Wall clock time and date at job start Wed Apr 1 2020 02:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38254 * 119.99956 * 2 1 4 4 C 1.38214 * 119.99878 * 179.97438 * 3 2 1 5 5 C 1.38259 * 120.00445 * 0.02930 * 4 3 2 6 6 C 1.38218 * 119.99518 * 359.95175 * 5 4 3 7 7 C 1.50697 * 119.99771 * 180.02562 * 6 5 4 8 8 C 1.50695 * 109.47430 * 89.99428 * 7 6 5 9 9 O 1.21281 * 119.99948 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00055 * 179.97438 * 8 7 6 11 11 C 1.49719 * 122.75732 * 359.97438 * 10 8 7 12 12 C 1.53170 * 105.60350 * 111.63050 * 11 10 8 13 13 C 1.50955 * 111.95783 * 99.83103 * 12 11 10 14 14 H 1.09003 * 109.51977 * 58.24941 * 13 12 11 15 15 C 1.53582 * 111.31008 * 178.51196 * 13 12 11 16 16 N 1.46791 * 105.60335 * 150.43534 * 15 13 12 17 17 C 1.36944 * 126.06375 * 149.68518 * 16 15 13 18 18 H 1.07997 * 119.99933 * 349.91007 * 17 16 15 19 19 C 1.38805 * 119.99550 * 169.91036 * 17 16 15 20 20 N 1.31618 * 120.00489 * 350.57267 * 19 17 16 21 21 Si 1.86800 * 119.99606 * 170.58177 * 19 17 16 22 22 H 1.48503 * 109.47396 * 89.99542 * 21 19 17 23 23 H 1.48503 * 109.47001 * 209.99467 * 21 19 17 24 24 H 1.48503 * 109.47190 * 329.99387 * 21 19 17 25 25 C 1.46772 * 107.83382 * 329.62125 * 16 15 13 26 26 C 1.53832 * 107.91162 * 20.39977 * 25 16 15 27 27 H 1.09001 * 111.54927 * 118.11984 * 26 25 16 28 28 C 1.51858 * 109.22966 * 241.13343 * 26 25 16 29 29 C 1.43646 * 122.75584 * 180.02562 * 10 8 7 30 30 C 1.38220 * 119.99887 * 180.21086 * 2 1 3 31 31 H 1.08999 * 109.47013 * 90.00199 * 1 2 3 32 32 H 1.09007 * 109.46788 * 209.99985 * 1 2 3 33 33 H 1.08996 * 109.47281 * 329.99264 * 1 2 3 34 34 H 1.07997 * 120.00048 * 0.02562 * 3 2 1 35 35 H 1.08000 * 120.00065 * 179.97438 * 4 3 2 36 36 H 1.07994 * 119.99948 * 179.97438 * 5 4 3 37 37 H 1.09005 * 109.46938 * 329.99509 * 7 6 5 38 38 H 1.09004 * 109.46763 * 209.99863 * 7 6 5 39 39 H 1.09001 * 110.21946 * 230.64864 * 11 10 8 40 40 H 1.08996 * 110.21568 * 352.47511 * 11 10 8 41 41 H 1.08994 * 108.98887 * 220.47429 * 12 11 10 42 42 H 1.09001 * 108.97954 * 339.19739 * 12 11 10 43 43 H 1.09000 * 110.21623 * 269.34586 * 15 13 12 44 44 H 1.09002 * 110.21186 * 31.25070 * 15 13 12 45 45 H 0.96999 * 119.99894 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.77832 * 260.78429 * 25 16 15 47 47 H 1.09004 * 109.79932 * 140.01968 * 25 16 15 48 48 H 1.09002 * 108.91903 * 79.20660 * 28 26 25 49 49 H 1.08997 * 108.91524 * 320.56094 * 28 26 25 50 50 H 1.09000 * 108.42466 * 116.57392 * 29 10 8 51 51 H 1.08998 * 108.42625 * 359.30916 * 29 10 8 52 52 H 1.07996 * 120.00117 * 0.04164 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2718 0.0000 0.0005 6 6 3.5807 -1.1970 0.0009 7 6 4.3342 -2.5021 0.0014 8 6 4.5854 -2.9366 1.4223 9 8 4.1910 -2.2539 2.3439 10 7 5.2475 -4.0842 1.6689 11 6 5.7598 -4.9742 0.5793 12 6 7.2867 -4.8767 0.6514 13 6 7.8940 -6.0546 1.3740 14 1 7.6105 -6.9778 0.8685 15 6 9.4266 -5.9603 1.4055 16 7 9.8391 -6.6440 2.6373 17 6 11.0162 -7.3167 2.8305 18 1 11.6664 -7.5190 1.9922 19 6 11.3735 -7.7385 4.1037 20 7 10.6819 -7.3359 5.1487 21 14 12.8360 -8.8775 4.3341 22 1 14.0672 -8.0696 4.5259 23 1 12.6142 -9.7328 5.5276 24 1 12.9894 -9.7356 3.1318 25 6 8.7663 -6.4769 3.6249 26 6 7.4738 -6.1316 2.8656 27 1 6.7054 -6.8895 3.0179 28 6 6.9833 -4.7645 3.3090 29 6 5.5188 -4.5546 2.9988 30 6 2.1981 -1.1970 -0.0044 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8901 0.5139 33 1 -0.3633 0.8899 0.5139 34 1 1.6583 2.1326 0.0004 35 1 4.1204 2.1326 0.0001 36 1 5.3517 0.0001 0.0005 37 1 5.2866 -2.3719 -0.5126 38 1 3.7450 -3.2619 -0.5122 39 1 5.4396 -6.0020 0.7507 40 1 5.4034 -4.6261 -0.3901 41 1 7.6876 -4.8369 -0.3614 42 1 7.5590 -3.9605 1.1752 43 1 9.8528 -6.4627 0.5371 44 1 9.7393 -4.9164 1.4284 45 1 10.9319 -7.6304 6.0384 46 1 9.0188 -5.6678 4.3104 47 1 8.6301 -7.4036 4.1825 48 1 7.5662 -3.9974 2.7991 49 1 7.1344 -4.6664 4.3839 50 1 4.9968 -5.5006 3.1428 51 1 5.1163 -3.8320 3.7086 52 1 1.6581 -2.1323 -0.0085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946751913.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:10 Heat of formation + Delta-G solvation = 10.585074 kcal Electronic energy + Delta-G solvation = -29969.604463 eV Core-core repulsion = 26127.098649 eV Total energy + Delta-G solvation = -3842.505814 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.55325 -39.51353 -38.38610 -35.85900 -33.78510 -33.09059 -32.48685 -31.99104 -30.74903 -28.64341 -27.37494 -27.20651 -26.80193 -24.32011 -22.99078 -22.73284 -22.19812 -20.94360 -20.27552 -19.21391 -18.26729 -17.35383 -16.85349 -16.71008 -16.01382 -15.90258 -15.22516 -15.01404 -14.75073 -14.59945 -14.07593 -14.04054 -13.64190 -13.53573 -13.41586 -13.23807 -13.12089 -12.80855 -12.68319 -12.51174 -12.32611 -12.07676 -12.05942 -11.74946 -11.51733 -11.29916 -11.24035 -11.15976 -11.02110 -10.82905 -10.76779 -10.67129 -10.10190 -9.98939 -9.79027 -9.73795 -9.60703 -9.54512 -8.93773 -8.74299 -8.62921 -8.53603 -6.81097 -5.74823 -3.07063 1.16612 1.24806 2.60722 2.97560 3.38957 3.44503 3.46423 3.61056 4.41191 4.48403 4.51822 4.57509 4.70345 4.83842 4.92811 5.00001 5.03695 5.09124 5.10362 5.26245 5.27474 5.30568 5.33732 5.36050 5.40456 5.48453 5.52348 5.57082 5.58657 5.66921 5.81748 5.87456 5.94476 5.97185 6.01363 6.07702 6.18933 6.27980 6.29949 6.32239 6.38635 6.43743 6.44431 6.59425 6.67386 6.71879 6.84280 6.85751 7.02037 7.43849 7.52802 7.63435 7.79592 8.18680 8.27577 9.20597 9.82528 10.51524 11.38514 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.031550 B = 0.002008 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.267770 B =13943.134719 C =14045.475263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.123 4.123 4 C -0.115 4.115 5 C -0.110 4.110 6 C -0.059 4.059 7 C -0.101 4.101 8 C 0.522 3.478 9 O -0.536 6.536 10 N -0.609 5.609 11 C 0.108 3.892 12 C -0.130 4.130 13 C -0.098 4.098 14 H 0.063 0.937 15 C 0.140 3.860 16 N -0.599 5.599 17 C -0.230 4.230 18 H 0.076 0.924 19 C -0.007 4.007 20 N -0.917 5.917 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.178 3.822 26 C -0.104 4.104 27 H 0.067 0.933 28 C -0.125 4.125 29 C 0.109 3.891 30 C -0.106 4.106 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.039 0.961 44 H 0.013 0.987 45 H 0.253 0.747 46 H 0.031 0.969 47 H 0.057 0.943 48 H 0.069 0.931 49 H 0.073 0.927 50 H 0.058 0.942 51 H 0.079 0.921 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.781 11.943 -13.725 26.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.141 4.141 4 C -0.133 4.133 5 C -0.128 4.128 6 C -0.060 4.060 7 C -0.140 4.140 8 C 0.310 3.690 9 O -0.413 6.413 10 N -0.342 5.342 11 C -0.014 4.014 12 C -0.168 4.168 13 C -0.117 4.117 14 H 0.082 0.918 15 C 0.014 3.986 16 N -0.323 5.323 17 C -0.359 4.359 18 H 0.094 0.906 19 C -0.204 4.204 20 N -0.564 5.564 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.052 3.948 26 C -0.123 4.123 27 H 0.085 0.915 28 C -0.163 4.163 29 C -0.014 4.014 30 C -0.124 4.124 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.057 0.943 44 H 0.030 0.970 45 H 0.063 0.937 46 H 0.049 0.951 47 H 0.075 0.925 48 H 0.088 0.912 49 H 0.092 0.908 50 H 0.076 0.924 51 H 0.097 0.903 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.881 12.227 -13.028 25.995 hybrid contribution 1.006 -0.708 0.270 1.260 sum -17.875 11.519 -12.758 24.799 Atomic orbital electron populations 1.20779 0.91294 1.02802 1.02126 1.19856 0.95972 0.93121 0.99844 1.20999 0.94295 0.97378 1.01449 1.21078 0.94288 0.97883 1.00066 1.20981 0.99776 0.91996 1.00054 1.19278 0.93488 0.93670 0.99540 1.20683 1.02217 0.96033 0.95115 1.20325 0.77580 0.79948 0.91146 1.90721 1.50966 1.53210 1.46361 1.48079 1.55924 1.22017 1.08212 1.22478 0.94406 0.94707 0.89804 1.21743 0.93817 1.00356 1.00904 1.21768 0.97344 0.96954 0.95684 0.91839 1.21195 0.91288 0.95227 0.90927 1.44259 1.17294 1.61284 1.09495 1.19011 0.95882 1.27888 0.93082 0.90632 1.24832 0.99064 1.01171 0.95333 1.69967 1.41554 1.47178 0.97670 0.86163 0.82069 0.80508 0.77269 1.21582 1.21613 1.20672 1.21074 0.83116 1.00273 0.90312 1.22229 0.99580 0.95472 0.95055 0.91458 1.21550 0.94318 0.98486 1.01976 1.20544 0.97208 0.99824 0.83863 1.20832 0.93343 0.97567 1.00652 0.91292 0.91572 0.91612 0.86316 0.86095 0.86226 0.87839 0.88076 0.90013 0.90025 0.91551 0.90530 0.94310 0.96987 0.93719 0.95104 0.92503 0.91237 0.90814 0.92352 0.90253 0.86379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.01 0.36 -0.43 16 2 C -0.09 -0.85 5.88 -104.62 -0.62 -1.46 16 3 C -0.12 -1.16 9.70 -39.58 -0.38 -1.54 16 4 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 5 C -0.11 -1.17 9.70 -39.58 -0.38 -1.56 16 6 C -0.06 -0.64 4.37 -104.62 -0.46 -1.10 16 7 C -0.10 -0.94 4.30 -29.04 -0.12 -1.06 16 8 C 0.52 6.78 7.75 -10.99 -0.09 6.69 16 9 O -0.54 -9.15 15.55 5.56 0.09 -9.06 16 10 N -0.61 -7.44 2.67 -174.25 -0.47 -7.91 16 11 C 0.11 1.06 6.16 -2.16 -0.01 1.05 16 12 C -0.13 -1.57 4.57 -27.67 -0.13 -1.69 16 13 C -0.10 -1.55 2.60 -90.20 -0.23 -1.78 16 14 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 15 C 0.14 2.82 6.70 -3.58 -0.02 2.79 16 16 N -0.60 -15.11 3.36 -171.91 -0.58 -15.69 16 17 C -0.23 -6.40 10.26 -15.06 -0.15 -6.55 16 18 H 0.08 2.03 7.85 -52.49 -0.41 1.62 16 19 C -0.01 -0.20 5.41 -17.43 -0.09 -0.30 16 20 N -0.92 -26.97 10.71 55.49 0.59 -26.38 16 21 Si 0.91 22.02 29.56 -169.99 -5.03 17.00 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.18 4.19 4.98 -3.46 -0.02 4.18 16 26 C -0.10 -1.81 3.13 -89.63 -0.28 -2.09 16 27 H 0.07 1.11 7.76 -51.93 -0.40 0.71 16 28 C -0.13 -1.97 4.53 -28.24 -0.13 -2.10 16 29 C 0.11 1.51 5.70 -6.48 -0.04 1.47 16 30 C -0.11 -1.10 9.36 -39.58 -0.37 -1.47 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 33 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 34 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 36 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.10 0.79 8.01 -51.93 -0.42 0.37 16 38 H 0.10 0.71 7.75 -51.93 -0.40 0.30 16 39 H 0.08 0.79 7.85 -51.93 -0.41 0.38 16 40 H 0.08 0.57 6.43 -51.93 -0.33 0.23 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 1.05 5.58 -51.93 -0.29 0.76 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.01 0.25 7.96 -51.93 -0.41 -0.16 16 45 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.03 0.81 7.15 -51.93 -0.37 0.44 16 47 H 0.06 1.51 7.13 -51.93 -0.37 1.14 16 48 H 0.07 1.16 5.78 -51.93 -0.30 0.86 16 49 H 0.07 1.23 7.66 -51.93 -0.40 0.83 16 50 H 0.06 0.76 7.70 -51.93 -0.40 0.36 16 51 H 0.08 1.20 7.00 -51.93 -0.36 0.84 16 52 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 399.20 15.07 6.02 6.02 Total: -1.00 -33.41 399.20 -11.58 -44.98 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -8.64 Total: -0.49 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -3.57 Total: -8.47 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -0.45 Total: -49.98 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.41 -11.58 -44.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946751913.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.569 kcal (2) G-P(sol) polarization free energy of solvation -33.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds