Wall clock time and date at job start Wed Apr 1 2020 02:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50706 * 109.47403 * 2 1 4 4 C 1.38234 * 119.99634 * 90.00022 * 3 2 1 5 5 C 1.38238 * 120.00082 * 179.97438 * 4 3 2 6 6 C 1.38234 * 119.99748 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.99965 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47175 * 304.12824 * 7 6 5 9 9 C 1.52998 * 109.46813 * 184.13138 * 7 6 5 10 10 C 1.50699 * 109.46965 * 64.13342 * 7 6 5 11 11 O 1.21278 * 120.00145 * 5.72846 * 10 7 6 12 12 N 1.34783 * 119.99648 * 185.72536 * 10 7 6 13 13 C 1.46497 * 119.99647 * 179.97438 * 12 10 7 14 14 H 1.08995 * 115.51891 * 350.58323 * 13 12 10 15 15 C 1.53005 * 117.44137 * 205.16855 * 13 12 10 16 16 H 1.09005 * 119.53534 * 5.71764 * 15 13 12 17 17 C 1.54388 * 118.12301 * 160.80921 * 15 13 12 18 18 N 1.48147 * 104.61587 * 87.19287 * 17 15 13 19 19 C 1.36933 * 127.83726 * 140.41350 * 18 17 15 20 20 H 1.08002 * 120.00461 * 344.02730 * 19 18 17 21 21 C 1.38822 * 119.99892 * 164.02413 * 19 18 17 22 22 N 1.31616 * 119.99900 * 352.63842 * 21 19 18 23 23 Si 1.86797 * 119.99763 * 172.63743 * 21 19 18 24 24 H 1.48495 * 109.46987 * 94.94807 * 23 21 19 25 25 H 1.48501 * 109.46966 * 214.94655 * 23 21 19 26 26 H 1.48501 * 109.47436 * 334.94239 * 23 21 19 27 27 C 1.48150 * 104.32132 * 320.41425 * 18 17 15 28 28 C 1.53001 * 117.44125 * 136.00254 * 13 12 10 29 29 H 1.09000 * 119.54017 * 355.87702 * 28 13 12 30 30 C 1.38236 * 119.99839 * 0.27624 * 6 5 4 31 31 C 1.38227 * 120.00186 * 269.98244 * 3 2 1 32 32 H 1.09005 * 109.47191 * 59.99387 * 1 2 3 33 33 H 1.08999 * 109.47316 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.47324 * 299.99877 * 1 2 3 35 35 H 1.09006 * 109.47324 * 240.00123 * 2 1 3 36 36 H 1.09003 * 109.47403 * 120.00120 * 2 1 3 37 37 H 1.08001 * 120.00075 * 359.97438 * 4 3 2 38 38 H 1.07996 * 120.00266 * 180.02562 * 5 4 3 39 39 H 1.08995 * 109.47360 * 300.00541 * 8 7 6 40 40 H 1.09000 * 109.46970 * 179.97438 * 8 7 6 41 41 H 1.09002 * 109.46809 * 60.00202 * 8 7 6 42 42 H 1.09001 * 109.47143 * 179.97438 * 9 7 6 43 43 H 1.08999 * 109.47470 * 299.99850 * 9 7 6 44 44 H 1.08999 * 109.47777 * 60.00313 * 9 7 6 45 45 H 0.96998 * 120.00188 * 359.97438 * 12 10 7 46 46 H 1.08998 * 110.40790 * 205.97489 * 17 15 13 47 47 H 1.08996 * 110.40722 * 328.41008 * 17 15 13 48 48 H 0.96998 * 119.99713 * 179.97438 * 22 21 19 49 49 H 1.09004 * 110.40411 * 158.37551 * 27 18 17 50 50 H 1.09004 * 110.40581 * 280.67779 * 27 18 17 51 51 H 1.08002 * 119.99910 * 179.72613 * 30 6 5 52 52 H 1.07998 * 120.00169 * 359.97438 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7241 3.3755 1.1973 6 6 2.9556 4.0268 0.0002 7 6 3.4591 5.4472 0.0002 8 6 2.5036 6.3270 0.8090 9 6 3.5321 5.9624 -1.4385 10 6 4.8316 5.4936 0.6207 11 8 5.3932 4.4636 0.9281 12 7 5.4350 6.6798 0.8339 13 6 6.7691 6.7248 1.4376 14 1 7.1387 5.7780 1.8310 15 6 7.1618 8.0006 2.1854 16 1 6.4223 8.7883 2.3294 17 6 8.3310 7.9240 3.1908 18 7 9.5429 8.1668 2.3739 19 6 10.6479 8.9029 2.7088 20 1 10.6064 9.5923 3.5392 21 6 11.8217 8.7631 1.9809 22 7 11.9200 7.8232 1.0648 23 14 13.2617 9.9090 2.3016 24 1 14.1975 9.2710 3.2620 25 1 13.9711 10.1814 1.0258 26 1 12.7611 11.1855 2.8719 27 6 9.2879 7.4326 1.1127 28 6 7.7923 7.6778 0.8163 29 1 7.5303 8.2360 -0.0825 30 6 2.7202 3.3770 -1.1970 31 6 2.2631 2.0724 -1.1971 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 2.0823 1.5634 2.1325 38 1 2.9045 3.8844 2.1326 39 1 1.5109 6.2934 0.3603 40 1 2.8681 7.3542 0.8094 41 1 2.4516 5.9599 1.8341 42 1 3.8958 6.9899 -1.4385 43 1 4.2127 5.3357 -2.0148 44 1 2.5394 5.9289 -1.8874 45 1 4.9860 7.5035 0.5876 46 1 8.2267 8.6948 3.9544 47 1 8.3736 6.9363 3.6497 48 1 12.7400 7.7257 0.5560 49 1 9.9057 7.8326 0.3086 50 1 9.4821 6.3684 1.2466 51 1 2.8968 3.8873 -2.1323 52 1 2.0838 1.5631 -2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962248586.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:09 Heat of formation + Delta-G solvation = 35.276540 kcal Electronic energy + Delta-G solvation = -29460.840914 eV Core-core repulsion = 25619.405802 eV Total energy + Delta-G solvation = -3841.435112 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.75740 -39.30208 -38.29274 -35.89857 -34.51870 -33.46981 -32.38076 -31.18537 -30.20386 -28.80160 -27.70500 -27.14108 -25.74297 -24.62461 -23.46325 -22.46461 -21.73596 -20.84458 -20.39812 -19.35518 -19.22987 -17.26821 -16.81714 -16.58583 -16.07102 -15.68883 -15.11778 -14.78549 -14.65474 -14.40734 -14.31632 -13.90439 -13.65217 -13.56198 -13.52025 -13.24681 -12.84494 -12.72622 -12.69695 -12.46676 -12.35915 -12.20244 -11.98347 -11.79368 -11.56835 -11.53871 -11.42311 -11.30788 -10.99172 -10.89010 -10.84109 -10.80292 -10.38478 -10.17147 -10.16777 -9.74245 -9.61973 -9.18145 -8.95752 -8.74200 -8.61659 -8.29704 -6.86071 -5.79110 -3.14372 1.21608 1.35997 2.67207 3.11553 3.38191 3.43414 3.45606 3.71112 4.24813 4.30681 4.46807 4.49782 4.58442 4.65053 4.73229 4.81741 4.92147 5.03211 5.09352 5.16780 5.25508 5.26008 5.32214 5.37100 5.40106 5.40983 5.45056 5.50407 5.51108 5.59353 5.62373 5.69125 5.78041 5.83981 5.85186 5.88554 5.89857 5.96507 5.98998 6.16980 6.26749 6.34299 6.51414 6.52212 6.52689 6.68634 6.83654 6.88979 6.92092 7.37247 7.55048 7.61081 7.72337 8.21345 8.32563 9.11135 9.73719 10.50921 11.34910 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.024080 B = 0.001967 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.527396 B =14229.071169 C =14513.178964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.085 4.085 4 C -0.118 4.118 5 C -0.087 4.087 6 C -0.061 4.061 7 C -0.041 4.041 8 C -0.139 4.139 9 C -0.143 4.143 10 C 0.524 3.476 11 O -0.526 6.526 12 N -0.696 5.696 13 C 0.096 3.904 14 H 0.130 0.870 15 C -0.183 4.183 16 H 0.103 0.897 17 C 0.155 3.845 18 N -0.593 5.593 19 C -0.227 4.227 20 H 0.077 0.923 21 C -0.006 4.006 22 N -0.915 5.915 23 Si 0.913 3.087 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.185 3.815 28 C -0.178 4.178 29 H 0.101 0.899 30 C -0.111 4.111 31 C -0.120 4.120 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.397 0.603 46 H 0.051 0.949 47 H 0.026 0.974 48 H 0.255 0.745 49 H 0.092 0.908 50 H 0.026 0.974 51 H 0.125 0.875 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.080 -8.522 -4.967 27.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.085 4.085 4 C -0.136 4.136 5 C -0.105 4.105 6 C -0.061 4.061 7 C -0.045 4.045 8 C -0.196 4.196 9 C -0.200 4.200 10 C 0.309 3.691 11 O -0.401 6.401 12 N -0.345 5.345 13 C -0.010 4.010 14 H 0.148 0.852 15 C -0.205 4.205 16 H 0.121 0.879 17 C 0.029 3.971 18 N -0.317 5.317 19 C -0.355 4.355 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.561 5.561 23 Si 0.743 3.257 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.059 3.941 28 C -0.200 4.200 29 H 0.119 0.881 30 C -0.129 4.129 31 C -0.138 4.138 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.231 0.769 46 H 0.070 0.930 47 H 0.044 0.956 48 H 0.065 0.935 49 H 0.110 0.890 50 H 0.044 0.956 51 H 0.143 0.857 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -25.386 -9.220 -4.788 27.429 hybrid contribution 0.590 1.107 -0.028 1.255 sum -24.795 -8.112 -4.817 26.530 Atomic orbital electron populations 1.21741 0.94837 1.01546 1.02150 1.20538 0.96037 0.92872 1.02820 1.19861 0.99287 0.96055 0.93277 1.20943 1.00428 0.94745 0.97454 1.20879 0.97468 0.94684 0.97501 1.19233 0.99352 0.93898 0.93610 1.19716 0.92932 0.94243 0.97575 1.21907 0.98949 0.98693 1.00086 1.21945 1.03043 1.01501 0.93560 1.20302 0.86871 0.83552 0.78327 1.90732 1.65735 1.33111 1.50534 1.45371 1.17929 1.08266 1.62897 1.21836 0.82341 0.96518 1.00260 0.85218 1.24260 1.00894 0.98228 0.97082 0.87936 1.21121 0.85702 0.98144 0.92163 1.45172 1.15777 1.58428 1.12277 1.18995 0.87368 1.15028 1.14144 0.90544 1.24926 0.97357 0.98373 0.99649 1.69889 1.26879 1.32980 1.26344 0.86088 0.82298 0.80100 0.77170 1.21482 1.21583 1.20518 1.21078 0.87058 0.95029 0.90973 1.24710 0.96945 1.02486 0.95817 0.88114 1.21089 0.99454 0.94780 0.97603 1.20930 1.00745 0.94762 0.97381 0.92618 0.92532 0.92596 0.91132 0.91097 0.86314 0.86459 0.91159 0.91682 0.91710 0.91606 0.91427 0.90980 0.76902 0.93012 0.95583 0.93525 0.88991 0.95634 0.85698 0.86322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.15 0.37 -0.56 16 2 C -0.09 -0.65 6.06 -27.88 -0.17 -0.82 16 3 C -0.08 -0.84 5.13 -104.62 -0.54 -1.38 16 4 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16 5 C -0.09 -1.03 8.28 -39.58 -0.33 -1.36 16 6 C -0.06 -0.69 4.26 -104.63 -0.45 -1.14 16 7 C -0.04 -0.43 0.72 -156.81 -0.11 -0.54 16 8 C -0.14 -1.11 8.09 37.16 0.30 -0.81 16 9 C -0.14 -1.20 7.10 37.16 0.26 -0.93 16 10 C 0.52 7.43 6.34 -10.98 -0.07 7.36 16 11 O -0.53 -9.79 15.05 5.56 0.08 -9.70 16 12 N -0.70 -9.31 5.40 -53.81 -0.29 -9.60 16 13 C 0.10 1.64 5.98 -67.93 -0.41 1.23 16 14 H 0.13 2.55 7.40 -51.93 -0.38 2.17 16 15 C -0.18 -3.23 7.05 -89.29 -0.63 -3.86 16 16 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 17 C 0.16 3.29 7.04 -2.41 -0.02 3.27 16 18 N -0.59 -15.31 3.38 -168.83 -0.57 -15.88 16 19 C -0.23 -6.35 10.36 -15.06 -0.16 -6.50 16 20 H 0.08 2.06 7.84 -52.49 -0.41 1.64 16 21 C -0.01 -0.17 5.42 -17.43 -0.09 -0.26 16 22 N -0.91 -27.00 10.81 55.49 0.60 -26.40 16 23 Si 0.91 21.97 29.56 -169.99 -5.02 16.95 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.18 4.52 5.71 -2.38 -0.01 4.50 16 28 C -0.18 -3.41 7.05 -89.27 -0.63 -4.04 16 29 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 30 C -0.11 -1.17 8.98 -39.58 -0.36 -1.52 16 31 C -0.12 -1.19 9.70 -39.59 -0.38 -1.58 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 36 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 37 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.12 1.36 7.34 -52.49 -0.39 0.98 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.43 7.26 -51.93 -0.38 0.06 16 41 H 0.06 0.55 7.17 -51.93 -0.37 0.18 16 42 H 0.06 0.49 7.98 -51.93 -0.41 0.07 16 43 H 0.07 0.63 7.33 -51.93 -0.38 0.25 16 44 H 0.07 0.47 7.70 -51.93 -0.40 0.07 16 45 H 0.40 4.15 7.75 -40.82 -0.32 3.83 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 49 H 0.09 2.50 6.48 -51.93 -0.34 2.16 16 50 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.13 1.08 5.90 -52.49 -0.31 0.78 16 52 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 412.41 15.07 6.21 6.21 Total: -1.00 -33.02 412.41 -11.50 -44.52 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -8.71 Total: 4.49 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -3.80 Total: -10.58 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: -0.26 Total: -51.89 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.08 Total: -9.70 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.02 -11.50 -44.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962248586.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.795 kcal (2) G-P(sol) polarization free energy of solvation -33.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds