Wall clock time and date at job start Wed Apr 1 2020 02:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.52590 * 2 1 4 4 C 1.53191 * 109.49597 * 239.91602 * 2 1 3 5 5 N 1.46920 * 108.77371 * 185.41286 * 4 2 1 6 6 C 1.36945 * 120.63142 * 233.58690 * 5 4 2 7 7 H 1.07994 * 119.99799 * 149.87104 * 6 5 4 8 8 C 1.38805 * 119.99696 * 329.87241 * 6 5 4 9 9 N 1.31615 * 120.00378 * 341.41811 * 8 6 5 10 10 Si 1.86802 * 119.99756 * 161.42078 * 8 6 5 11 11 H 1.48503 * 109.47216 * 59.99870 * 10 8 6 12 12 H 1.48500 * 109.47152 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.47239 * 299.99708 * 10 8 6 14 14 C 1.46927 * 118.74036 * 53.61193 * 5 4 2 15 15 C 1.53193 * 108.77423 * 306.39052 * 14 5 4 16 16 C 1.53034 * 109.31449 * 54.63287 * 15 14 5 17 17 H 1.09001 * 109.46200 * 58.64378 * 16 15 14 18 18 N 1.46500 * 109.46111 * 178.61356 * 16 15 14 19 19 C 1.34771 * 119.99950 * 274.99799 * 18 16 15 20 20 O 1.21280 * 120.00291 * 5.29350 * 19 18 16 21 21 C 1.50707 * 119.99837 * 185.29062 * 19 18 16 22 22 C 1.50694 * 115.54890 * 79.46896 * 21 19 18 23 23 C 1.38243 * 120.00194 * 53.26831 * 22 21 19 24 24 C 1.38233 * 120.00012 * 180.02562 * 23 22 21 25 25 C 1.38232 * 119.99998 * 359.95591 * 24 23 22 26 26 C 1.38242 * 120.00308 * 0.27954 * 25 24 23 27 27 C 1.38234 * 120.00097 * 233.24977 * 22 21 19 28 28 C 1.52996 * 117.49862 * 225.14052 * 21 19 18 29 29 C 1.53001 * 117.49884 * 293.79953 * 21 19 18 30 30 H 1.09007 * 109.47080 * 299.91740 * 1 2 3 31 31 H 1.08995 * 109.47418 * 59.91818 * 1 2 3 32 32 H 1.09001 * 109.47444 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47370 * 180.08239 * 3 2 1 34 34 H 1.08999 * 109.47033 * 300.08431 * 3 2 1 35 35 H 1.09005 * 109.47391 * 60.07686 * 3 2 1 36 36 H 1.09005 * 109.58545 * 65.62510 * 4 2 1 37 37 H 1.08998 * 109.58952 * 305.20033 * 4 2 1 38 38 H 0.97006 * 120.00050 * 180.02562 * 9 8 6 39 39 H 1.09001 * 109.59121 * 186.60108 * 14 5 4 40 40 H 1.09003 * 109.70588 * 66.24749 * 14 5 4 41 41 H 1.09004 * 109.49737 * 294.68341 * 15 14 5 42 42 H 1.09004 * 109.52496 * 174.60189 * 15 14 5 43 43 H 0.97002 * 119.99766 * 95.00481 * 18 16 15 44 44 H 1.07997 * 119.99794 * 359.97438 * 23 22 21 45 45 H 1.07994 * 119.99761 * 179.97438 * 24 23 22 46 46 H 1.08004 * 119.99790 * 180.02562 * 25 24 23 47 47 H 1.07998 * 119.99856 * 179.72396 * 26 25 24 48 48 H 1.08001 * 120.00318 * 0.02562 * 27 22 21 49 49 H 1.09005 * 117.49759 * 215.00274 * 28 21 19 50 50 H 1.09000 * 117.49950 * 0.02562 * 28 21 19 51 51 H 1.08995 * 117.50036 * 359.97438 * 29 21 19 52 52 H 1.08998 * 117.49556 * 144.97432 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0413 -0.7239 -1.2495 5 7 3.5045 -0.8292 -1.1695 6 6 4.2935 -0.3794 -2.1945 7 1 5.2844 -0.0029 -1.9879 8 6 3.8196 -0.4073 -3.4988 9 7 2.7989 -1.1771 -3.8118 10 14 4.6304 0.6476 -4.8100 11 1 6.0595 0.2650 -4.9392 12 1 3.9428 0.4377 -6.1094 13 1 4.5339 2.0783 -4.4238 14 6 4.1052 -1.4267 0.0308 15 6 3.5708 -0.6950 1.2660 16 6 2.0408 -0.7230 1.2484 17 1 1.6967 -1.7572 1.2352 18 7 1.5266 -0.0529 2.4454 19 6 1.3972 -0.7385 3.5984 20 8 1.7952 -1.8818 3.6721 21 6 0.7580 -0.0845 4.7963 22 6 -0.7482 -0.0366 4.7841 23 6 -1.4751 -1.1966 4.5918 24 6 -2.8567 -1.1525 4.5800 25 6 -3.5114 0.0514 4.7615 26 6 -2.7844 1.2122 4.9489 27 6 -1.4029 1.1673 4.9655 28 6 1.4482 -0.2618 6.1501 29 6 1.4971 1.0919 5.4372 30 1 -0.3633 0.5126 0.8908 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1313 1.4410 -0.0015 34 1 1.6773 1.9566 -0.8892 35 1 1.6797 1.9558 0.8907 36 1 1.7637 -0.1580 -2.1389 37 1 1.6052 -1.7217 -1.2980 38 1 2.4680 -1.1969 -4.7235 39 1 5.1896 -1.3247 -0.0137 40 1 3.8397 -2.4824 0.0881 41 1 3.9159 0.3389 1.2541 42 1 3.9334 -1.1892 2.1674 43 1 1.2791 0.8843 2.4079 44 1 -0.9637 -2.1371 4.4499 45 1 -3.4246 -2.0587 4.4294 46 1 -4.5908 0.0857 4.7527 47 1 -3.2959 2.1534 5.0862 48 1 -0.8350 2.0736 5.1156 49 1 0.8128 -0.3438 7.0321 50 1 2.3649 -0.8511 6.1744 51 1 2.4458 1.3925 4.9928 52 1 0.8938 1.9006 5.8497 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941199956.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:23 Heat of formation + Delta-G solvation = 30.590303 kcal Electronic energy + Delta-G solvation = -31275.989237 eV Core-core repulsion = 27434.350915 eV Total energy + Delta-G solvation = -3841.638322 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.64907 -39.33625 -38.14050 -36.38499 -34.54436 -32.77202 -31.95733 -31.12841 -30.78852 -29.44456 -26.76486 -26.00522 -25.62026 -24.28602 -23.22514 -22.68025 -22.01803 -21.38803 -20.56483 -19.61656 -18.27757 -17.51667 -16.86204 -16.43792 -15.71838 -15.50924 -15.00839 -14.86028 -14.84917 -14.35297 -14.13260 -13.89453 -13.62386 -13.47811 -13.36379 -13.18500 -12.98212 -12.84376 -12.61334 -12.28410 -11.89467 -11.62762 -11.54394 -11.48746 -11.37207 -11.31635 -11.07375 -10.87675 -10.80598 -10.73108 -10.64694 -10.57246 -10.20553 -10.10925 -9.96842 -9.75591 -9.64503 -9.38958 -9.10908 -8.81707 -8.63205 -8.44041 -6.63902 -5.79686 -3.22334 1.10371 1.21566 2.72453 3.21484 3.37724 3.40567 3.44076 3.45022 3.74401 4.28811 4.49551 4.57055 4.67005 4.72455 4.82586 4.90642 4.99296 5.18869 5.25013 5.28385 5.35174 5.41853 5.43255 5.49738 5.58112 5.59351 5.63185 5.80472 5.82863 5.87947 5.88676 5.96162 6.10662 6.11068 6.24166 6.26938 6.32356 6.33375 6.39794 6.42635 6.48354 6.51117 6.66896 6.72153 6.79033 6.84174 6.95092 7.00502 7.05120 7.30221 7.56965 7.76587 7.81794 8.42031 8.45911 9.20972 9.84200 10.43091 11.29031 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017664 B = 0.002981 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.782689 B = 9390.027807 C =10017.797182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.096 4.096 3 C -0.127 4.127 4 C 0.190 3.810 5 N -0.588 5.588 6 C -0.254 4.254 7 H 0.063 0.937 8 C 0.007 3.993 9 N -0.899 5.899 10 Si 0.898 3.102 11 H -0.283 1.283 12 H -0.291 1.291 13 H -0.284 1.284 14 C 0.147 3.853 15 C -0.142 4.142 16 C 0.165 3.835 17 H 0.079 0.921 18 N -0.711 5.711 19 C 0.551 3.449 20 O -0.536 6.536 21 C -0.121 4.121 22 C -0.041 4.041 23 C -0.103 4.103 24 C -0.117 4.117 25 C -0.121 4.121 26 C -0.120 4.120 27 C -0.113 4.113 28 C -0.135 4.135 29 C -0.162 4.162 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.029 0.971 36 H 0.086 0.914 37 H 0.020 0.980 38 H 0.254 0.746 39 H 0.055 0.945 40 H 0.019 0.981 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.396 0.604 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.122 0.878 48 H 0.124 0.876 49 H 0.103 0.897 50 H 0.105 0.895 51 H 0.103 0.897 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.277 6.411 19.347 22.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.099 4.099 3 C -0.184 4.184 4 C 0.063 3.937 5 N -0.310 5.310 6 C -0.384 4.384 7 H 0.081 0.919 8 C -0.192 4.192 9 N -0.542 5.542 10 Si 0.728 3.272 11 H -0.209 1.209 12 H -0.217 1.217 13 H -0.210 1.210 14 C 0.021 3.979 15 C -0.182 4.182 16 C 0.061 3.939 17 H 0.097 0.903 18 N -0.361 5.361 19 C 0.336 3.664 20 O -0.413 6.413 21 C -0.124 4.124 22 C -0.041 4.041 23 C -0.121 4.121 24 C -0.135 4.135 25 C -0.139 4.139 26 C -0.138 4.138 27 C -0.131 4.131 28 C -0.172 4.172 29 C -0.199 4.199 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.048 0.952 36 H 0.104 0.896 37 H 0.038 0.962 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.037 0.963 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.231 0.769 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.140 0.860 48 H 0.142 0.858 49 H 0.121 0.879 50 H 0.123 0.877 51 H 0.122 0.878 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.057 5.533 19.179 22.351 hybrid contribution 0.120 0.929 -0.817 1.243 sum -9.937 6.462 18.362 21.856 Atomic orbital electron populations 1.21758 0.95385 1.01293 1.00706 1.21554 0.94443 0.96793 0.97072 1.21741 1.02591 0.94687 0.99364 1.20739 0.83291 0.96605 0.93052 1.44010 1.01508 1.69235 1.16238 1.19070 0.99171 1.34802 0.85353 0.91888 1.25057 0.98738 0.98393 0.97029 1.70042 1.28079 1.37568 1.18555 0.86439 0.78934 0.80727 0.81078 1.20890 1.21690 1.21024 1.20872 0.96631 0.94250 0.86194 1.22441 0.94801 1.01530 0.99470 1.21007 0.93877 0.96578 0.82403 0.90339 1.46272 1.65278 1.14414 1.10135 1.19239 0.78213 0.85947 0.83023 1.90700 1.49193 1.17970 1.83436 1.20139 0.91702 1.05510 0.95026 1.18716 0.91083 0.93711 1.00597 1.21087 0.94029 0.98241 0.98726 1.21154 0.94271 0.98142 0.99900 1.21180 0.99896 0.92809 1.00057 1.21104 0.93869 0.98346 1.00446 1.21026 0.94476 0.97148 1.00458 1.23020 1.02181 0.98909 0.93094 1.23185 1.01922 0.91880 1.02957 0.93759 0.92658 0.93148 0.91070 0.92962 0.95177 0.89625 0.96213 0.93588 0.92619 0.96323 0.91894 0.92748 0.76857 0.85729 0.85915 0.86119 0.85983 0.85788 0.87900 0.87659 0.87826 0.87632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 8.31 37.16 0.31 -1.82 16 2 C -0.10 -1.72 0.56 -154.39 -0.09 -1.81 16 3 C -0.13 -2.13 7.83 37.16 0.29 -1.84 16 4 C 0.19 4.36 3.98 -3.71 -0.01 4.34 16 5 N -0.59 -14.31 2.42 -172.32 -0.42 -14.73 16 6 C -0.25 -6.81 9.55 -15.06 -0.14 -6.95 16 7 H 0.06 1.67 7.90 -52.49 -0.41 1.25 16 8 C 0.01 0.19 4.85 -17.44 -0.08 0.11 16 9 N -0.90 -25.71 11.46 55.49 0.64 -25.08 16 10 Si 0.90 21.36 29.59 -169.99 -5.03 16.33 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.15 3.16 6.52 -3.71 -0.02 3.13 16 15 C -0.14 -2.59 5.31 -26.61 -0.14 -2.73 16 16 C 0.16 2.87 1.53 -67.89 -0.10 2.77 16 17 H 0.08 1.57 7.66 -51.93 -0.40 1.17 16 18 N -0.71 -10.27 4.29 -53.77 -0.23 -10.50 16 19 C 0.55 8.23 6.64 -10.98 -0.07 8.15 16 20 O -0.54 -10.03 16.65 5.56 0.09 -9.93 16 21 C -0.12 -1.37 2.16 -156.81 -0.34 -1.71 16 22 C -0.04 -0.45 5.26 -104.62 -0.55 -1.00 16 23 C -0.10 -1.21 9.43 -39.58 -0.37 -1.58 16 24 C -0.12 -1.17 10.05 -39.59 -0.40 -1.57 16 25 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 26 C -0.12 -1.04 10.05 -39.58 -0.40 -1.43 16 27 C -0.11 -1.05 9.31 -39.58 -0.37 -1.42 16 28 C -0.13 -1.33 9.86 -26.70 -0.26 -1.59 16 29 C -0.16 -1.41 9.49 -26.69 -0.25 -1.67 16 30 H 0.04 0.63 7.36 -51.92 -0.38 0.24 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.34 5.97 -51.93 -0.31 1.03 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.03 0.41 6.58 -51.93 -0.34 0.07 16 36 H 0.09 2.20 6.28 -51.93 -0.33 1.87 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 1.12 6.34 -51.93 -0.33 0.79 16 42 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 43 H 0.40 5.02 6.67 -40.82 -0.27 4.74 16 44 H 0.12 1.60 8.04 -52.49 -0.42 1.17 16 45 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 46 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 47 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 48 H 0.12 0.92 6.37 -52.49 -0.33 0.58 16 49 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.11 1.13 8.14 -51.93 -0.42 0.70 16 51 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 52 H 0.11 0.71 6.52 -51.93 -0.34 0.37 16 LS Contribution 405.76 15.07 6.11 6.11 Total: -1.00 -30.55 405.76 -10.73 -41.28 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -8.49 Total: 6.62 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -3.41 Total: -10.11 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.01 Total: -50.31 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.55 -10.73 -41.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941199956.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.874 kcal (2) G-P(sol) polarization free energy of solvation -30.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds