095 -30.91443 -29.42973 -28.48872 -27.81005 -26.74144 -25.71630 -25.02701 -23.53061 -23.38180 -20.91384 -20.74396 -20.09368 -18.88448 -17.77597 -17.21285 -17.09334 -15.99793 -15.87816 -15.58810 -15.40801 -15.06022 -14.74152 -14.50966 -14.41791 -14.08102 -13.60724 -13.50075 -13.03884 -12.99289 -12.66642 -12.54762 -12.50730 -12.17201 -12.11108 -11.77741 -11.67309 -11.57462 -11.47778 -11.16332 -11.12376 -11.03383 -10.96613 -10.91039 -10.88085 -10.69516 -10.63155 -10.37687 -10.31965 -9.45106 -9.33151 -9.15256 -9.10902 -8.85290 -8.31701 -7.28441 -7.25337 -6.71324 -4.31586 2.79312 2.97578 3.07807 3.12503 3.28048 3.31154 3.43440 3.79680 3.95129 4.27834 4.49949 4.53259 4.67541 4.70370 4.81003 4.96056 5.00680 5.10652 5.17750 5.25618 5.34732 5.39208 5.47785 5.53345 5.59064 5.61648 5.64478 5.74874 5.78243 5.80122 5.82373 5.88613 5.89157 5.97962 6.01128 6.07813 6.12668 6.20190 6.30798 6.38179 6.45358 6.53528 6.79695 6.86765 6.92315 7.11662 7.31844 7.44780 7.66176 7.81869 7.96040 8.10116 8.15621 8.34464 8.67496 8.85021 8.94713 9.04389 10.23424 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011745 B = 0.003839 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.328126 B = 7291.307501 C = 9024.240938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.076 3.924 3 N -0.461 5.461 4 C -0.017 4.017 5 C -0.147 4.147 6 C -0.008 4.008 7 C -0.167 4.167 8 C 0.118 3.882 9 N -0.625 5.625 10 C 0.519 3.481 11 O -0.521 6.521 12 C -0.069 4.069 13 C -0.179 4.179 14 C -0.082 4.082 15 C -0.239 4.239 16 C -0.107 4.107 17 C -0.159 4.159 18 C 0.130 3.870 19 C -0.456 4.456 20 H 0.073 0.927 21 C 0.078 3.922 22 N -0.796 5.796 23 Si 0.900 3.100 24 H -0.262 1.262 25 H -0.275 1.275 26 H -0.272 1.272 27 C 0.110 3.890 28 C -0.117 4.117 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.115 0.885 48 H 0.278 0.722 49 H 0.067 0.933 50 H 0.091 0.909 51 H 0.069 0.931 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.659 14.869 -1.899 18.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.014 4.014 3 N -0.183 5.183 4 C -0.146 4.146 5 C -0.185 4.185 6 C -0.137 4.137 7 C -0.206 4.206 8 C -0.005 4.005 9 N -0.362 5.362 10 C 0.309 3.691 11 O -0.395 6.395 12 C -0.108 4.108 13 C -0.181 4.181 14 C -0.100 4.100 15 C -0.258 4.258 16 C -0.126 4.126 17 C -0.178 4.178 18 C 0.127 3.873 19 C -0.486 4.486 20 H 0.091 0.909 21 C -0.139 4.139 22 N -0.422 5.422 23 Si 0.725 3.275 24 H -0.186 1.186 25 H -0.200 1.200 26 H -0.197 1.197 27 C -0.014 4.014 28 C -0.155 4.155 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.114 0.886 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.133 0.867 48 H 0.089 0.911 49 H 0.085 0.915 50 H 0.110 0.890 51 H 0.088 0.912 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.490 14.718 -1.693 18.153 hybrid contribution 0.785 0.278 -0.855 1.194 sum -9.705 14.996 -2.548 18.043 Atomic orbital electron populations 1.21909 0.93506 1.02249 1.02119 1.21456 0.95815 0.89077 0.95009 1.69202 1.05096 1.12573 1.31393 1.24049 0.92850 0.98158 0.99512 1.23083 0.96573 0.98285 1.00567 1.23843 0.98235 0.98354 0.93264 1.22738 1.02299 0.96890 0.98636 1.21380 0.99043 0.91872 0.88240 1.48245 1.59585 1.22236 1.06136 1.21251 0.75739 0.79428 0.92712 1.90662 1.52009 1.62948 1.33863 1.20284 0.99830 0.96982 0.93746 1.19074 0.94640 0.91397 1.13017 1.20299 0.96620 0.92924 1.00198 1.20304 0.94701 0.96058 1.14734 1.20670 0.93989 0.96903 1.01025 1.21269 0.99673 0.91922 1.04923 1.17330 0.90030 0.93115 0.86796 1.19474 0.93375 0.94412 1.41324 0.90875 1.25856 0.98536 0.97086 0.92470 1.69831 1.14025 1.29492 1.28814 0.86390 0.80076 0.82029 0.79007 1.18595 1.20011 1.19725 1.21818 0.99722 0.92914 0.86955 1.21926 1.01528 0.94784 0.97295 0.91492 0.91864 0.92853 0.89958 0.89734 0.90883 0.89230 0.90698 0.90163 0.90275 0.90663 0.89162 0.92051 0.88632 0.90728 0.89799 0.89675 0.89598 0.86665 0.91066 0.91525 0.89024 0.91203 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 7.70 37.16 0.29 -0.99 16 2 C 0.08 0.79 0.47 -131.56 -0.06 0.73 16 3 N -0.46 -4.76 6.13 -228.87 -1.40 -6.16 16 4 C -0.02 -0.18 7.06 -7.55 -0.05 -0.23 16 5 C -0.15 -1.23 8.47 -26.20 -0.22 -1.45 16 6 C -0.01 -0.07 6.44 -7.56 -0.05 -0.12 16 7 C -0.17 -1.89 3.88 -26.61 -0.10 -2.00 16 8 C 0.12 1.58 5.96 -3.71 -0.02 1.56 16 9 N -0.63 -9.47 2.97 -172.50 -0.51 -9.99 16 10 C 0.52 10.29 7.33 -10.99 -0.08 10.21 16 11 O -0.52 -12.61 15.45 5.56 0.09 -12.53 16 12 C -0.07 -1.37 3.53 -29.04 -0.10 -1.47 16 13 C -0.18 -4.36 4.43 -103.91 -0.46 -4.82 16 14 C -0.08 -1.92 9.66 -39.66 -0.38 -2.30 16 15 C -0.24 -5.63 10.05 -39.29 -0.39 -6.02 16 16 C -0.11 -2.65 10.02 -39.66 -0.40 -3.05 16 17 C -0.16 -4.28 8.68 -38.88 -0.34 -4.62 16 18 C 0.13 3.49 5.55 -106.82 -0.59 2.90 16 19 C -0.46 -12.08 8.12 -37.74 -0.31 -12.38 16 20 H 0.07 1.91 6.70 -52.49 -0.35 1.55 16 21 C 0.08 1.96 5.16 -17.34 -0.09 1.87 16 22 N -0.80 -20.68 11.01 55.55 0.61 -20.07 16 23 Si 0.90 19.01 29.59 -169.99 -5.03 13.98 16 24 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 25 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 26 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 27 C 0.11 1.30 5.90 -3.49 -0.02 1.28 16 28 C -0.12 -1.32 5.06 -26.39 -0.13 -1.45 16 29 H 0.07 0.61 4.97 -51.93 -0.26 0.35 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.45 7.38 -51.93 -0.38 0.07 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 0.94 4.88 -51.93 -0.25 0.69 16 34 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.62 5.47 -51.93 -0.28 0.34 16 37 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 38 H 0.08 1.04 5.76 -51.93 -0.30 0.75 16 39 H 0.08 0.74 5.79 -51.93 -0.30 0.44 16 40 H 0.09 1.42 7.01 -51.93 -0.36 1.06 16 41 H 0.06 0.71 6.72 -51.92 -0.35 0.36 16 42 H 0.10 1.88 6.63 -51.93 -0.34 1.54 16 43 H 0.07 1.25 7.84 -51.93 -0.41 0.84 16 44 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 45 H 0.08 1.78 8.06 -52.48 -0.42 1.35 16 46 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 47 H 0.12 3.19 6.27 -52.49 -0.33 2.87 16 48 H 0.28 6.59 8.30 -40.82 -0.34 6.26 16 49 H 0.07 0.67 6.67 -51.93 -0.35 0.32 16 50 H 0.09 1.08 5.93 -51.92 -0.31 0.77 16 51 H 0.07 0.92 7.86 -51.93 -0.41 0.51 16 52 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 387.14 15.07 5.83 5.83 Total: -1.00 -30.60 387.14 -11.86 -42.46 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -7.93 Total: 8.80 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -3.52 Total: -22.34 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: -1.30 Total: -36.21 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.09 Total: -12.53 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.60 -11.86 -42.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882508285.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.153 kcal (2) G-P(sol) polarization free energy of solvation -30.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.03 seconds