Wall clock time and date at job start Wed Apr 1 2020 02:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.49532 * 2 1 4 4 C 1.53187 * 109.49784 * 120.06058 * 2 1 3 5 5 N 1.46930 * 108.77426 * 174.58684 * 4 2 1 6 6 C 1.36939 * 120.62751 * 126.37138 * 5 4 2 7 7 H 1.07993 * 120.00107 * 326.89145 * 6 5 4 8 8 C 1.38813 * 119.99931 * 146.88770 * 6 5 4 9 9 N 1.31621 * 119.99807 * 335.22891 * 8 6 5 10 10 Si 1.86798 * 120.00063 * 155.23265 * 8 6 5 11 11 H 1.48500 * 109.47220 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47308 * 119.99971 * 10 8 6 13 13 H 1.48497 * 109.46819 * 240.00070 * 10 8 6 14 14 C 1.46919 * 118.73970 * 306.64709 * 5 4 2 15 15 C 1.52763 * 109.01043 * 53.30788 * 14 5 4 16 16 C 1.53035 * 109.50079 * 239.90536 * 2 1 3 17 17 H 1.09000 * 109.45864 * 298.68783 * 16 2 1 18 18 N 1.46498 * 109.46261 * 58.65698 * 16 2 1 19 19 C 1.34783 * 120.00305 * 205.00002 * 18 16 2 20 20 O 1.21274 * 119.99698 * 354.96537 * 19 18 16 21 21 C 1.50704 * 119.99943 * 174.96278 * 19 18 16 22 22 C 1.50697 * 115.54754 * 279.19673 * 21 19 18 23 23 C 1.38231 * 119.99695 * 148.43784 * 22 21 19 24 24 C 1.38242 * 119.99891 * 179.76286 * 23 22 21 25 25 C 1.38227 * 119.99906 * 0.50812 * 24 23 22 26 26 C 1.38235 * 120.00007 * 359.74403 * 25 24 23 27 27 C 1.38236 * 120.00026 * 328.70826 * 22 21 19 28 28 C 1.53000 * 117.49492 * 133.48735 * 21 19 18 29 29 C 1.52998 * 117.49519 * 64.86794 * 21 19 18 30 30 H 1.09003 * 109.47402 * 299.93865 * 1 2 3 31 31 H 1.09004 * 109.47161 * 59.93923 * 1 2 3 32 32 H 1.09000 * 109.47212 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46949 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47351 * 300.06519 * 3 2 1 35 35 H 1.08999 * 109.47162 * 60.06315 * 3 2 1 36 36 H 1.09006 * 109.58273 * 54.80625 * 4 2 1 37 37 H 1.09000 * 109.58866 * 294.37928 * 4 2 1 38 38 H 0.96996 * 120.00426 * 357.91980 * 9 8 6 39 39 H 1.09000 * 109.58550 * 173.14359 * 14 5 4 40 40 H 1.09008 * 109.58857 * 293.56877 * 14 5 4 41 41 H 1.09000 * 109.56409 * 185.54969 * 15 14 5 42 42 H 1.08999 * 109.38209 * 65.51309 * 15 14 5 43 43 H 0.96996 * 120.00059 * 25.00795 * 18 16 2 44 44 H 1.07997 * 120.00352 * 359.97438 * 23 22 21 45 45 H 1.08005 * 119.99774 * 180.22972 * 24 23 22 46 46 H 1.08005 * 120.00339 * 179.72431 * 25 24 23 47 47 H 1.08010 * 119.99951 * 179.97438 * 26 25 24 48 48 H 1.07996 * 120.00084 * 0.02562 * 27 22 21 49 49 H 1.08997 * 117.50249 * 0.02562 * 28 21 19 50 50 H 1.08999 * 117.49311 * 145.02094 * 28 21 19 51 51 H 1.09001 * 117.49230 * 214.97822 * 29 21 19 52 52 H 1.08995 * 117.50450 * 359.97137 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0413 -0.7233 1.2498 5 7 3.5046 -0.8287 1.1698 6 6 4.2936 -0.3777 2.1942 7 1 3.9864 0.4791 2.7754 8 6 5.4882 -1.0218 2.4855 9 7 5.6506 -2.2865 2.1588 10 14 6.8651 -0.0940 3.3414 11 1 6.4348 1.3038 3.5986 12 1 7.1840 -0.7593 4.6301 13 1 8.0713 -0.0886 2.4752 14 6 4.1055 -1.4214 -0.0327 15 6 3.5708 -0.6953 -1.2658 16 6 2.0408 -0.7233 -1.2481 17 1 1.6970 -1.7576 -1.2347 18 7 1.5265 -0.0537 -2.4452 19 6 1.3985 -0.7393 -3.5986 20 8 1.7936 -1.8836 -3.6707 21 6 0.7644 -0.0839 -4.7984 22 6 -0.7423 -0.0599 -4.8053 23 6 -1.4141 0.9865 -5.4090 24 6 -2.7963 1.0061 -5.4196 25 6 -3.5066 -0.0154 -4.8174 26 6 -2.8348 -1.0592 -4.2091 27 6 -1.4526 -1.0815 -4.2030 28 6 1.4753 -0.2364 -6.1446 29 6 1.4929 1.1101 -5.4184 30 1 -0.3634 0.5129 0.8905 31 1 -0.3634 0.5148 -0.8895 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1306 1.4418 -0.0005 34 1 1.6765 1.9567 -0.8894 35 1 1.6784 1.9560 0.8905 36 1 1.6052 -1.7212 1.2985 37 1 1.7637 -0.1572 2.1389 38 1 4.9250 -2.7767 1.7418 39 1 5.1895 -1.3157 0.0104 40 1 3.8412 -2.4774 -0.0908 41 1 3.9335 -1.1902 -2.1667 42 1 3.9158 0.3386 -1.2547 43 1 1.2782 0.8832 -2.4079 44 1 -0.8592 1.7871 -5.8754 45 1 -3.3212 1.8218 -5.8946 46 1 -4.5865 0.0021 -4.8218 47 1 -3.3898 -1.8572 -3.7382 48 1 -0.9277 -1.8966 -3.7272 49 1 2.4013 -0.8111 -6.1626 50 1 0.8530 -0.3196 -7.0357 51 1 0.8823 1.9128 -5.8317 52 1 2.4305 1.4220 -4.9583 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941199955.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:17 Heat of formation + Delta-G solvation = 11.080993 kcal Electronic energy + Delta-G solvation = -31275.239804 eV Core-core repulsion = 27432.755495 eV Total energy + Delta-G solvation = -3842.484310 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.86539 -40.61216 -39.43527 -37.41786 -36.59846 -34.58928 -33.30378 -31.94144 -31.56229 -31.46743 -28.24581 -27.56638 -27.13503 -25.59418 -24.14191 -23.82122 -23.03588 -22.54206 -22.43040 -20.83622 -19.63296 -19.39484 -18.51482 -17.62150 -17.25788 -16.33998 -16.30287 -16.12266 -15.85033 -15.73918 -15.51995 -15.33979 -15.33379 -15.14327 -14.88330 -14.36517 -14.18111 -13.96779 -13.83413 -13.75518 -13.56619 -12.96177 -12.82555 -12.75014 -12.66073 -12.59612 -12.48140 -12.38512 -12.30543 -12.05404 -11.88470 -11.83471 -11.70869 -11.65185 -11.57539 -11.47852 -11.20212 -10.80239 -10.44278 -10.09249 -9.84970 -9.54817 -8.89544 -8.27691 -5.45832 0.35729 0.47202 1.49361 1.57745 1.65897 1.81646 2.02213 2.55891 2.63878 3.00252 3.21981 3.45360 3.45648 3.56115 3.64042 3.77930 3.85625 3.91125 3.93118 4.10266 4.14039 4.21073 4.27204 4.29697 4.44894 4.50238 4.51407 4.63805 4.67705 4.69679 4.71497 4.74663 4.80100 4.86844 4.91529 4.92375 4.99826 5.06386 5.07204 5.08951 5.09669 5.17173 5.17426 5.24046 5.30963 5.45434 5.56161 5.58417 5.61758 5.63553 5.89787 6.07858 6.37550 6.50472 7.04466 7.17984 7.75457 8.23887 8.98593 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019407 B = 0.002889 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.402733 B = 9688.084990 C =10196.960764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.076 4.076 3 C -0.124 4.124 4 C 0.158 3.842 5 N -0.607 5.607 6 C -0.350 4.350 7 H 0.053 0.947 8 C -0.076 4.076 9 N -0.944 5.944 10 Si 1.121 2.879 11 H -0.268 1.268 12 H -0.292 1.292 13 H -0.290 1.290 14 C 0.168 3.832 15 C -0.129 4.129 16 C 0.178 3.822 17 H 0.048 0.952 18 N -0.698 5.698 19 C 0.550 3.450 20 O -0.583 6.583 21 C -0.135 4.135 22 C -0.046 4.046 23 C -0.115 4.115 24 C -0.114 4.114 25 C -0.124 4.124 26 C -0.124 4.124 27 C -0.133 4.133 28 C -0.140 4.140 29 C -0.135 4.135 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.002 0.998 37 H 0.060 0.940 38 H 0.252 0.748 39 H 0.041 0.959 40 H -0.009 1.009 41 H 0.047 0.953 42 H 0.072 0.928 43 H 0.411 0.589 44 H 0.151 0.849 45 H 0.153 0.847 46 H 0.145 0.855 47 H 0.129 0.871 48 H 0.090 0.910 49 H 0.087 0.913 50 H 0.122 0.878 51 H 0.140 0.860 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.385 13.097 -18.023 28.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.078 4.078 3 C -0.181 4.181 4 C 0.032 3.968 5 N -0.330 5.330 6 C -0.480 4.480 7 H 0.071 0.929 8 C -0.272 4.272 9 N -0.585 5.585 10 Si 0.945 3.055 11 H -0.193 1.193 12 H -0.219 1.219 13 H -0.216 1.216 14 C 0.041 3.959 15 C -0.169 4.169 16 C 0.073 3.927 17 H 0.067 0.933 18 N -0.349 5.349 19 C 0.337 3.663 20 O -0.462 6.462 21 C -0.138 4.138 22 C -0.046 4.046 23 C -0.132 4.132 24 C -0.132 4.132 25 C -0.142 4.142 26 C -0.142 4.142 27 C -0.152 4.152 28 C -0.178 4.178 29 C -0.172 4.172 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.020 0.980 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.009 0.991 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.249 0.751 44 H 0.169 0.831 45 H 0.171 0.829 46 H 0.163 0.837 47 H 0.147 0.853 48 H 0.109 0.891 49 H 0.106 0.894 50 H 0.140 0.860 51 H 0.158 0.842 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.580 12.180 -17.447 26.975 hybrid contribution -1.181 -0.833 -0.032 1.445 sum -17.760 11.347 -17.479 27.381 Atomic orbital electron populations 1.21727 0.92486 1.01525 1.02813 1.21159 0.96331 0.96789 0.93538 1.21707 1.01111 0.93511 1.01763 1.21071 0.83644 0.96063 0.96036 1.44214 1.01105 1.72372 1.15350 1.20146 1.05091 1.10229 1.12540 0.92899 1.27350 1.03614 0.95631 1.00627 1.70858 1.36836 1.07889 1.42904 0.82783 0.73147 0.74542 0.74978 1.19252 1.21920 1.21647 1.20518 0.96445 0.92899 0.86010 1.22199 0.96083 1.01348 0.97237 1.20556 0.92448 0.95493 0.84187 0.93329 1.45977 1.64955 1.14910 1.09019 1.19929 0.77110 0.85374 0.83899 1.90696 1.50964 1.20247 1.84329 1.20028 0.92276 1.07572 0.93892 1.18715 0.90399 0.95808 0.99723 1.21273 0.94949 0.97578 0.99422 1.21504 0.93771 0.99124 0.98777 1.21496 1.01230 0.93992 0.97487 1.21305 0.93467 0.99633 0.99839 1.20992 0.95235 0.98259 1.00691 1.23123 1.01481 1.00123 0.93024 1.23403 1.01782 0.91310 1.00662 0.91156 0.91184 0.93872 0.93545 0.91137 0.92323 0.97982 0.92155 0.93815 0.94065 0.99126 0.93446 0.90917 0.75085 0.83101 0.82907 0.83732 0.85339 0.89134 0.89416 0.85975 0.84181 0.87703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 8.31 71.98 0.60 -2.69 16 2 C -0.08 -2.44 0.56 -52.11 -0.03 -2.47 16 3 C -0.12 -3.58 7.83 71.98 0.56 -3.02 16 4 C 0.16 6.62 5.20 86.36 0.45 7.07 16 5 N -0.61 -30.58 2.22 -699.92 -1.55 -32.13 16 6 C -0.35 -19.45 9.43 84.03 0.79 -18.66 16 7 H 0.05 2.91 7.94 -2.91 -0.02 2.89 16 8 C -0.08 -4.34 4.65 84.86 0.39 -3.95 16 9 N -0.94 -59.22 12.74 21.65 0.28 -58.94 16 10 Si 1.12 51.42 29.99 68.60 2.06 53.48 16 11 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 12 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 13 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 14 C 0.17 8.41 4.72 86.22 0.41 8.82 16 15 C -0.13 -5.19 5.29 30.53 0.16 -5.03 16 16 C 0.18 6.22 1.53 45.02 0.07 6.29 16 17 H 0.05 2.01 7.66 -2.39 -0.02 2.00 16 18 N -0.70 -19.18 4.29 -442.42 -1.90 -21.08 16 19 C 0.55 16.48 5.81 87.66 0.51 16.99 16 20 O -0.58 -23.31 16.67 -3.01 -0.05 -23.36 16 21 C -0.13 -2.86 2.33 -53.67 -0.12 -2.99 16 22 C -0.05 -0.91 5.47 -19.87 -0.11 -1.02 16 23 C -0.11 -1.56 9.37 22.27 0.21 -1.35 16 24 C -0.11 -1.35 10.05 22.27 0.22 -1.13 16 25 C -0.12 -1.72 10.05 22.27 0.22 -1.49 16 26 C -0.12 -2.31 10.05 22.27 0.22 -2.09 16 27 C -0.13 -3.12 9.32 22.27 0.21 -2.91 16 28 C -0.14 -2.57 9.85 30.59 0.30 -2.27 16 29 C -0.14 -1.88 9.57 30.59 0.29 -1.59 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.54 7.36 -2.38 -0.02 1.52 16 32 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.05 1.64 5.97 -2.38 -0.01 1.62 16 34 H 0.07 1.54 6.59 -2.39 -0.02 1.52 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.00 0.10 8.14 -2.38 -0.02 0.08 16 37 H 0.06 2.50 7.93 -2.39 -0.02 2.48 16 38 H 0.25 16.35 6.77 -92.71 -0.63 15.72 16 39 H 0.04 2.30 6.72 -2.39 -0.02 2.29 16 40 H -0.01 -0.50 7.84 -2.38 -0.02 -0.52 16 41 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 42 H 0.07 2.80 6.34 -2.39 -0.02 2.79 16 43 H 0.41 8.89 6.67 -92.71 -0.62 8.28 16 44 H 0.15 1.19 5.94 -2.91 -0.02 1.17 16 45 H 0.15 0.89 8.06 -2.91 -0.02 0.87 16 46 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 47 H 0.13 2.08 8.06 -2.91 -0.02 2.05 16 48 H 0.09 2.63 7.38 -2.91 -0.02 2.60 16 49 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 51 H 0.14 1.04 6.09 -2.39 -0.01 1.02 16 52 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -74.52 403.03 4.64 -69.88 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.44 Total: 25.65 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 5.36 Total: -13.50 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -3.17 Total: -112.15 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.05 Total: -23.36 kcal Atomic # 14 Polarization: 51.42 SS G_CDS: 2.06 Total: 53.48 kcal Total: -74.52 4.64 -69.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941199955.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.963 kcal (2) G-P(sol) polarization free energy of solvation -74.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds