Wall clock time and date at job start Wed Apr 1 2020 02:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38235 * 119.99601 * 2 1 4 4 C 1.38239 * 119.99293 * 180.26968 * 3 2 1 5 5 C 1.38229 * 120.00443 * 359.74611 * 4 3 2 6 6 C 1.38235 * 120.00052 * 359.97438 * 5 4 3 7 7 C 1.50697 * 120.00555 * 180.02562 * 6 5 4 8 8 C 1.38238 * 119.99818 * 179.73699 * 2 1 3 9 9 C 1.50696 * 120.00194 * 0.02562 * 8 2 1 10 10 C 1.50702 * 109.46747 * 269.72420 * 9 8 2 11 11 O 1.21281 * 120.00352 * 0.02562 * 10 9 8 12 12 N 1.34781 * 119.99605 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99983 * 180.02562 * 12 10 9 14 14 C 1.53954 * 113.58380 * 205.00420 * 13 12 10 15 15 C 1.52905 * 86.78040 * 220.66109 * 14 13 12 16 16 C 1.52917 * 121.13340 * 150.61456 * 15 14 13 17 17 C 1.53957 * 86.77928 * 150.61497 * 16 15 14 18 18 N 1.46499 * 113.58030 * 220.66444 * 17 16 15 19 19 C 1.36934 * 119.99782 * 205.00320 * 18 17 16 20 20 H 1.07999 * 120.00173 * 0.02562 * 19 18 17 21 21 C 1.38814 * 119.99964 * 179.97438 * 19 18 17 22 22 N 1.31618 * 119.99878 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00317 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47337 * 89.99817 * 23 21 19 25 25 H 1.48495 * 109.47308 * 210.00239 * 23 21 19 26 26 H 1.48505 * 109.46714 * 329.99624 * 23 21 19 27 27 C 1.52909 * 121.13655 * 259.17353 * 15 14 13 28 28 C 1.52910 * 88.04631 * 24.89586 * 15 14 13 29 29 H 1.08998 * 109.47217 * 270.25767 * 1 2 3 30 30 H 1.09000 * 109.47032 * 30.25766 * 1 2 3 31 31 H 1.09001 * 109.46776 * 150.26192 * 1 2 3 32 32 H 1.07990 * 120.00781 * 0.03203 * 3 2 1 33 33 H 1.08007 * 119.99684 * 179.75850 * 4 3 2 34 34 H 1.08004 * 120.00326 * 179.97438 * 5 4 3 35 35 H 1.09001 * 109.47302 * 270.02511 * 7 6 5 36 36 H 1.09002 * 109.46665 * 30.01763 * 7 6 5 37 37 H 1.09000 * 109.47682 * 150.01964 * 7 6 5 38 38 H 1.08996 * 109.47304 * 149.72806 * 9 8 2 39 39 H 1.08995 * 109.47130 * 29.72270 * 9 8 2 40 40 H 0.97003 * 120.00247 * 0.02562 * 12 10 9 41 41 H 1.09009 * 112.87577 * 336.14188 * 13 12 10 42 42 H 1.08990 * 113.66623 * 106.18266 * 14 13 12 43 43 H 1.09000 * 113.74113 * 335.14493 * 14 13 12 44 44 H 1.08997 * 113.66031 * 265.08631 * 16 15 14 45 45 H 1.09002 * 113.66187 * 36.15037 * 16 15 14 46 46 H 1.09001 * 113.57949 * 89.86751 * 17 16 15 47 47 H 0.96996 * 119.99947 * 24.99948 * 18 17 16 48 48 H 0.97005 * 120.00007 * 180.02562 * 22 21 19 49 49 H 1.09001 * 113.66026 * 323.85782 * 27 15 14 50 50 H 1.08998 * 113.66179 * 94.82069 * 27 15 14 51 51 H 1.09006 * 113.66074 * 89.56978 * 28 15 14 52 52 H 1.08994 * 113.66448 * 220.62942 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1971 -0.0056 5 6 4.2717 0.0001 -0.0060 6 6 3.5806 -1.1971 -0.0001 7 6 4.3340 -2.5022 0.0001 8 6 2.1982 -1.1972 0.0055 9 6 1.4447 -2.5022 0.0109 10 6 1.1990 -2.9344 1.4336 11 8 1.5961 -2.2498 2.3526 12 7 0.5369 -4.0812 1.6846 13 6 0.2975 -4.5012 3.0675 14 6 0.1085 -6.0208 3.2259 15 6 -1.0048 -5.6917 4.2210 16 6 -2.1948 -6.6321 4.4154 17 6 -2.2605 -6.1093 5.8620 18 7 -2.5375 -7.1542 6.8508 19 6 -3.1201 -6.8282 8.0464 20 1 -3.3758 -5.8009 8.2602 21 6 -3.3832 -7.8183 8.9831 22 7 -3.0721 -9.0703 8.7223 23 14 -4.1786 -7.3738 10.6138 24 1 -5.6556 -7.4530 10.4820 25 1 -3.7235 -8.3226 11.6615 26 1 -3.7889 -5.9922 10.9942 27 6 -0.7652 -5.7680 5.7292 28 6 -1.1679 -4.3460 3.5134 29 1 -0.3633 0.0046 1.0276 30 1 -0.3633 0.8877 -0.5178 31 1 -0.3633 -0.8924 -0.5098 32 1 1.6583 2.1325 0.0005 33 1 4.1205 2.1325 -0.0096 34 1 5.3517 0.0000 -0.0108 35 1 4.5119 -2.8193 -1.0275 36 1 5.2884 -2.3707 0.5100 37 1 3.7469 -3.2607 0.5179 38 1 2.0318 -3.2629 -0.5036 39 1 0.4904 -2.3729 -0.4995 40 1 0.2189 -4.6286 0.9496 41 1 1.0143 -4.0754 3.7698 42 1 0.9640 -6.5234 3.6769 43 1 -0.2453 -6.5157 2.3214 44 1 -3.0647 -6.3669 3.8145 45 1 -1.9343 -7.6881 4.3434 46 1 -2.8986 -5.2336 5.9806 47 1 -2.3083 -8.0768 6.6586 48 1 -3.2563 -9.7622 9.3767 49 1 -0.1028 -6.5811 6.0264 50 1 -0.4914 -4.8130 6.1776 51 1 -1.8807 -4.3688 2.6890 52 1 -1.3319 -3.5108 4.1942 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963897784.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:39 Heat of formation + Delta-G solvation = 28.983165 kcal Electronic energy + Delta-G solvation = -28999.798366 eV Core-core repulsion = 25158.090353 eV Total energy + Delta-G solvation = -3841.708013 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.78281 -40.11019 -38.77546 -35.86207 -33.85942 -33.73696 -33.50410 -32.13560 -29.67324 -29.04223 -26.91369 -26.90269 -25.76790 -25.18499 -24.20927 -22.78371 -21.33251 -20.96209 -20.44330 -19.97121 -17.81634 -17.20571 -17.02062 -16.65235 -16.55304 -15.99940 -15.27430 -14.86166 -14.75072 -14.71383 -14.41665 -14.09093 -13.75074 -13.50002 -13.40410 -13.19858 -13.17077 -12.99092 -12.87382 -12.75214 -12.55143 -12.38967 -11.94752 -11.88982 -11.78004 -11.62099 -11.26640 -11.20112 -11.15870 -11.09119 -10.84628 -10.74628 -10.30643 -10.05370 -9.95162 -9.78631 -9.67802 -9.37999 -9.05355 -8.84876 -8.80366 -8.75480 -6.93738 -5.76657 -3.04920 1.10407 1.16277 2.49475 3.03830 3.44119 3.49534 3.51157 3.55649 4.30000 4.48614 4.55752 4.58610 4.62606 4.68594 4.70188 4.75618 4.79268 4.82775 4.92279 5.00268 5.04992 5.13801 5.29846 5.38451 5.38699 5.40338 5.42929 5.46574 5.56300 5.57512 5.61551 5.71216 5.81774 5.89449 5.92347 5.95822 5.95943 5.99028 6.13080 6.20938 6.26329 6.26704 6.30271 6.37457 6.41837 6.42939 6.54084 6.66617 6.79996 6.95022 7.15329 7.38504 7.71679 8.11289 8.42298 9.53309 10.12075 10.46477 11.45825 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.022938 B = 0.001759 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.368735 B =15918.551947 C =16234.429483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.067 4.067 3 C -0.127 4.127 4 C -0.113 4.113 5 C -0.127 4.127 6 C -0.068 4.068 7 C -0.117 4.117 8 C -0.066 4.066 9 C -0.110 4.110 10 C 0.514 3.486 11 O -0.528 6.528 12 N -0.722 5.722 13 C 0.124 3.876 14 C -0.131 4.131 15 C -0.101 4.101 16 C -0.135 4.135 17 C 0.168 3.832 18 N -0.713 5.713 19 C -0.242 4.242 20 H 0.071 0.929 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.142 4.142 28 C -0.124 4.124 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.399 0.601 41 H 0.113 0.887 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.058 0.942 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.080 0.920 50 H 0.056 0.944 51 H 0.082 0.918 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.333 15.634 -25.626 32.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.067 4.067 3 C -0.145 4.145 4 C -0.131 4.131 5 C -0.145 4.145 6 C -0.068 4.068 7 C -0.174 4.174 8 C -0.066 4.066 9 C -0.150 4.150 10 C 0.299 3.701 11 O -0.403 6.403 12 N -0.373 5.373 13 C 0.020 3.980 14 C -0.169 4.169 15 C -0.102 4.102 16 C -0.175 4.175 17 C 0.057 3.943 18 N -0.351 5.351 19 C -0.373 4.373 20 H 0.089 0.911 21 C -0.210 4.210 22 N -0.582 5.582 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.183 4.183 28 C -0.163 4.163 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.233 0.767 41 H 0.131 0.869 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.077 0.923 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.099 0.901 50 H 0.074 0.926 51 H 0.100 0.900 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.528 16.192 -24.756 32.125 hybrid contribution -0.442 -0.371 0.527 0.781 sum 12.086 15.822 -24.230 31.360 Atomic orbital electron populations 1.20879 0.91381 1.02532 1.02763 1.19686 0.95876 0.92578 0.98608 1.20946 0.94278 0.97281 1.01963 1.21083 0.94300 0.97883 0.99856 1.20945 0.99595 0.91955 1.02018 1.19682 0.92939 0.95469 0.98709 1.20831 1.00099 0.94415 1.02010 1.18918 0.92714 0.93087 1.01923 1.20776 1.02388 0.96542 0.95246 1.20502 0.77589 0.80941 0.91033 1.90741 1.50054 1.53133 1.46402 1.46097 1.58249 1.23978 1.08933 1.22592 0.97397 0.95328 0.82686 1.23174 0.99375 0.94622 0.99721 1.22090 0.96606 0.95887 0.95651 1.23266 0.96024 0.98795 0.99379 1.21535 0.92630 0.92622 0.87561 1.42416 1.71987 1.05652 1.15062 1.19318 1.31764 0.93475 0.92735 0.91115 1.24761 1.02036 0.95390 0.98845 1.69661 1.53341 0.99454 1.35703 0.86189 0.79047 0.77287 0.83687 1.21737 1.21787 1.20730 1.23601 1.02328 1.01167 0.91209 1.23136 0.96140 0.97261 0.99772 0.90775 0.91492 0.91494 0.86197 0.86201 0.86218 0.91105 0.91359 0.91620 0.88003 0.87781 0.76737 0.86941 0.90897 0.89948 0.92301 0.90231 0.90825 0.78131 0.93520 0.90146 0.92561 0.89954 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 9.60 36.01 0.35 -0.59 16 2 C -0.07 -0.66 5.88 -104.62 -0.62 -1.27 16 3 C -0.13 -1.17 9.70 -39.58 -0.38 -1.55 16 4 C -0.11 -1.00 10.05 -39.58 -0.40 -1.40 16 5 C -0.13 -1.16 9.70 -39.59 -0.38 -1.54 16 6 C -0.07 -0.66 5.88 -104.62 -0.62 -1.27 16 7 C -0.12 -0.89 9.19 36.00 0.33 -0.56 16 8 C -0.07 -0.65 4.37 -104.62 -0.46 -1.11 16 9 C -0.11 -0.85 4.75 -29.04 -0.14 -0.99 16 10 C 0.51 5.54 7.42 -10.98 -0.08 5.46 16 11 O -0.53 -8.15 15.64 5.56 0.09 -8.06 16 12 N -0.72 -6.60 5.35 -52.85 -0.28 -6.89 16 13 C 0.12 1.43 4.24 -66.95 -0.28 1.15 16 14 C -0.13 -1.48 7.59 -26.28 -0.20 -1.68 16 15 C -0.10 -1.40 1.11 -154.71 -0.17 -1.57 16 16 C -0.14 -2.18 7.59 -26.28 -0.20 -2.38 16 17 C 0.17 3.34 4.48 -66.95 -0.30 3.04 16 18 N -0.71 -17.96 5.40 -52.47 -0.28 -18.25 16 19 C -0.24 -6.76 9.97 -15.06 -0.15 -6.91 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.27 13.06 55.49 0.72 -27.54 16 23 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 C -0.14 -2.47 7.64 -26.28 -0.20 -2.67 16 28 C -0.12 -1.53 7.64 -26.28 -0.20 -1.73 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 31 H 0.07 0.43 5.94 -51.93 -0.31 0.12 16 32 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 34 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 37 H 0.06 0.54 6.37 -51.93 -0.33 0.21 16 38 H 0.10 0.57 6.70 -51.93 -0.35 0.22 16 39 H 0.10 0.59 5.94 -51.93 -0.31 0.28 16 40 H 0.40 2.44 8.73 -40.82 -0.36 2.08 16 41 H 0.11 1.56 7.47 -51.92 -0.39 1.17 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.08 1.32 8.12 -51.93 -0.42 0.90 16 46 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 47 H 0.38 10.24 7.92 -40.82 -0.32 9.91 16 48 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 49 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 50 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 51 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 52 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 417.65 15.07 6.29 6.29 Total: -1.00 -33.69 417.65 -11.35 -45.03 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -8.66 Total: 9.97 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -4.20 Total: -18.08 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: 0.16 Total: -52.67 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.09 Total: -8.06 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.69 -11.35 -45.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963897784.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.016 kcal (2) G-P(sol) polarization free energy of solvation -33.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds