Wall clock time and date at job start Wed Apr 1 2020 02:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38239 * 119.99972 * 2 1 4 4 C 1.38234 * 119.99741 * 179.97438 * 3 2 1 5 5 C 1.38232 * 120.00151 * 359.95296 * 4 3 2 6 6 C 1.50708 * 119.99973 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.46891 * 89.99717 * 6 5 4 8 8 O 1.21287 * 120.00390 * 359.72891 * 7 6 5 9 9 N 1.34773 * 120.00179 * 180.02562 * 7 6 5 10 10 C 1.43514 * 122.54334 * 359.43927 * 9 7 6 11 11 C 1.52195 * 113.96664 * 122.91264 * 10 9 7 12 12 C 1.51158 * 111.76891 * 82.86867 * 11 10 9 13 13 H 1.08999 * 110.23163 * 33.56885 * 12 11 10 14 14 C 1.53407 * 110.93307 * 156.63526 * 12 11 10 15 15 N 1.46617 * 108.10861 * 102.74046 * 14 12 11 16 16 C 1.36934 * 125.32163 * 178.63398 * 15 14 12 17 17 H 1.08005 * 120.00152 * 349.99860 * 16 15 14 18 18 C 1.38815 * 119.99985 * 169.98665 * 16 15 14 19 19 N 1.31619 * 119.99769 * 350.55145 * 18 16 15 20 20 Si 1.86799 * 120.00007 * 170.54085 * 18 16 15 21 21 H 1.48498 * 109.46871 * 94.63112 * 20 18 16 22 22 H 1.48498 * 109.47222 * 214.63495 * 20 18 16 23 23 H 1.48501 * 109.47149 * 334.63406 * 20 18 16 24 24 C 1.46657 * 109.35410 * 358.64061 * 15 14 12 25 25 C 1.54048 * 106.94301 * 18.29868 * 24 15 14 26 26 H 1.08999 * 111.47784 * 91.53711 * 25 24 15 27 27 C 1.51841 * 109.44869 * 214.13023 * 25 24 15 28 28 C 1.49552 * 122.54953 * 179.73183 * 9 7 6 29 29 C 1.38227 * 120.00130 * 0.27849 * 5 4 3 30 30 C 1.38234 * 120.00105 * 359.50943 * 29 5 4 31 31 H 1.08998 * 109.46895 * 90.00274 * 1 2 3 32 32 H 1.09002 * 109.47071 * 210.00447 * 1 2 3 33 33 H 1.08996 * 109.47310 * 330.00153 * 1 2 3 34 34 H 1.07996 * 119.99878 * 359.97155 * 3 2 1 35 35 H 1.08008 * 119.99599 * 179.97438 * 4 3 2 36 36 H 1.09006 * 109.47001 * 330.00364 * 6 5 4 37 37 H 1.08996 * 109.47513 * 210.00061 * 6 5 4 38 38 H 1.09004 * 108.52765 * 244.18847 * 10 9 7 39 39 H 1.08996 * 108.52236 * 1.71861 * 10 9 7 40 40 H 1.08994 * 109.13916 * 322.22572 * 11 10 9 41 41 H 1.09003 * 108.90903 * 203.35484 * 11 10 9 42 42 H 1.09001 * 109.74329 * 222.41654 * 14 12 11 43 43 H 1.09004 * 109.74028 * 343.08276 * 14 12 11 44 44 H 0.96995 * 119.99624 * 179.97438 * 19 18 16 45 45 H 1.09008 * 109.96562 * 258.92974 * 24 15 14 46 46 H 1.09001 * 109.97025 * 137.67728 * 24 15 14 47 47 H 1.09001 * 109.00645 * 54.29855 * 27 25 24 48 48 H 1.09002 * 109.01211 * 295.50923 * 27 25 24 49 49 H 1.09003 * 110.26747 * 9.13688 * 28 9 7 50 50 H 1.09003 * 110.27003 * 131.09568 * 28 9 7 51 51 H 1.08004 * 120.00052 * 179.73065 * 29 5 4 52 52 H 1.07997 * 120.00101 * 180.25390 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 0.0021 6 6 5.7787 0.0000 0.0032 7 6 6.2799 0.0012 1.4244 8 8 5.4911 0.0070 2.3457 9 7 7.6047 0.0020 1.6718 10 6 8.5857 -0.0102 0.6243 11 6 9.5615 1.1565 0.6775 12 6 10.6927 0.8976 1.6461 13 1 10.9439 -0.1630 1.6574 14 6 11.9220 1.7441 1.2920 15 7 11.9822 2.8730 2.2256 16 6 12.9563 3.8353 2.2425 17 1 13.8456 3.7142 1.6418 18 6 12.8007 4.9667 3.0317 19 7 11.6464 5.2074 3.6165 20 14 14.2295 6.1473 3.2639 21 1 14.1278 7.2484 2.2727 22 1 14.1874 6.7116 4.6368 23 1 15.5093 5.4204 3.0666 24 6 10.8362 2.8104 3.1385 25 6 10.2888 1.3719 3.0739 26 1 10.7457 0.7366 3.8326 27 6 8.7796 1.3974 3.2390 28 6 8.1643 0.0091 3.0587 29 6 3.5805 -1.1971 -0.0028 30 6 2.1982 -1.1971 0.0011 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5138 34 1 1.6582 2.1325 -0.0005 35 1 4.1205 2.1325 0.0001 36 1 6.1425 0.8896 -0.5110 37 1 6.1425 -0.8904 -0.5096 38 1 9.1496 -0.9408 0.6887 39 1 8.0684 0.0116 -0.3348 40 1 9.0277 2.0549 0.9873 41 1 9.9761 1.3159 -0.3179 42 1 12.8245 1.1401 1.3859 43 1 11.8319 2.1152 0.2711 44 1 11.5377 5.9977 4.1682 45 1 10.0681 3.5156 2.8206 46 1 11.1564 3.0416 4.1545 47 1 8.3528 2.0737 2.4984 48 1 8.5376 1.7662 4.2358 49 1 7.3693 -0.1491 3.7874 50 1 8.9286 -0.7613 3.1615 51 1 4.1206 -2.1324 -0.0060 52 1 1.6583 -2.1324 0.0015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946668079.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:03 Heat of formation + Delta-G solvation = -7.273694 kcal Electronic energy + Delta-G solvation = -30036.408006 eV Core-core repulsion = 26193.127777 eV Total energy + Delta-G solvation = -3843.280229 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 3.93 seconds Orbital eigenvalues (eV) -41.58459 -40.43654 -39.53448 -37.25025 -34.93823 -34.68309 -33.53551 -32.41597 -31.78589 -30.77503 -29.00273 -28.80009 -26.57321 -25.71012 -24.24966 -23.69228 -23.60194 -21.98453 -21.80054 -20.23668 -19.66135 -18.89350 -18.23649 -17.30944 -16.91765 -16.89575 -16.43643 -16.22060 -16.09102 -15.86296 -15.42866 -15.03641 -14.84078 -14.59780 -14.42204 -14.31072 -14.26975 -13.94232 -13.67224 -13.60597 -13.35473 -13.23079 -13.15906 -12.83637 -12.73641 -12.70906 -12.65718 -12.45253 -12.34388 -12.06764 -11.96636 -11.80150 -11.79521 -11.76994 -11.40619 -11.14677 -11.00960 -10.81004 -10.65402 -9.78447 -9.60384 -9.36549 -8.82832 -7.88402 -5.22900 0.41134 0.54443 1.43638 1.45243 1.54989 1.64869 2.05582 2.48707 2.88343 3.29882 3.65324 3.68814 3.73667 3.81380 3.90590 3.93926 4.01489 4.10301 4.13045 4.16456 4.22721 4.28726 4.29580 4.50110 4.57094 4.63137 4.64705 4.69341 4.70156 4.74287 4.78251 4.84711 4.87916 4.95788 5.00376 5.03054 5.08104 5.13424 5.14279 5.21937 5.26808 5.29444 5.31599 5.46506 5.52092 5.56587 5.62325 5.69982 5.73045 5.74003 5.80363 6.16242 6.21992 6.58169 7.10333 7.20575 7.81246 8.44561 9.22866 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021104 B = 0.002165 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.450887 B =12927.085129 C =13452.817995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.135 4.135 4 C -0.121 4.121 5 C -0.085 4.085 6 C -0.095 4.095 7 C 0.519 3.481 8 O -0.581 6.581 9 N -0.608 5.608 10 C 0.108 3.892 11 C -0.123 4.123 12 C -0.077 4.077 13 H 0.106 0.894 14 C 0.134 3.866 15 N -0.624 5.624 16 C -0.243 4.243 17 H 0.080 0.920 18 C -0.068 4.068 19 N -0.949 5.949 20 Si 0.976 3.024 21 H -0.286 1.286 22 H -0.295 1.295 23 H -0.267 1.267 24 C 0.195 3.805 25 C -0.096 4.096 26 H 0.076 0.924 27 C -0.113 4.113 28 C 0.123 3.877 29 C -0.113 4.113 30 C -0.131 4.131 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.131 0.869 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.134 0.866 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.045 0.955 41 H 0.087 0.913 42 H 0.027 0.973 43 H 0.023 0.977 44 H 0.246 0.754 45 H -0.008 1.008 46 H 0.008 0.992 47 H 0.056 0.944 48 H 0.051 0.949 49 H 0.076 0.924 50 H 0.102 0.898 51 H 0.135 0.865 52 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.926 -17.209 -11.177 26.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.152 4.152 4 C -0.139 4.139 5 C -0.086 4.086 6 C -0.134 4.134 7 C 0.309 3.691 8 O -0.461 6.461 9 N -0.341 5.341 10 C -0.015 4.015 11 C -0.161 4.161 12 C -0.096 4.096 13 H 0.124 0.876 14 C 0.009 3.991 15 N -0.350 5.350 16 C -0.372 4.372 17 H 0.098 0.902 18 C -0.261 4.261 19 N -0.598 5.598 20 Si 0.805 3.195 21 H -0.213 1.213 22 H -0.222 1.222 23 H -0.191 1.191 24 C 0.070 3.930 25 C -0.116 4.116 26 H 0.094 0.906 27 C -0.152 4.152 28 C 0.001 3.999 29 C -0.131 4.131 30 C -0.148 4.148 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.149 0.851 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.151 0.849 38 H 0.108 0.892 39 H 0.123 0.877 40 H 0.064 0.936 41 H 0.105 0.895 42 H 0.045 0.955 43 H 0.041 0.959 44 H 0.055 0.945 45 H 0.010 0.990 46 H 0.027 0.973 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.094 0.906 50 H 0.120 0.880 51 H 0.152 0.848 52 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -17.317 -17.036 -10.641 26.520 hybrid contribution 0.991 1.671 0.734 2.077 sum -16.326 -15.364 -9.907 24.510 Atomic orbital electron populations 1.20819 0.89524 1.03374 1.03099 1.20280 0.97502 0.93095 0.99144 1.21237 0.94090 0.98519 1.01401 1.21199 0.94956 0.97859 0.99936 1.19498 0.94485 0.93770 1.00832 1.20754 0.92387 1.07322 0.92969 1.20990 0.81093 0.74963 0.92078 1.90695 1.55676 1.51706 1.48037 1.48121 1.05213 1.72306 1.08430 1.21011 0.90654 0.98783 0.91072 1.21524 0.96004 0.98731 0.99885 1.21790 0.94110 0.99885 0.93812 0.87623 1.21399 0.96615 0.88509 0.92585 1.44521 1.27116 1.27678 1.35659 1.19423 0.97140 0.97403 1.23219 0.90176 1.25701 0.99491 0.99654 1.01301 1.70208 1.24017 1.28281 1.37296 0.85096 0.79144 0.78717 0.76586 1.21321 1.22201 1.19118 1.20759 0.87873 0.92024 0.92353 1.22244 0.94977 0.96535 0.97799 0.90552 1.21704 0.94418 0.97749 1.01326 1.22135 0.97941 0.96574 0.83261 1.21225 0.94768 0.97730 0.99347 1.21285 0.94204 0.98353 1.00994 0.90073 0.90738 0.91254 0.85072 0.86266 0.86459 0.84853 0.89200 0.87691 0.93632 0.89483 0.95522 0.95858 0.94536 0.98991 0.97341 0.92506 0.93040 0.90562 0.87973 0.84750 0.84251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 10.01 71.24 0.71 -0.68 16 2 C -0.10 -1.86 5.88 -19.86 -0.12 -1.98 16 3 C -0.13 -2.77 9.70 22.27 0.22 -2.55 16 4 C -0.12 -2.73 9.70 22.27 0.22 -2.52 16 5 C -0.09 -1.81 4.37 -19.87 -0.09 -1.90 16 6 C -0.10 -1.64 4.23 29.10 0.12 -1.52 16 7 C 0.52 12.97 7.75 87.66 0.68 13.65 16 8 O -0.58 -19.88 15.71 -3.05 -0.05 -19.93 16 9 N -0.61 -13.61 2.61 -822.83 -2.15 -15.76 16 10 C 0.11 1.82 5.70 86.67 0.49 2.31 16 11 C -0.12 -2.99 4.78 29.73 0.14 -2.85 16 12 C -0.08 -2.24 2.79 -10.30 -0.03 -2.27 16 13 H 0.11 2.34 7.67 -2.39 -0.02 2.32 16 14 C 0.13 5.18 6.82 86.49 0.59 5.77 16 15 N -0.62 -32.08 3.38 -698.45 -2.36 -34.44 16 16 C -0.24 -13.76 10.21 84.03 0.86 -12.90 16 17 H 0.08 4.33 7.85 -2.91 -0.02 4.31 16 18 C -0.07 -3.97 5.40 84.86 0.46 -3.51 16 19 N -0.95 -58.67 10.62 21.65 0.23 -58.44 16 20 Si 0.98 46.45 29.56 68.60 2.03 48.47 16 21 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 22 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 C 0.20 9.70 4.84 86.70 0.42 10.12 16 25 C -0.10 -3.35 2.94 -9.86 -0.03 -3.38 16 26 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 27 C -0.11 -3.58 4.50 30.19 0.14 -3.45 16 28 C 0.12 3.05 6.16 85.76 0.53 3.58 16 29 C -0.11 -2.19 9.70 22.27 0.22 -1.98 16 30 C -0.13 -2.38 9.70 22.27 0.22 -2.16 16 31 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.79 8.09 -2.39 -0.02 0.77 16 33 H 0.07 0.81 8.09 -2.39 -0.02 0.79 16 34 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 35 H 0.12 2.55 8.06 -2.91 -0.02 2.53 16 36 H 0.12 1.70 7.80 -2.38 -0.02 1.68 16 37 H 0.13 1.41 7.82 -2.39 -0.02 1.39 16 38 H 0.09 1.14 7.68 -2.39 -0.02 1.13 16 39 H 0.10 1.18 5.98 -2.39 -0.01 1.16 16 40 H 0.04 1.43 5.87 -2.39 -0.01 1.42 16 41 H 0.09 1.90 7.53 -2.39 -0.02 1.88 16 42 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.02 0.90 7.40 -2.39 -0.02 0.88 16 44 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 45 H -0.01 -0.45 7.37 -2.38 -0.02 -0.46 16 46 H 0.01 0.47 7.23 -2.39 -0.02 0.45 16 47 H 0.06 2.01 5.47 -2.39 -0.01 2.00 16 48 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 49 H 0.08 2.09 7.31 -2.39 -0.02 2.08 16 50 H 0.10 2.05 7.82 -2.39 -0.02 2.04 16 51 H 0.13 2.05 8.06 -2.91 -0.02 2.03 16 52 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 Total: -1.00 -77.55 398.47 4.35 -73.20 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.90 Total: 15.10 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: 5.75 Total: -8.21 kcal Atomic # 7 Polarization: -104.36 SS G_CDS: -4.27 Total: -108.64 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.05 Total: -19.93 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Total: -77.55 4.35 -73.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946668079.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.928 kcal (2) G-P(sol) polarization free energy of solvation -77.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.94 seconds