Wall clock time and date at job start Wed Apr 1 2020 02:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.49532 * 2 1 4 4 C 1.53187 * 109.49784 * 120.06058 * 2 1 3 5 5 N 1.46930 * 108.77426 * 174.58684 * 4 2 1 6 6 C 1.36939 * 120.62751 * 126.37138 * 5 4 2 7 7 H 1.07993 * 120.00107 * 326.89145 * 6 5 4 8 8 C 1.38813 * 119.99931 * 146.88770 * 6 5 4 9 9 N 1.31621 * 119.99807 * 335.22891 * 8 6 5 10 10 Si 1.86798 * 120.00063 * 155.23265 * 8 6 5 11 11 H 1.48500 * 109.47220 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47308 * 119.99971 * 10 8 6 13 13 H 1.48497 * 109.46819 * 240.00070 * 10 8 6 14 14 C 1.46919 * 118.73970 * 306.64709 * 5 4 2 15 15 C 1.52763 * 109.01043 * 53.30788 * 14 5 4 16 16 C 1.53035 * 109.50079 * 239.90536 * 2 1 3 17 17 H 1.09000 * 109.45864 * 298.68783 * 16 2 1 18 18 N 1.46498 * 109.46261 * 58.65698 * 16 2 1 19 19 C 1.34783 * 120.00305 * 205.00002 * 18 16 2 20 20 O 1.21274 * 119.99698 * 354.96537 * 19 18 16 21 21 C 1.50704 * 119.99943 * 174.96278 * 19 18 16 22 22 C 1.50697 * 115.54754 * 279.19673 * 21 19 18 23 23 C 1.38231 * 119.99695 * 148.43784 * 22 21 19 24 24 C 1.38242 * 119.99891 * 179.76286 * 23 22 21 25 25 C 1.38227 * 119.99906 * 0.50812 * 24 23 22 26 26 C 1.38235 * 120.00007 * 359.74403 * 25 24 23 27 27 C 1.38236 * 120.00026 * 328.70826 * 22 21 19 28 28 C 1.53000 * 117.49492 * 133.48735 * 21 19 18 29 29 C 1.52998 * 117.49519 * 64.86794 * 21 19 18 30 30 H 1.09003 * 109.47402 * 299.93865 * 1 2 3 31 31 H 1.09004 * 109.47161 * 59.93923 * 1 2 3 32 32 H 1.09000 * 109.47212 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46949 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47351 * 300.06519 * 3 2 1 35 35 H 1.08999 * 109.47162 * 60.06315 * 3 2 1 36 36 H 1.09006 * 109.58273 * 54.80625 * 4 2 1 37 37 H 1.09000 * 109.58866 * 294.37928 * 4 2 1 38 38 H 0.96996 * 120.00426 * 357.91980 * 9 8 6 39 39 H 1.09000 * 109.58550 * 173.14359 * 14 5 4 40 40 H 1.09008 * 109.58857 * 293.56877 * 14 5 4 41 41 H 1.09000 * 109.56409 * 185.54969 * 15 14 5 42 42 H 1.08999 * 109.38209 * 65.51309 * 15 14 5 43 43 H 0.96996 * 120.00059 * 25.00795 * 18 16 2 44 44 H 1.07997 * 120.00352 * 359.97438 * 23 22 21 45 45 H 1.08005 * 119.99774 * 180.22972 * 24 23 22 46 46 H 1.08005 * 120.00339 * 179.72431 * 25 24 23 47 47 H 1.08010 * 119.99951 * 179.97438 * 26 25 24 48 48 H 1.07996 * 120.00084 * 0.02562 * 27 22 21 49 49 H 1.08997 * 117.50249 * 0.02562 * 28 21 19 50 50 H 1.08999 * 117.49311 * 145.02094 * 28 21 19 51 51 H 1.09001 * 117.49230 * 214.97822 * 29 21 19 52 52 H 1.08995 * 117.50450 * 359.97137 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0413 -0.7233 1.2498 5 7 3.5046 -0.8287 1.1698 6 6 4.2936 -0.3777 2.1942 7 1 3.9864 0.4791 2.7754 8 6 5.4882 -1.0218 2.4855 9 7 5.6506 -2.2865 2.1588 10 14 6.8651 -0.0940 3.3414 11 1 6.4348 1.3038 3.5986 12 1 7.1840 -0.7593 4.6301 13 1 8.0713 -0.0886 2.4752 14 6 4.1055 -1.4214 -0.0327 15 6 3.5708 -0.6953 -1.2658 16 6 2.0408 -0.7233 -1.2481 17 1 1.6970 -1.7576 -1.2347 18 7 1.5265 -0.0537 -2.4452 19 6 1.3985 -0.7393 -3.5986 20 8 1.7936 -1.8836 -3.6707 21 6 0.7644 -0.0839 -4.7984 22 6 -0.7423 -0.0599 -4.8053 23 6 -1.4141 0.9865 -5.4090 24 6 -2.7963 1.0061 -5.4196 25 6 -3.5066 -0.0154 -4.8174 26 6 -2.8348 -1.0592 -4.2091 27 6 -1.4526 -1.0815 -4.2030 28 6 1.4753 -0.2364 -6.1446 29 6 1.4929 1.1101 -5.4184 30 1 -0.3634 0.5129 0.8905 31 1 -0.3634 0.5148 -0.8895 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1306 1.4418 -0.0005 34 1 1.6765 1.9567 -0.8894 35 1 1.6784 1.9560 0.8905 36 1 1.6052 -1.7212 1.2985 37 1 1.7637 -0.1572 2.1389 38 1 4.9250 -2.7767 1.7418 39 1 5.1895 -1.3157 0.0104 40 1 3.8412 -2.4774 -0.0908 41 1 3.9335 -1.1902 -2.1667 42 1 3.9158 0.3386 -1.2547 43 1 1.2782 0.8832 -2.4079 44 1 -0.8592 1.7871 -5.8754 45 1 -3.3212 1.8218 -5.8946 46 1 -4.5865 0.0021 -4.8218 47 1 -3.3898 -1.8572 -3.7382 48 1 -0.9277 -1.8966 -3.7272 49 1 2.4013 -0.8111 -6.1626 50 1 0.8530 -0.3196 -7.0357 51 1 0.8823 1.9128 -5.8317 52 1 2.4305 1.4220 -4.9583 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941199955.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:19 Heat of formation + Delta-G solvation = 27.619623 kcal Electronic energy + Delta-G solvation = -31274.522636 eV Core-core repulsion = 27432.755495 eV Total energy + Delta-G solvation = -3841.767141 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.76122 -39.45054 -38.25220 -36.48055 -34.82300 -33.13566 -31.46124 -31.19935 -30.79319 -29.78956 -26.97144 -26.11588 -25.42456 -24.29408 -23.12024 -22.75776 -22.17979 -21.45047 -20.64402 -19.67902 -18.36098 -17.60475 -17.28600 -16.67969 -15.85972 -15.47996 -15.14960 -14.91428 -14.49915 -14.31298 -14.26363 -14.03145 -13.71546 -13.67990 -13.50637 -13.33617 -13.11573 -12.92362 -12.73130 -12.34856 -11.99291 -11.96038 -11.63410 -11.56862 -11.36873 -11.29767 -11.03960 -10.94406 -10.93376 -10.81002 -10.68570 -10.59875 -10.31539 -10.12394 -9.96535 -9.88167 -9.63944 -9.26162 -9.16236 -8.83390 -8.69476 -8.30773 -6.80096 -6.08234 -3.26466 1.05137 1.16276 2.65934 3.14620 3.33816 3.50186 3.53308 3.66370 3.75747 4.21880 4.52744 4.56295 4.58158 4.68897 4.76054 4.82389 4.94935 5.01105 5.15609 5.16462 5.29121 5.31592 5.36587 5.38563 5.45368 5.52435 5.61128 5.75386 5.76705 5.78681 5.79611 5.84564 5.89720 5.99110 6.08459 6.19665 6.22142 6.25459 6.28775 6.32639 6.35443 6.42024 6.47375 6.55810 6.70528 6.73786 6.74601 6.83820 6.88510 7.06454 7.19128 7.68218 8.08162 8.35309 8.61252 9.13747 9.86036 10.33492 11.22420 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019407 B = 0.002889 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.402733 B = 9688.084990 C =10196.960764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 C -0.130 4.130 4 C 0.162 3.838 5 N -0.594 5.594 6 C -0.354 4.354 7 H 0.053 0.947 8 C -0.021 4.021 9 N -0.913 5.913 10 Si 1.071 2.929 11 H -0.292 1.292 12 H -0.294 1.294 13 H -0.290 1.290 14 C 0.157 3.843 15 C -0.145 4.145 16 C 0.165 3.835 17 H 0.078 0.922 18 N -0.712 5.712 19 C 0.551 3.449 20 O -0.534 6.534 21 C -0.121 4.121 22 C -0.037 4.037 23 C -0.118 4.118 24 C -0.118 4.118 25 C -0.123 4.123 26 C -0.114 4.114 27 C -0.106 4.106 28 C -0.134 4.134 29 C -0.163 4.163 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.034 0.966 35 H 0.050 0.950 36 H 0.016 0.984 37 H 0.059 0.941 38 H 0.271 0.729 39 H 0.074 0.926 40 H 0.018 0.982 41 H 0.055 0.945 42 H 0.063 0.937 43 H 0.397 0.603 44 H 0.125 0.875 45 H 0.122 0.878 46 H 0.121 0.879 47 H 0.123 0.877 48 H 0.123 0.877 49 H 0.106 0.894 50 H 0.104 0.896 51 H 0.107 0.893 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.037 8.878 -16.315 24.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.091 4.091 3 C -0.187 4.187 4 C 0.035 3.965 5 N -0.317 5.317 6 C -0.483 4.483 7 H 0.071 0.929 8 C -0.224 4.224 9 N -0.552 5.552 10 Si 0.901 3.099 11 H -0.218 1.218 12 H -0.221 1.221 13 H -0.217 1.217 14 C 0.031 3.969 15 C -0.185 4.185 16 C 0.062 3.938 17 H 0.097 0.903 18 N -0.362 5.362 19 C 0.335 3.665 20 O -0.410 6.410 21 C -0.124 4.124 22 C -0.037 4.037 23 C -0.136 4.136 24 C -0.136 4.136 25 C -0.141 4.141 26 C -0.132 4.132 27 C -0.124 4.124 28 C -0.171 4.171 29 C -0.200 4.200 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.034 0.966 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.036 0.964 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.232 0.768 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.139 0.861 47 H 0.141 0.859 48 H 0.141 0.859 49 H 0.124 0.876 50 H 0.122 0.878 51 H 0.125 0.875 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -14.181 7.913 -15.724 22.605 hybrid contribution -1.822 0.544 -0.544 1.978 sum -16.003 8.457 -16.268 24.336 Atomic orbital electron populations 1.21797 0.95165 1.01385 1.01041 1.21340 0.94402 0.96783 0.96526 1.21776 1.03029 0.94317 0.99603 1.20920 0.85840 0.96160 0.93606 1.44060 0.99579 1.72452 1.15640 1.19893 1.04867 1.10905 1.12614 0.92933 1.25942 1.00873 0.95696 0.99874 1.70717 1.37416 1.06571 1.40448 0.83436 0.75806 0.74566 0.76064 1.21808 1.22083 1.21724 1.20781 0.98288 0.93759 0.84111 1.22433 0.94251 1.01828 0.99984 1.20968 0.94267 0.96355 0.82214 0.90346 1.46250 1.65439 1.14428 1.10116 1.19240 0.78226 0.85990 0.83032 1.90718 1.48924 1.17891 1.83454 1.20169 0.91692 1.05304 0.95270 1.18713 0.91045 0.95169 0.98787 1.21008 0.94396 0.97966 1.00203 1.21092 0.93898 0.98777 0.99843 1.21170 0.99901 0.94639 0.98416 1.21154 0.94125 0.98609 0.99332 1.21082 0.94246 0.98147 0.98883 1.23044 1.02102 0.98993 0.92987 1.23230 1.02079 0.91644 1.03022 0.92712 0.93281 0.93053 0.90668 0.94688 0.93083 0.96567 0.92239 0.91830 0.90790 0.96415 0.92656 0.91877 0.76844 0.85751 0.85977 0.86093 0.85899 0.85900 0.87568 0.87784 0.87509 0.87726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 8.31 37.16 0.31 -1.57 16 2 C -0.09 -1.44 0.56 -154.39 -0.09 -1.53 16 3 C -0.13 -2.04 7.83 37.16 0.29 -1.74 16 4 C 0.16 3.32 5.20 -3.71 -0.02 3.30 16 5 N -0.59 -14.41 2.22 -172.58 -0.38 -14.79 16 6 C -0.35 -9.61 9.43 -15.06 -0.14 -9.75 16 7 H 0.05 1.45 7.94 -52.49 -0.42 1.03 16 8 C -0.02 -0.58 4.65 -17.43 -0.08 -0.66 16 9 N -0.91 -27.36 12.74 55.49 0.71 -26.65 16 10 Si 1.07 25.19 29.99 -169.99 -5.10 20.10 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 14 C 0.16 3.69 4.72 -3.94 -0.02 3.67 16 15 C -0.14 -2.81 5.29 -26.83 -0.14 -2.95 16 16 C 0.17 2.83 1.53 -67.90 -0.10 2.72 16 17 H 0.08 1.53 7.66 -51.93 -0.40 1.13 16 18 N -0.71 -10.06 4.29 -53.77 -0.23 -10.29 16 19 C 0.55 8.18 5.81 -10.98 -0.06 8.11 16 20 O -0.53 -10.08 16.67 5.56 0.09 -9.99 16 21 C -0.12 -1.38 2.33 -156.81 -0.37 -1.74 16 22 C -0.04 -0.40 5.47 -104.63 -0.57 -0.97 16 23 C -0.12 -1.05 9.37 -39.58 -0.37 -1.42 16 24 C -0.12 -0.97 10.05 -39.58 -0.40 -1.36 16 25 C -0.12 -1.05 10.05 -39.59 -0.40 -1.45 16 26 C -0.11 -1.13 10.05 -39.58 -0.40 -1.52 16 27 C -0.11 -1.24 9.32 -39.58 -0.37 -1.61 16 28 C -0.13 -1.34 9.85 -26.73 -0.26 -1.60 16 29 C -0.16 -1.42 9.57 -26.73 -0.26 -1.67 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.62 7.36 -51.93 -0.38 0.23 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 1.39 5.97 -51.93 -0.31 1.08 16 34 H 0.03 0.45 6.59 -51.93 -0.34 0.11 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 38 H 0.27 8.23 6.77 -40.82 -0.28 7.95 16 39 H 0.07 1.94 6.72 -51.93 -0.35 1.59 16 40 H 0.02 0.44 7.84 -51.92 -0.41 0.03 16 41 H 0.05 1.09 8.08 -51.93 -0.42 0.67 16 42 H 0.06 1.21 6.34 -51.93 -0.33 0.88 16 43 H 0.40 4.84 6.67 -40.82 -0.27 4.57 16 44 H 0.12 0.86 5.94 -52.49 -0.31 0.55 16 45 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 46 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 47 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 48 H 0.12 1.64 7.38 -52.49 -0.39 1.25 16 49 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 50 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 51 H 0.11 0.70 6.09 -51.93 -0.32 0.38 16 52 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 403.03 15.07 6.07 6.07 Total: -1.00 -31.57 403.03 -10.64 -42.21 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -8.35 Total: 7.09 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -3.45 Total: -13.76 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: 0.09 Total: -51.73 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.10 Total: 20.10 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.57 -10.64 -42.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941199955.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.831 kcal (2) G-P(sol) polarization free energy of solvation -31.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds