Wall clock time and date at job start Wed Apr 1 2020 03:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47181 * 2 1 4 4 C 1.38261 * 120.00276 * 265.25895 * 3 2 1 5 5 C 1.38212 * 119.99905 * 180.27838 * 4 3 2 6 6 C 1.38261 * 120.00202 * 359.73777 * 5 4 3 7 7 C 1.38217 * 119.99800 * 359.97438 * 6 5 4 8 8 C 1.38215 * 119.99731 * 85.00205 * 3 2 1 9 9 C 1.50698 * 120.00290 * 359.97438 * 8 3 2 10 10 C 1.50703 * 109.46575 * 84.72814 * 9 8 3 11 11 O 1.21282 * 120.00325 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99822 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99961 * 180.02562 * 12 10 9 14 14 C 1.53948 * 113.58037 * 155.00042 * 13 12 10 15 15 C 1.52908 * 86.78752 * 89.86710 * 14 13 12 16 16 C 1.52906 * 121.14082 * 150.61758 * 15 14 13 17 17 C 1.53954 * 86.88484 * 150.57014 * 16 15 14 18 18 N 1.46495 * 113.58384 * 220.70894 * 17 16 15 19 19 C 1.36932 * 119.99974 * 205.00190 * 18 17 16 20 20 H 1.07996 * 120.00485 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99871 * 179.97438 * 19 18 17 22 22 N 1.31620 * 120.00199 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00280 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47310 * 90.00087 * 23 21 19 25 25 H 1.48504 * 109.47343 * 210.00382 * 23 21 19 26 26 H 1.48504 * 109.46757 * 330.00054 * 23 21 19 27 27 C 1.52914 * 121.13550 * 259.18373 * 15 14 13 28 28 C 1.52907 * 88.04047 * 24.89729 * 15 14 13 29 29 H 1.08996 * 109.47440 * 59.99739 * 1 2 3 30 30 H 1.08993 * 109.47230 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46996 * 300.00131 * 1 2 3 32 32 H 1.08998 * 109.46780 * 240.00115 * 2 1 3 33 33 H 1.09000 * 109.47020 * 120.00541 * 2 1 3 34 34 H 1.07996 * 119.99832 * 0.03641 * 4 3 2 35 35 H 1.07998 * 119.99376 * 179.76831 * 5 4 3 36 36 H 1.07996 * 119.99815 * 180.02562 * 6 5 4 37 37 H 1.07997 * 119.99887 * 179.97438 * 7 6 5 38 38 H 1.08996 * 109.47366 * 324.73394 * 9 8 3 39 39 H 1.09000 * 109.47356 * 204.72235 * 9 8 3 40 40 H 0.97001 * 119.99900 * 359.97438 * 12 10 9 41 41 H 1.08999 * 112.87810 * 23.85307 * 13 12 10 42 42 H 1.08994 * 113.66498 * 335.39202 * 14 13 12 43 43 H 1.09005 * 113.74881 * 204.35142 * 14 13 12 44 44 H 1.09002 * 113.66405 * 265.09178 * 16 15 14 45 45 H 1.08998 * 113.66160 * 36.05328 * 16 15 14 46 46 H 1.08999 * 113.57483 * 89.91371 * 17 16 15 47 47 H 0.97000 * 119.99646 * 25.00298 * 18 17 16 48 48 H 0.96999 * 120.00914 * 179.97438 * 22 21 19 49 49 H 1.08998 * 113.65700 * 323.84770 * 27 15 14 50 50 H 1.08999 * 113.66069 * 94.81063 * 27 15 14 51 51 H 1.09005 * 113.66022 * 89.57540 * 28 15 14 52 52 H 1.09001 * 113.66746 * 220.62682 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3561 2.0396 -1.1932 5 6 2.8223 3.3407 -1.1927 6 6 2.9597 4.0254 0.0006 7 6 2.6304 3.4087 1.1930 8 6 2.1644 2.1070 1.1925 9 6 1.8055 1.4348 2.4925 10 6 2.9822 0.6319 2.9843 11 8 4.0111 0.6083 2.3426 12 7 2.8912 -0.0601 4.1374 13 6 4.0352 -0.8401 4.6158 14 6 4.0381 -1.0578 6.1398 15 6 3.2338 -2.3306 5.8730 16 6 3.3322 -3.5382 6.8057 17 6 1.8822 -3.8621 6.4021 18 7 1.0496 -4.3130 7.5198 19 6 -0.0455 -5.1005 7.2837 20 1 -0.2956 -5.3889 6.2734 21 6 -0.8342 -5.5282 8.3429 22 7 -0.5292 -5.1772 9.5742 23 14 -2.3277 -6.6031 8.0209 24 1 -1.9278 -8.0325 8.0659 25 1 -3.3571 -6.3441 9.0594 26 1 -2.8854 -6.2870 6.6814 27 6 1.7184 -2.3649 6.0739 28 6 3.8465 -2.3613 4.4723 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.2485 1.5050 -2.1254 35 1 3.0787 3.8228 -2.1245 36 1 3.3236 5.0422 0.0010 37 1 2.7382 3.9433 2.1252 38 1 0.9538 0.7727 2.3363 39 1 1.5467 2.1912 3.2334 40 1 2.0684 -0.0409 4.6508 41 1 4.9869 -0.4800 4.2249 42 1 3.4845 -0.2980 6.6913 43 1 5.0286 -1.2451 6.5546 44 1 4.0548 -4.2859 6.4786 45 1 3.4446 -3.2714 7.8565 46 1 1.8072 -4.5105 5.5292 47 1 1.2739 -4.0537 8.4272 48 1 -1.0805 -5.4757 10.3144 49 1 1.3756 -1.7683 6.9193 50 1 1.1518 -2.1737 5.1626 51 1 4.7838 -2.9151 4.4169 52 1 3.1398 -2.6428 3.6917 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964030411.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:09 Heat of formation + Delta-G solvation = 28.071094 kcal Electronic energy + Delta-G solvation = -29491.461736 eV Core-core repulsion = 25649.714172 eV Total energy + Delta-G solvation = -3841.747563 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.82374 -40.03820 -38.65500 -35.81463 -34.51709 -33.52443 -32.85876 -32.03650 -29.75666 -29.58115 -27.82532 -25.76638 -25.21900 -24.33491 -24.03443 -22.85924 -22.01420 -21.06895 -20.29515 -19.85125 -17.87510 -17.28788 -17.04780 -16.68037 -16.34637 -15.93008 -15.25866 -15.24867 -14.76002 -14.69084 -14.21525 -14.02194 -13.96014 -13.74414 -13.59719 -13.26759 -13.17723 -12.95410 -12.74994 -12.40394 -12.31261 -12.17161 -12.01260 -11.96003 -11.65852 -11.50211 -11.29662 -11.03017 -11.00283 -10.89340 -10.85457 -10.79494 -10.22800 -10.02606 -9.99690 -9.81542 -9.72499 -9.36477 -9.02389 -8.97282 -8.86919 -8.76139 -6.97672 -5.80299 -3.08838 1.14527 1.23045 2.53853 3.05621 3.40902 3.46302 3.47755 3.63269 4.38629 4.52742 4.55083 4.58780 4.67777 4.70824 4.75140 4.79435 4.81580 4.92125 4.94484 5.01208 5.14367 5.18204 5.29158 5.34547 5.37868 5.42074 5.44559 5.65543 5.68185 5.74016 5.77815 5.81514 5.82748 5.86434 5.91590 5.93571 5.97666 6.03874 6.08367 6.18714 6.24105 6.28876 6.32248 6.33843 6.38106 6.47229 6.52547 6.62464 6.82794 6.92386 7.11299 7.45078 7.67514 8.15722 8.38521 9.49538 10.08321 10.42584 11.42086 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014368 B = 0.002243 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.363346 B =12482.871844 C =13725.185613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.061 4.061 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.126 4.126 7 C -0.105 4.105 8 C -0.061 4.061 9 C -0.109 4.109 10 C 0.517 3.483 11 O -0.533 6.533 12 N -0.709 5.709 13 C 0.123 3.877 14 C -0.133 4.133 15 C -0.104 4.104 16 C -0.139 4.139 17 C 0.170 3.830 18 N -0.713 5.713 19 C -0.242 4.242 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.143 4.143 28 C -0.126 4.126 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.403 0.597 41 H 0.097 0.903 42 H 0.070 0.930 43 H 0.091 0.909 44 H 0.058 0.942 45 H 0.079 0.921 46 H 0.073 0.927 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.079 0.921 50 H 0.053 0.947 51 H 0.088 0.912 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.210 17.463 -18.011 26.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.062 4.062 4 C -0.137 4.137 5 C -0.137 4.137 6 C -0.144 4.144 7 C -0.123 4.123 8 C -0.062 4.062 9 C -0.149 4.149 10 C 0.303 3.697 11 O -0.409 6.409 12 N -0.361 5.361 13 C 0.017 3.983 14 C -0.171 4.171 15 C -0.105 4.105 16 C -0.178 4.178 17 C 0.058 3.942 18 N -0.351 5.351 19 C -0.374 4.374 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.184 4.184 28 C -0.164 4.164 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.238 0.762 41 H 0.115 0.885 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.077 0.923 45 H 0.097 0.903 46 H 0.091 0.909 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.098 0.902 50 H 0.072 0.928 51 H 0.107 0.893 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.782 17.306 -18.514 26.511 hybrid contribution -1.110 -0.456 0.534 1.313 sum 6.673 16.850 -17.980 25.529 Atomic orbital electron populations 1.21781 0.94526 1.02108 1.02134 1.20579 0.96086 0.92748 1.03223 1.19692 0.98111 0.95749 0.92604 1.20983 1.00162 0.95211 0.97352 1.21099 0.99733 0.94847 0.97999 1.21052 1.00874 0.99922 0.92556 1.20968 0.98676 0.94484 0.98170 1.19095 1.00025 0.93998 0.93063 1.20771 0.97806 1.00225 0.96100 1.20476 0.89334 0.79284 0.80599 1.90719 1.31030 1.63234 1.55932 1.45732 1.16974 1.49280 1.24092 1.21837 0.89796 0.91440 0.95204 1.23151 1.01273 0.98120 0.94535 1.22347 0.97128 0.95387 0.95606 1.23281 0.99498 0.96116 0.98936 1.21530 0.89017 0.91624 0.92041 1.42419 1.29149 1.59278 1.04224 1.19299 1.02159 1.22895 0.93004 0.91162 1.24763 0.99672 1.01245 0.95296 1.69656 1.40701 1.49848 0.97884 0.86202 0.82598 0.80424 0.77041 1.21702 1.21771 1.20750 1.23637 0.91475 1.02733 1.00587 1.23117 1.01183 0.95578 0.96552 0.92497 0.92041 0.92458 0.90975 0.90960 0.86224 0.86284 0.86237 0.86274 0.87568 0.87993 0.76155 0.88501 0.91096 0.89039 0.92276 0.90294 0.90907 0.78124 0.93480 0.90231 0.92826 0.89325 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.72 37.16 0.36 -0.82 16 2 C -0.09 -0.84 5.38 -27.88 -0.15 -0.99 16 3 C -0.06 -0.64 5.13 -104.62 -0.54 -1.18 16 4 C -0.12 -1.14 9.68 -39.58 -0.38 -1.52 16 5 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 6 C -0.13 -1.14 10.05 -39.58 -0.40 -1.54 16 7 C -0.10 -1.03 9.68 -39.58 -0.38 -1.41 16 8 C -0.06 -0.64 4.37 -104.62 -0.46 -1.10 16 9 C -0.11 -0.99 5.16 -29.03 -0.15 -1.14 16 10 C 0.52 6.06 7.00 -10.98 -0.08 5.98 16 11 O -0.53 -8.25 15.64 5.56 0.09 -8.16 16 12 N -0.71 -7.60 5.26 -52.85 -0.28 -7.88 16 13 C 0.12 1.42 4.32 -66.95 -0.29 1.13 16 14 C -0.13 -1.50 7.59 -26.28 -0.20 -1.70 16 15 C -0.10 -1.38 1.03 -154.71 -0.16 -1.54 16 16 C -0.14 -2.21 7.59 -26.28 -0.20 -2.41 16 17 C 0.17 3.25 4.49 -66.84 -0.30 2.95 16 18 N -0.71 -17.47 5.40 -52.37 -0.28 -17.75 16 19 C -0.24 -6.62 9.97 -15.06 -0.15 -6.77 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -27.81 13.06 55.49 0.72 -27.08 16 23 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 C -0.14 -2.26 6.98 -26.18 -0.18 -2.44 16 28 C -0.13 -1.54 7.64 -26.28 -0.20 -1.74 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.44 6.79 -51.93 -0.35 0.09 16 32 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 33 H 0.07 0.77 6.40 -51.93 -0.33 0.44 16 34 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.11 0.83 5.63 -51.93 -0.29 0.54 16 39 H 0.10 0.70 8.05 -51.93 -0.42 0.28 16 40 H 0.40 3.79 8.01 -40.82 -0.33 3.47 16 41 H 0.10 1.21 7.47 -51.93 -0.39 0.82 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.08 1.31 8.12 -51.93 -0.42 0.88 16 46 H 0.07 1.43 8.10 -51.93 -0.42 1.00 16 47 H 0.38 10.03 7.92 -40.82 -0.32 9.71 16 48 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 49 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 50 H 0.05 0.80 8.08 -51.93 -0.42 0.38 16 51 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 52 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 417.69 15.07 6.29 6.29 Total: -1.00 -32.26 417.69 -11.56 -43.82 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -8.73 Total: 11.88 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -4.35 Total: -18.19 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: 0.16 Total: -52.71 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.09 Total: -8.16 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -32.26 -11.56 -43.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964030411.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.888 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds