Wall clock time and date at job start Wed Apr 1 2020 03:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47303 * 2 1 4 4 C 1.38261 * 120.00419 * 269.98572 * 3 2 1 5 5 C 1.38212 * 120.00042 * 179.97438 * 4 3 2 6 6 C 1.38259 * 120.00065 * 359.73665 * 5 4 3 7 7 C 1.38211 * 119.99791 * 0.53594 * 6 5 4 8 8 C 1.50706 * 120.00152 * 179.74227 * 7 6 5 9 9 C 1.50703 * 109.47001 * 269.72492 * 8 7 6 10 10 O 1.21281 * 119.99990 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00069 * 179.97438 * 9 8 7 12 12 C 1.46496 * 120.00214 * 180.02562 * 11 9 8 13 13 C 1.53946 * 113.57954 * 252.71987 * 12 11 9 14 14 C 1.52905 * 86.78550 * 220.66352 * 13 12 11 15 15 C 1.52911 * 121.14169 * 150.61749 * 14 13 12 16 16 C 1.53946 * 86.78353 * 100.82160 * 15 14 13 17 17 N 1.46499 * 113.58091 * 139.33619 * 16 15 14 18 18 C 1.36940 * 119.99956 * 107.27960 * 17 16 15 19 19 H 1.08001 * 119.99644 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00360 * 180.02562 * 18 17 16 21 21 N 1.31618 * 120.00404 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 119.99926 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47485 * 89.99528 * 22 20 18 24 24 H 1.48491 * 109.47316 * 209.99934 * 22 20 18 25 25 H 1.48501 * 109.46917 * 330.00095 * 22 20 18 26 26 C 1.52908 * 121.13983 * 259.18163 * 14 13 12 27 27 C 1.52912 * 88.04002 * 24.89919 * 14 13 12 28 28 C 1.38214 * 119.99919 * 89.99925 * 3 2 1 29 29 H 1.09005 * 109.46759 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46894 * 299.99646 * 1 2 3 31 31 H 1.08994 * 109.47051 * 60.00025 * 1 2 3 32 32 H 1.09007 * 109.47072 * 240.00206 * 2 1 3 33 33 H 1.08993 * 109.47493 * 120.00607 * 2 1 3 34 34 H 1.08002 * 119.99635 * 359.96612 * 4 3 2 35 35 H 1.08000 * 119.99941 * 179.97438 * 5 4 3 36 36 H 1.08004 * 120.00268 * 180.27804 * 6 5 4 37 37 H 1.09000 * 109.46646 * 29.71950 * 8 7 6 38 38 H 1.09000 * 109.47248 * 149.72667 * 8 7 6 39 39 H 0.97000 * 119.99813 * 0.02562 * 11 9 8 40 40 H 1.08999 * 112.82603 * 23.91536 * 12 11 9 41 41 H 1.09002 * 113.66700 * 335.13582 * 13 12 11 42 42 H 1.09005 * 113.66091 * 106.18988 * 13 12 11 43 43 H 1.08997 * 113.66589 * 215.30041 * 15 14 13 44 44 H 1.08999 * 113.65972 * 346.35058 * 15 14 13 45 45 H 1.08998 * 113.58512 * 270.13437 * 16 15 14 46 46 H 0.97002 * 120.00363 * 287.28734 * 17 16 15 47 47 H 0.97000 * 119.99999 * 180.02562 * 21 20 18 48 48 H 1.09005 * 113.66223 * 13.65002 * 26 14 13 49 49 H 1.09004 * 113.66824 * 144.60649 * 26 14 13 50 50 H 1.09009 * 113.66071 * 220.62692 * 27 14 13 51 51 H 1.08992 * 113.74497 * 89.58779 * 27 14 13 52 52 H 1.07999 * 119.99762 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2631 2.0725 -1.1973 5 6 2.7234 3.3757 -1.1972 6 6 2.9478 4.0295 0.0001 7 6 2.7225 3.3762 1.1970 8 6 2.9727 4.0868 2.5023 9 6 4.3959 3.8506 2.9381 10 8 5.1341 3.1716 2.2562 11 7 4.8482 4.3938 4.0855 12 6 6.2318 4.1647 4.5089 13 6 6.3589 3.2013 5.7029 14 6 7.4388 4.1428 6.2371 15 6 7.6891 4.2881 7.7385 16 6 8.8925 3.3486 7.5409 17 7 10.0768 3.7439 8.3073 18 6 10.4547 3.0191 9.4060 19 1 9.8800 2.1557 9.7071 20 6 11.5765 3.3939 10.1325 21 7 11.9401 2.6969 11.1882 22 14 12.5702 4.8876 9.6120 23 1 12.0353 6.0976 10.2864 24 1 13.9917 4.6947 9.9957 25 1 12.4736 5.0579 8.1400 26 6 8.9237 3.8161 6.0744 27 6 6.7836 5.2659 5.4324 28 6 2.2627 2.0723 1.1970 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.0838 1.5631 -2.1327 35 1 2.9040 3.8847 -2.1325 36 1 3.3032 5.0494 0.0002 37 1 2.8054 5.1560 2.3716 38 1 2.2917 3.7025 3.2616 39 1 4.2577 4.9366 4.6310 40 1 6.8935 3.9207 3.6778 41 1 5.4670 3.1592 6.3280 42 1 6.7342 2.2147 5.4309 43 1 7.9673 5.2979 8.0400 44 1 6.8988 3.8625 8.3569 45 1 8.6456 2.2933 7.6569 46 1 10.5932 4.5192 8.0367 47 1 12.7238 2.9591 11.6961 48 1 9.1198 3.0135 5.3634 49 1 9.5489 4.6931 5.9065 50 1 7.4983 5.9288 4.9444 51 1 6.0110 5.8052 5.9803 52 1 2.0823 1.5633 2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964066443.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:13 Heat of formation + Delta-G solvation = 28.525810 kcal Electronic energy + Delta-G solvation = -28346.484753 eV Core-core repulsion = 24504.756907 eV Total energy + Delta-G solvation = -3841.727846 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.73559 -40.00261 -38.91924 -36.02479 -34.74342 -33.73280 -32.80706 -32.06119 -30.18680 -29.81394 -27.94461 -25.83981 -25.35261 -24.28774 -24.15030 -22.83898 -22.03847 -21.03074 -20.37742 -20.03085 -18.08334 -17.30317 -17.19378 -16.86618 -16.29136 -16.16337 -15.40275 -15.30829 -14.93739 -14.89452 -14.22009 -14.16275 -14.03808 -13.95490 -13.64607 -13.35584 -13.20982 -12.78175 -12.65505 -12.48599 -12.42914 -12.34956 -12.18913 -12.06321 -11.81133 -11.66771 -11.60111 -11.17875 -11.12523 -11.08215 -11.05187 -10.75503 -10.28332 -10.20856 -9.97372 -9.86685 -9.67465 -9.45476 -9.10966 -9.03648 -8.88377 -8.85898 -7.25158 -5.77420 -3.12591 1.06198 1.15150 2.44898 2.98791 3.37197 3.40083 3.45079 3.55371 4.26995 4.37935 4.48174 4.53567 4.57626 4.58766 4.66110 4.73508 4.78501 4.81170 4.84058 4.91992 4.99267 5.09085 5.12487 5.24285 5.26198 5.32416 5.39179 5.49117 5.53550 5.54743 5.61736 5.66572 5.74180 5.77640 5.80650 5.82273 5.86380 5.86604 6.02277 6.09820 6.12838 6.19777 6.24063 6.28724 6.31495 6.35432 6.46430 6.56233 6.74672 6.80268 7.00981 7.33252 7.99790 8.06025 8.42530 9.20669 9.93409 10.13617 11.40916 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.024634 B = 0.001628 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.361580 B =17193.019220 C =17667.897254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.081 4.081 4 C -0.119 4.119 5 C -0.116 4.116 6 C -0.111 4.111 7 C -0.062 4.062 8 C -0.104 4.104 9 C 0.513 3.487 10 O -0.530 6.530 11 N -0.721 5.721 12 C 0.123 3.877 13 C -0.124 4.124 14 C -0.102 4.102 15 C -0.148 4.148 16 C 0.174 3.826 17 N -0.738 5.738 18 C -0.247 4.247 19 H 0.091 0.909 20 C 0.004 3.996 21 N -0.934 5.934 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.132 4.132 27 C -0.130 4.130 28 C -0.102 4.102 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.399 0.601 40 H 0.113 0.887 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.059 0.941 45 H 0.082 0.918 46 H 0.362 0.638 47 H 0.259 0.741 48 H 0.064 0.936 49 H 0.079 0.921 50 H 0.071 0.929 51 H 0.084 0.916 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.059 3.187 -24.135 35.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 C -0.081 4.081 4 C -0.137 4.137 5 C -0.134 4.134 6 C -0.129 4.129 7 C -0.062 4.062 8 C -0.144 4.144 9 C 0.298 3.702 10 O -0.406 6.406 11 N -0.372 5.372 12 C 0.019 3.981 13 C -0.162 4.162 14 C -0.103 4.103 15 C -0.189 4.189 16 C 0.063 3.937 17 N -0.378 5.378 18 C -0.377 4.377 19 H 0.108 0.892 20 C -0.192 4.192 21 N -0.581 5.581 22 Si 0.715 3.285 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.171 4.171 27 C -0.169 4.169 28 C -0.120 4.120 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.234 0.766 40 H 0.131 0.869 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.077 0.923 45 H 0.100 0.900 46 H 0.195 0.805 47 H 0.069 0.931 48 H 0.083 0.917 49 H 0.097 0.903 50 H 0.090 0.910 51 H 0.102 0.898 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -25.458 2.497 -24.427 35.370 hybrid contribution 0.558 1.458 0.075 1.563 sum -24.900 3.955 -24.353 35.053 Atomic orbital electron populations 1.21742 0.94711 1.01719 1.02133 1.20552 0.96125 0.92685 1.03015 1.19840 0.99034 0.96138 0.93072 1.21004 1.00300 0.95003 0.97439 1.21066 0.99532 0.94968 0.97851 1.20945 0.99944 0.99957 0.92030 1.19227 0.99058 0.94382 0.93553 1.20705 0.94797 1.02507 0.96405 1.20551 0.89387 0.79466 0.80754 1.90743 1.58050 1.38061 1.53727 1.46081 1.13740 1.53463 1.23925 1.22610 0.82267 0.97151 0.96085 1.23137 0.98380 0.98334 0.96386 1.22062 0.94912 0.96003 0.97326 1.23600 1.00831 1.01856 0.92594 1.21525 0.86725 0.96740 0.88719 1.42769 1.29622 1.33413 1.31949 1.19153 1.08548 1.08604 1.01353 0.89158 1.24690 0.98280 0.98721 0.97474 1.69703 1.27848 1.40969 1.19603 0.86546 0.80123 0.83804 0.78052 1.21106 1.21725 1.20316 1.23236 0.93025 1.01095 0.99755 1.23177 1.00026 0.96533 0.97121 1.20833 0.99644 0.93902 0.97644 0.92384 0.92557 0.92628 0.91026 0.90945 0.86306 0.86125 0.86369 0.87984 0.87957 0.76648 0.86933 0.89754 0.90897 0.90409 0.92258 0.89956 0.80513 0.93070 0.91732 0.90273 0.90981 0.89795 0.86350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.89 37.16 0.37 -0.45 16 2 C -0.09 -0.59 6.06 -27.89 -0.17 -0.76 16 3 C -0.08 -0.70 5.13 -104.62 -0.54 -1.24 16 4 C -0.12 -1.00 9.70 -39.58 -0.38 -1.39 16 5 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 6 C -0.11 -0.99 9.70 -39.58 -0.38 -1.38 16 7 C -0.06 -0.56 4.37 -104.62 -0.46 -1.02 16 8 C -0.10 -0.73 5.83 -29.03 -0.17 -0.90 16 9 C 0.51 5.32 7.82 -10.99 -0.09 5.24 16 10 O -0.53 -7.99 15.63 5.56 0.09 -7.90 16 11 N -0.72 -6.30 5.35 -52.86 -0.28 -6.59 16 12 C 0.12 1.34 4.24 -66.95 -0.28 1.06 16 13 C -0.12 -1.46 7.64 -26.29 -0.20 -1.66 16 14 C -0.10 -1.33 1.11 -154.71 -0.17 -1.51 16 15 C -0.15 -2.36 7.64 -26.28 -0.20 -2.56 16 16 C 0.17 3.31 4.48 -66.95 -0.30 3.01 16 17 N -0.74 -17.44 5.20 -52.48 -0.27 -17.72 16 18 C -0.25 -6.97 10.45 -15.06 -0.16 -7.13 16 19 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 20 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 21 N -0.93 -29.38 13.97 55.49 0.78 -28.61 16 22 Si 0.88 22.14 27.74 -169.99 -4.71 17.42 16 23 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.28 -6.53 6.52 56.52 0.37 -6.17 16 26 C -0.13 -2.05 7.59 -26.28 -0.20 -2.25 16 27 C -0.13 -1.38 7.59 -26.28 -0.20 -1.58 16 28 C -0.10 -0.94 9.36 -39.58 -0.37 -1.31 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.44 8.09 -51.92 -0.42 0.02 16 33 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 34 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 36 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 37 H 0.10 0.48 8.08 -51.93 -0.42 0.06 16 38 H 0.10 0.50 8.09 -51.93 -0.42 0.08 16 39 H 0.40 2.30 8.73 -40.82 -0.36 1.94 16 40 H 0.11 1.46 7.47 -51.93 -0.39 1.08 16 41 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.08 1.62 8.10 -51.93 -0.42 1.20 16 46 H 0.36 8.40 5.78 -40.82 -0.24 8.16 16 47 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 48 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.08 1.23 8.12 -51.93 -0.42 0.81 16 50 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 51 H 0.08 0.77 8.11 -51.93 -0.42 0.34 16 52 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 423.33 15.07 6.38 6.38 Total: -1.00 -34.48 423.33 -11.44 -45.92 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -9.01 Total: 8.27 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -4.40 Total: -17.18 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: 0.22 Total: -52.91 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: 0.09 Total: -7.90 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.71 Total: 17.42 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -34.48 -11.44 -45.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964066443.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.446 kcal (2) G-P(sol) polarization free energy of solvation -34.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds