Wall clock time and date at job start Wed Apr 1 2020 02:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 119.99894 * 2 1 4 4 C 1.38214 * 120.00314 * 180.02562 * 3 2 1 5 5 C 1.38258 * 119.99650 * 359.96087 * 4 3 2 6 6 C 1.38210 * 120.00059 * 359.97438 * 5 4 3 7 7 C 1.38214 * 120.00468 * 180.17921 * 2 1 3 8 8 C 1.50705 * 119.99851 * 0.03387 * 7 2 1 9 9 C 1.50704 * 109.46897 * 85.19342 * 8 7 2 10 10 O 1.21284 * 119.99597 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99902 * 179.97438 * 9 8 7 12 12 C 1.49722 * 122.75521 * 179.97438 * 11 9 8 13 13 C 1.53174 * 105.59590 * 111.59064 * 12 11 9 14 14 C 1.50960 * 111.95826 * 99.83576 * 13 12 11 15 15 H 1.09004 * 109.52349 * 58.24398 * 14 13 12 16 16 C 1.53587 * 111.30955 * 178.50558 * 14 13 12 17 17 N 1.47171 * 105.65263 * 150.28808 * 16 14 13 18 18 C 1.36933 * 126.09849 * 149.72461 * 17 16 14 19 19 H 1.08005 * 120.00128 * 350.00863 * 18 17 16 20 20 C 1.38814 * 120.00151 * 170.01363 * 18 17 16 21 21 N 1.31618 * 119.99860 * 350.57951 * 20 18 17 22 22 Si 1.86799 * 119.99890 * 170.58124 * 20 18 17 23 23 H 1.48493 * 109.47424 * 359.97438 * 22 20 18 24 24 H 1.48507 * 109.46934 * 119.99902 * 22 20 18 25 25 H 1.48500 * 109.46857 * 239.99578 * 22 20 18 26 26 C 1.46778 * 107.80230 * 329.74275 * 17 16 14 27 27 C 1.53836 * 107.90720 * 20.29188 * 26 17 16 28 28 H 1.09000 * 111.54554 * 118.12066 * 27 26 17 29 29 C 1.51859 * 109.23324 * 241.13063 * 27 26 17 30 30 C 1.43636 * 122.75965 * 359.71051 * 11 9 8 31 31 H 1.08998 * 109.47651 * 90.00010 * 1 2 3 32 32 H 1.09005 * 109.46677 * 209.99616 * 1 2 3 33 33 H 1.08996 * 109.47277 * 329.99031 * 1 2 3 34 34 H 1.08001 * 120.00031 * 0.02562 * 3 2 1 35 35 H 1.08000 * 120.00474 * 179.97438 * 4 3 2 36 36 H 1.08000 * 119.99616 * 179.97438 * 5 4 3 37 37 H 1.07999 * 119.99618 * 179.97438 * 6 5 4 38 38 H 1.08994 * 109.47294 * 205.19473 * 8 7 2 39 39 H 1.09001 * 109.46972 * 325.19552 * 8 7 2 40 40 H 1.09004 * 110.21977 * 230.60874 * 12 11 9 41 41 H 1.09002 * 110.21856 * 352.43592 * 12 11 9 42 42 H 1.09004 * 108.98074 * 220.46731 * 13 12 11 43 43 H 1.08995 * 108.98174 * 339.19572 * 13 12 11 44 44 H 1.08997 * 110.21246 * 269.33759 * 16 14 13 45 45 H 1.09009 * 110.20411 * 31.24347 * 16 14 13 46 46 H 0.96998 * 120.00294 * 180.02562 * 21 20 18 47 47 H 1.09005 * 109.77807 * 260.68406 * 26 17 16 48 48 H 1.08994 * 109.80195 * 139.91581 * 26 17 16 49 49 H 1.08999 * 108.91489 * 320.65642 * 29 27 26 50 50 H 1.08999 * 108.91545 * 79.30200 * 29 27 26 51 51 H 1.09005 * 108.42309 * 359.35880 * 30 11 9 52 52 H 1.08996 * 108.42921 * 116.61524 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0003 6 6 3.5807 -1.1968 0.0011 7 6 2.1982 -1.1969 -0.0037 8 6 1.4447 -2.5021 -0.0086 9 6 1.0912 -2.8727 -1.4259 10 8 1.4184 -2.1481 -2.3418 11 7 0.4115 -4.0094 -1.6756 12 6 0.0280 -4.4368 -3.0584 13 6 0.8706 -5.6814 -3.3532 14 6 0.0847 -6.9551 -3.1554 15 1 -0.7924 -6.9461 -3.8025 16 6 0.9320 -8.1915 -3.4904 17 7 0.4167 -9.2704 -2.6322 18 6 0.4108 -10.6065 -2.9319 19 1 0.6582 -10.9372 -3.9299 20 6 0.0866 -11.5359 -1.9532 21 7 -0.0333 -11.1560 -0.6987 22 14 -0.1794 -13.3259 -2.4165 23 1 0.0120 -13.4923 -3.8796 24 1 0.7975 -14.1758 -1.6892 25 1 -1.5594 -13.7325 -2.0488 26 6 -0.0902 -8.6587 -1.3980 27 6 -0.3592 -7.1711 -1.6832 28 1 -1.4122 -6.9223 -1.5519 29 6 0.5161 -6.3220 -0.7782 30 6 0.0002 -4.9130 -0.6377 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3633 0.8899 0.5140 34 1 1.6582 2.1327 0.0004 35 1 4.1204 2.1327 -0.0010 36 1 5.3517 0.0002 -0.0011 37 1 4.1207 -2.1321 0.0009 38 1 2.0681 -3.2831 0.4265 39 1 0.5320 -2.3969 0.5779 40 1 -1.0332 -4.6828 -3.0960 41 1 0.2563 -3.6467 -3.7738 42 1 1.2198 -5.6370 -4.3849 43 1 1.7341 -5.6907 -2.6882 44 1 0.8127 -8.4564 -4.5409 45 1 1.9816 -8.0007 -3.2662 46 1 -0.2594 -11.8055 -0.0147 47 1 0.6534 -8.7540 -0.6067 48 1 -1.0153 -9.1493 -1.0957 49 1 0.5570 -6.7838 0.2083 50 1 1.5234 -6.2861 -1.1932 51 1 0.3412 -4.5170 0.3189 52 1 -1.0891 -4.9478 -0.6228 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946884821.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:13 Heat of formation + Delta-G solvation = -2.322289 kcal Electronic energy + Delta-G solvation = -30356.413654 eV Core-core repulsion = 26513.348135 eV Total energy + Delta-G solvation = -3843.065519 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.62640 -40.51447 -39.46646 -37.25203 -34.93843 -34.29091 -33.46955 -33.02449 -32.50295 -29.59971 -29.06486 -28.35134 -27.42028 -25.97760 -24.17522 -23.88021 -22.90598 -22.13585 -21.81410 -20.16721 -19.67238 -18.85906 -18.22961 -17.40856 -17.05006 -16.82203 -16.64284 -16.31477 -16.09933 -15.71028 -15.41211 -15.02425 -14.93297 -14.50769 -14.45725 -14.24173 -13.96091 -13.94905 -13.77903 -13.72302 -13.31848 -13.21367 -13.11928 -12.96721 -12.87511 -12.76804 -12.69239 -12.37766 -12.23906 -12.08044 -11.82988 -11.81227 -11.75426 -11.74407 -11.32891 -11.16756 -10.97289 -10.83626 -10.64614 -9.66066 -9.61403 -9.44127 -8.86916 -7.88630 -5.22282 0.45056 0.53363 1.45332 1.45823 1.56524 1.65013 2.04264 2.48986 2.90186 3.29913 3.63646 3.66850 3.74612 3.84253 3.90834 3.94236 4.01441 4.08364 4.11936 4.16537 4.19675 4.31975 4.32656 4.47002 4.53868 4.56854 4.65135 4.69947 4.73911 4.75853 4.82267 4.84597 4.85991 4.91147 4.94758 5.01069 5.03475 5.09989 5.18472 5.20112 5.27449 5.33579 5.34196 5.45954 5.54256 5.58574 5.61124 5.65180 5.76215 5.78646 5.81482 6.17573 6.22266 6.57268 7.10597 7.20054 7.78258 8.45846 9.23665 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.026484 B = 0.002167 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.975027 B =12917.242640 C =13047.085677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.086 4.086 3 C -0.133 4.133 4 C -0.126 4.126 5 C -0.138 4.138 6 C -0.122 4.122 7 C -0.082 4.082 8 C -0.102 4.102 9 C 0.525 3.475 10 O -0.575 6.575 11 N -0.608 5.608 12 C 0.119 3.881 13 C -0.115 4.115 14 C -0.082 4.082 15 H 0.071 0.929 16 C 0.133 3.867 17 N -0.624 5.624 18 C -0.244 4.244 19 H 0.077 0.923 20 C -0.064 4.064 21 N -0.946 5.946 22 Si 0.975 3.025 23 H -0.268 1.268 24 H -0.292 1.292 25 H -0.290 1.290 26 C 0.187 3.813 27 C -0.091 4.091 28 H 0.086 0.914 29 C -0.120 4.120 30 C 0.110 3.890 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.125 0.875 38 H 0.117 0.883 39 H 0.128 0.872 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.041 0.959 45 H 0.008 0.992 46 H 0.248 0.752 47 H -0.001 1.001 48 H 0.019 0.981 49 H 0.074 0.926 50 H 0.058 0.942 51 H 0.101 0.899 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.015 24.702 4.047 25.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.151 4.151 4 C -0.143 4.143 5 C -0.155 4.155 6 C -0.140 4.140 7 C -0.083 4.083 8 C -0.141 4.141 9 C 0.315 3.685 10 O -0.455 6.455 11 N -0.340 5.340 12 C -0.002 4.002 13 C -0.153 4.153 14 C -0.101 4.101 15 H 0.089 0.911 16 C 0.008 3.992 17 N -0.349 5.349 18 C -0.373 4.373 19 H 0.094 0.906 20 C -0.257 4.257 21 N -0.594 5.594 22 Si 0.804 3.196 23 H -0.192 1.192 24 H -0.219 1.219 25 H -0.217 1.217 26 C 0.062 3.938 27 C -0.111 4.111 28 H 0.104 0.896 29 C -0.159 4.159 30 C -0.014 4.014 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.143 0.857 38 H 0.135 0.865 39 H 0.146 0.854 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.059 0.941 45 H 0.026 0.974 46 H 0.057 0.943 47 H 0.017 0.983 48 H 0.037 0.963 49 H 0.092 0.908 50 H 0.077 0.923 51 H 0.119 0.881 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.164 24.904 3.662 25.198 hybrid contribution 0.185 -1.718 -0.214 1.742 sum 1.349 23.185 3.448 23.479 Atomic orbital electron populations 1.20866 0.90340 1.03867 1.02128 1.20008 0.96966 0.92811 0.98786 1.21292 0.94749 0.97910 1.01138 1.21431 0.94525 0.98778 0.99607 1.21363 1.00801 0.92492 1.00886 1.21236 0.93813 0.98997 0.99990 1.19360 0.93755 0.93869 1.01277 1.20791 1.03309 0.96340 0.93616 1.20788 0.76337 0.79685 0.91693 1.90688 1.54690 1.52110 1.47982 1.48159 1.55552 1.21213 1.09093 1.22238 0.99573 0.95361 0.83059 1.21574 0.98761 0.92784 1.02203 1.21666 0.98369 0.93528 0.96578 0.91084 1.21466 0.95114 0.88473 0.94177 1.44702 1.70131 1.02002 1.18063 1.19430 1.40402 0.82071 0.95377 0.90555 1.25643 1.02808 1.02061 0.95196 1.70161 1.55153 1.34016 1.00079 0.85059 0.76969 0.79790 0.77800 1.19197 1.21936 1.21656 1.20895 0.95861 0.89550 0.87509 1.22111 0.99640 0.94660 0.94657 0.89590 1.21376 0.99624 0.94743 1.00115 1.20606 1.00806 0.88844 0.91137 0.92164 0.90496 0.89983 0.84469 0.84141 0.84597 0.85730 0.86493 0.85421 0.88889 0.89950 0.91023 0.91807 0.94102 0.97387 0.94291 0.98262 0.96278 0.90752 0.92343 0.88084 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 9.60 71.24 0.68 -1.09 16 2 C -0.09 -1.68 5.88 -19.87 -0.12 -1.80 16 3 C -0.13 -2.39 9.70 22.27 0.22 -2.17 16 4 C -0.13 -2.16 10.05 22.27 0.22 -1.94 16 5 C -0.14 -2.55 10.05 22.27 0.22 -2.33 16 6 C -0.12 -2.53 9.68 22.27 0.22 -2.32 16 7 C -0.08 -1.70 4.37 -19.87 -0.09 -1.79 16 8 C -0.10 -1.77 3.74 29.10 0.11 -1.66 16 9 C 0.53 12.42 7.76 87.66 0.68 13.10 16 10 O -0.58 -18.24 15.73 -3.04 -0.05 -18.29 16 11 N -0.61 -13.08 2.67 -824.42 -2.20 -15.29 16 12 C 0.12 2.68 6.26 85.81 0.54 3.22 16 13 C -0.11 -2.98 4.57 29.99 0.14 -2.84 16 14 C -0.08 -2.58 2.61 -10.48 -0.03 -2.60 16 15 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 16 C 0.13 5.46 6.71 86.45 0.58 6.04 16 17 N -0.62 -32.10 3.37 -696.82 -2.35 -34.45 16 18 C -0.24 -13.78 10.26 84.03 0.86 -12.92 16 19 H 0.08 4.18 7.85 -2.91 -0.02 4.16 16 20 C -0.06 -3.62 5.41 84.86 0.46 -3.16 16 21 N -0.95 -56.49 10.71 21.65 0.23 -56.26 16 22 Si 0.98 45.74 29.56 68.60 2.03 47.77 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 25 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 26 C 0.19 8.85 4.99 86.61 0.43 9.29 16 27 C -0.09 -2.99 3.14 -10.11 -0.03 -3.02 16 28 H 0.09 2.54 7.76 -2.39 -0.02 2.52 16 29 C -0.12 -3.16 4.51 29.48 0.13 -3.03 16 30 C 0.11 2.05 5.61 86.17 0.48 2.54 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 0.98 6.03 -2.38 -0.01 0.96 16 33 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 34 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 36 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 37 H 0.12 2.31 8.06 -2.91 -0.02 2.29 16 38 H 0.12 1.69 7.76 -2.39 -0.02 1.67 16 39 H 0.13 1.58 5.91 -2.39 -0.01 1.56 16 40 H 0.09 1.84 7.85 -2.38 -0.02 1.82 16 41 H 0.08 1.99 7.32 -2.39 -0.02 1.97 16 42 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 43 H 0.06 1.82 5.58 -2.39 -0.01 1.81 16 44 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.01 0.35 7.96 -2.38 -0.02 0.33 16 46 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 47 H 0.00 -0.03 7.15 -2.38 -0.02 -0.05 16 48 H 0.02 1.02 7.13 -2.39 -0.02 1.00 16 49 H 0.07 2.01 7.66 -2.39 -0.02 2.00 16 50 H 0.06 1.71 5.78 -2.39 -0.01 1.69 16 51 H 0.10 1.37 6.01 -2.38 -0.01 1.35 16 52 H 0.08 1.32 7.70 -2.39 -0.02 1.30 16 Total: -1.00 -73.36 394.88 4.28 -69.09 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.90 Total: 15.91 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: 5.71 Total: -8.48 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -4.32 Total: -105.99 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.05 Total: -18.29 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -73.36 4.28 -69.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946884821.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.766 kcal (2) G-P(sol) polarization free energy of solvation -73.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds