Wall clock time and date at job start Wed Apr 1 2020 02:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38254 * 119.99956 * 2 1 4 4 C 1.38214 * 119.99878 * 179.97438 * 3 2 1 5 5 C 1.38259 * 120.00445 * 0.02930 * 4 3 2 6 6 C 1.38218 * 119.99518 * 359.95175 * 5 4 3 7 7 C 1.50697 * 119.99771 * 180.02562 * 6 5 4 8 8 C 1.50695 * 109.47430 * 89.99428 * 7 6 5 9 9 O 1.21281 * 119.99948 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00055 * 179.97438 * 8 7 6 11 11 C 1.49719 * 122.75732 * 359.97438 * 10 8 7 12 12 C 1.53170 * 105.60350 * 111.63050 * 11 10 8 13 13 C 1.50955 * 111.95783 * 99.83103 * 12 11 10 14 14 H 1.09003 * 109.51977 * 58.24941 * 13 12 11 15 15 C 1.53582 * 111.31008 * 178.51196 * 13 12 11 16 16 N 1.46791 * 105.60335 * 150.43534 * 15 13 12 17 17 C 1.36944 * 126.06375 * 149.68518 * 16 15 13 18 18 H 1.07997 * 119.99933 * 349.91007 * 17 16 15 19 19 C 1.38805 * 119.99550 * 169.91036 * 17 16 15 20 20 N 1.31618 * 120.00489 * 350.57267 * 19 17 16 21 21 Si 1.86800 * 119.99606 * 170.58177 * 19 17 16 22 22 H 1.48503 * 109.47396 * 89.99542 * 21 19 17 23 23 H 1.48503 * 109.47001 * 209.99467 * 21 19 17 24 24 H 1.48503 * 109.47190 * 329.99387 * 21 19 17 25 25 C 1.46772 * 107.83382 * 329.62125 * 16 15 13 26 26 C 1.53832 * 107.91162 * 20.39977 * 25 16 15 27 27 H 1.09001 * 111.54927 * 118.11984 * 26 25 16 28 28 C 1.51858 * 109.22966 * 241.13343 * 26 25 16 29 29 C 1.43646 * 122.75584 * 180.02562 * 10 8 7 30 30 C 1.38220 * 119.99887 * 180.21086 * 2 1 3 31 31 H 1.08999 * 109.47013 * 90.00199 * 1 2 3 32 32 H 1.09007 * 109.46788 * 209.99985 * 1 2 3 33 33 H 1.08996 * 109.47281 * 329.99264 * 1 2 3 34 34 H 1.07997 * 120.00048 * 0.02562 * 3 2 1 35 35 H 1.08000 * 120.00065 * 179.97438 * 4 3 2 36 36 H 1.07994 * 119.99948 * 179.97438 * 5 4 3 37 37 H 1.09005 * 109.46938 * 329.99509 * 7 6 5 38 38 H 1.09004 * 109.46763 * 209.99863 * 7 6 5 39 39 H 1.09001 * 110.21946 * 230.64864 * 11 10 8 40 40 H 1.08996 * 110.21568 * 352.47511 * 11 10 8 41 41 H 1.08994 * 108.98887 * 220.47429 * 12 11 10 42 42 H 1.09001 * 108.97954 * 339.19739 * 12 11 10 43 43 H 1.09000 * 110.21623 * 269.34586 * 15 13 12 44 44 H 1.09002 * 110.21186 * 31.25070 * 15 13 12 45 45 H 0.96999 * 119.99894 * 180.02562 * 20 19 17 46 46 H 1.09002 * 109.77832 * 260.78429 * 25 16 15 47 47 H 1.09004 * 109.79932 * 140.01968 * 25 16 15 48 48 H 1.09002 * 108.91903 * 79.20660 * 28 26 25 49 49 H 1.08997 * 108.91524 * 320.56094 * 28 26 25 50 50 H 1.09000 * 108.42466 * 116.57392 * 29 10 8 51 51 H 1.08998 * 108.42625 * 359.30916 * 29 10 8 52 52 H 1.07996 * 120.00117 * 0.04164 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2718 0.0000 0.0005 6 6 3.5807 -1.1970 0.0009 7 6 4.3342 -2.5021 0.0014 8 6 4.5854 -2.9366 1.4223 9 8 4.1910 -2.2539 2.3439 10 7 5.2475 -4.0842 1.6689 11 6 5.7598 -4.9742 0.5793 12 6 7.2867 -4.8767 0.6514 13 6 7.8940 -6.0546 1.3740 14 1 7.6105 -6.9778 0.8685 15 6 9.4266 -5.9603 1.4055 16 7 9.8391 -6.6440 2.6373 17 6 11.0162 -7.3167 2.8305 18 1 11.6664 -7.5190 1.9922 19 6 11.3735 -7.7385 4.1037 20 7 10.6819 -7.3359 5.1487 21 14 12.8360 -8.8775 4.3341 22 1 14.0672 -8.0696 4.5259 23 1 12.6142 -9.7328 5.5276 24 1 12.9894 -9.7356 3.1318 25 6 8.7663 -6.4769 3.6249 26 6 7.4738 -6.1316 2.8656 27 1 6.7054 -6.8895 3.0179 28 6 6.9833 -4.7645 3.3090 29 6 5.5188 -4.5546 2.9988 30 6 2.1981 -1.1970 -0.0044 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8901 0.5139 33 1 -0.3633 0.8899 0.5139 34 1 1.6583 2.1326 0.0004 35 1 4.1204 2.1326 0.0001 36 1 5.3517 0.0001 0.0005 37 1 5.2866 -2.3719 -0.5126 38 1 3.7450 -3.2619 -0.5122 39 1 5.4396 -6.0020 0.7507 40 1 5.4034 -4.6261 -0.3901 41 1 7.6876 -4.8369 -0.3614 42 1 7.5590 -3.9605 1.1752 43 1 9.8528 -6.4627 0.5371 44 1 9.7393 -4.9164 1.4284 45 1 10.9319 -7.6304 6.0384 46 1 9.0188 -5.6678 4.3104 47 1 8.6301 -7.4036 4.1825 48 1 7.5662 -3.9974 2.7991 49 1 7.1344 -4.6664 4.3839 50 1 4.9968 -5.5006 3.1428 51 1 5.1163 -3.8320 3.7086 52 1 1.6581 -2.1323 -0.0085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946751913.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:09 Heat of formation + Delta-G solvation = -7.065516 kcal Electronic energy + Delta-G solvation = -29970.369850 eV Core-core repulsion = 26127.098649 eV Total energy + Delta-G solvation = -3843.271201 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.58530 -40.44017 -39.54707 -37.22985 -34.83313 -34.50419 -33.52437 -32.82125 -32.48068 -29.77432 -28.77374 -28.31269 -27.61310 -26.01279 -24.20958 -23.85221 -22.95331 -22.13266 -21.70710 -20.13651 -19.67976 -18.87151 -18.21665 -17.44023 -16.98895 -16.87026 -16.67176 -16.26981 -16.08734 -15.59879 -15.44667 -15.08029 -14.81162 -14.52738 -14.45332 -14.29124 -14.08413 -13.92513 -13.88135 -13.62025 -13.23784 -13.23213 -13.11448 -12.95455 -12.75387 -12.73757 -12.68352 -12.37727 -12.29137 -12.03844 -11.90915 -11.83650 -11.81799 -11.74333 -11.29651 -11.22618 -10.96520 -10.83114 -10.66780 -9.65492 -9.62691 -9.44434 -8.87710 -7.88964 -5.23373 0.44697 0.53624 1.44483 1.46192 1.55585 1.65599 2.06094 2.48960 2.88480 3.29764 3.58950 3.69965 3.76398 3.80925 3.91487 3.94175 4.01709 4.07836 4.10195 4.25430 4.27487 4.29464 4.41211 4.50327 4.54976 4.63637 4.66442 4.69904 4.70560 4.73585 4.80335 4.84064 4.85779 4.93683 4.99069 5.01706 5.02288 5.14926 5.18929 5.22999 5.28775 5.32734 5.33461 5.47164 5.58537 5.58954 5.62856 5.69184 5.73613 5.77285 5.78484 6.17535 6.21372 6.50820 7.08833 7.22292 7.78572 8.45751 9.23369 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.031550 B = 0.002008 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.267770 B =13943.134719 C =14045.475263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.134 4.134 4 C -0.127 4.127 5 C -0.131 4.131 6 C -0.075 4.075 7 C -0.093 4.093 8 C 0.519 3.481 9 O -0.585 6.585 10 N -0.608 5.608 11 C 0.111 3.889 12 C -0.123 4.123 13 C -0.082 4.082 14 H 0.079 0.921 15 C 0.133 3.867 16 N -0.623 5.623 17 C -0.243 4.243 18 H 0.082 0.918 19 C -0.068 4.068 20 N -0.950 5.950 21 Si 0.978 3.022 22 H -0.287 1.287 23 H -0.294 1.294 24 H -0.266 1.266 25 C 0.187 3.813 26 C -0.091 4.091 27 H 0.083 0.917 28 C -0.111 4.111 29 C 0.120 3.880 30 C -0.122 4.122 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.133 0.867 39 H 0.093 0.907 40 H 0.124 0.876 41 H 0.095 0.905 42 H 0.059 0.941 43 H 0.048 0.952 44 H 0.007 0.993 45 H 0.247 0.753 46 H -0.009 1.009 47 H 0.017 0.983 48 H 0.060 0.940 49 H 0.053 0.947 50 H 0.072 0.928 51 H 0.061 0.939 52 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.203 11.683 -16.938 28.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.152 4.152 4 C -0.145 4.145 5 C -0.149 4.149 6 C -0.075 4.075 7 C -0.132 4.132 8 C 0.310 3.690 9 O -0.465 6.465 10 N -0.340 5.340 11 C -0.009 4.009 12 C -0.162 4.162 13 C -0.101 4.101 14 H 0.097 0.903 15 C 0.008 3.992 16 N -0.348 5.348 17 C -0.372 4.372 18 H 0.100 0.900 19 C -0.262 4.262 20 N -0.599 5.599 21 Si 0.806 3.194 22 H -0.214 1.214 23 H -0.221 1.221 24 H -0.191 1.191 25 C 0.061 3.939 26 C -0.111 4.111 27 H 0.101 0.899 28 C -0.150 4.150 29 C -0.005 4.005 30 C -0.140 4.140 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.151 0.849 39 H 0.112 0.888 40 H 0.142 0.858 41 H 0.114 0.886 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.025 0.975 45 H 0.056 0.944 46 H 0.009 0.991 47 H 0.035 0.965 48 H 0.078 0.922 49 H 0.071 0.929 50 H 0.091 0.909 51 H 0.080 0.920 52 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.303 11.964 -16.305 28.657 hybrid contribution 1.494 -0.567 1.277 2.045 sum -18.809 11.397 -15.028 26.637 Atomic orbital electron populations 1.20815 0.89623 1.03252 1.03131 1.20239 0.97422 0.93097 0.99196 1.21308 0.94425 0.98285 1.01187 1.21371 0.94820 0.98442 0.99824 1.21217 1.00269 0.92593 1.00818 1.19525 0.93933 0.94348 0.99699 1.20742 1.03721 0.96095 0.92628 1.21019 0.76523 0.79240 0.92244 1.90703 1.52988 1.54621 1.48199 1.48168 1.55538 1.22277 1.08020 1.22690 0.92298 0.95141 0.90813 1.21683 0.95611 0.97327 1.01534 1.21692 0.94139 0.99702 0.94583 0.90257 1.21447 0.94465 0.94273 0.89062 1.44616 1.17062 1.61590 1.11510 1.19443 0.96850 1.27550 0.93330 0.90010 1.25716 1.02171 1.03080 0.95190 1.70190 1.43351 1.48584 0.97746 0.85097 0.78604 0.78457 0.77271 1.21355 1.22094 1.19083 1.20855 0.85868 0.96851 0.90334 1.22062 0.96632 0.96591 0.95791 0.89852 1.21367 0.95866 0.97182 1.00586 1.20273 0.95166 1.00032 0.85029 1.21100 0.93565 0.98374 1.00948 0.89922 0.91415 0.90886 0.84515 0.84630 0.85801 0.85609 0.84944 0.88839 0.85762 0.88643 0.92257 0.93362 0.97506 0.94439 0.99122 0.96451 0.92182 0.92863 0.90947 0.92041 0.85310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 10.01 71.24 0.71 -0.64 16 2 C -0.10 -1.78 5.88 -19.86 -0.12 -1.89 16 3 C -0.13 -2.36 9.70 22.27 0.22 -2.14 16 4 C -0.13 -2.36 10.05 22.27 0.22 -2.13 16 5 C -0.13 -2.65 9.70 22.27 0.22 -2.44 16 6 C -0.07 -1.47 4.37 -19.86 -0.09 -1.56 16 7 C -0.09 -1.41 4.30 29.10 0.13 -1.29 16 8 C 0.52 12.40 7.75 87.66 0.68 13.08 16 9 O -0.59 -19.77 15.55 -3.03 -0.05 -19.82 16 10 N -0.61 -13.23 2.67 -823.59 -2.20 -15.42 16 11 C 0.11 1.65 6.16 85.81 0.53 2.18 16 12 C -0.12 -2.52 4.57 29.99 0.14 -2.38 16 13 C -0.08 -2.39 2.60 -10.52 -0.03 -2.42 16 14 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 15 C 0.13 5.22 6.70 86.52 0.58 5.80 16 16 N -0.62 -32.12 3.36 -697.82 -2.34 -34.46 16 17 C -0.24 -13.72 10.26 84.03 0.86 -12.85 16 18 H 0.08 4.39 7.85 -2.91 -0.02 4.37 16 19 C -0.07 -3.95 5.41 84.86 0.46 -3.50 16 20 N -0.95 -58.50 10.71 21.65 0.23 -58.27 16 21 Si 0.98 46.15 29.56 68.60 2.03 48.17 16 22 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 23 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 25 C 0.19 9.22 4.98 86.61 0.43 9.65 16 26 C -0.09 -3.16 3.13 -10.15 -0.03 -3.19 16 27 H 0.08 2.65 7.76 -2.39 -0.02 2.63 16 28 C -0.11 -3.55 4.53 29.62 0.13 -3.42 16 29 C 0.12 3.18 5.70 86.31 0.49 3.67 16 30 C -0.12 -2.32 9.36 22.27 0.21 -2.12 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.79 8.09 -2.38 -0.02 0.77 16 33 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 34 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 36 H 0.12 2.25 8.06 -2.91 -0.02 2.23 16 37 H 0.13 1.36 8.01 -2.38 -0.02 1.35 16 38 H 0.13 1.18 7.75 -2.39 -0.02 1.16 16 39 H 0.09 1.28 7.85 -2.39 -0.02 1.26 16 40 H 0.12 0.89 6.43 -2.39 -0.02 0.88 16 41 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.06 1.48 5.58 -2.39 -0.01 1.46 16 43 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 44 H 0.01 0.29 7.96 -2.39 -0.02 0.27 16 45 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 46 H -0.01 -0.52 7.15 -2.39 -0.02 -0.54 16 47 H 0.02 0.96 7.13 -2.38 -0.02 0.95 16 48 H 0.06 2.02 5.78 -2.39 -0.01 2.01 16 49 H 0.05 1.89 7.66 -2.39 -0.02 1.87 16 50 H 0.07 1.74 7.70 -2.39 -0.02 1.72 16 51 H 0.06 1.89 7.00 -2.39 -0.02 1.87 16 52 H 0.13 2.04 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -77.87 399.20 4.31 -73.56 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.89 Total: 13.82 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: 5.74 Total: -7.59 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -4.31 Total: -108.15 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.05 Total: -19.82 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.17 kcal Total: -77.87 4.31 -73.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946751913.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.496 kcal (2) G-P(sol) polarization free energy of solvation -77.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds