Wall clock time and date at job start Wed Apr 1 2020 03:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50707 * 109.46965 * 2 1 4 4 C 1.38248 * 120.00181 * 265.00303 * 3 2 1 5 5 C 1.38207 * 120.00430 * 179.97438 * 4 3 2 6 6 C 1.38263 * 119.99448 * 0.27666 * 5 4 3 7 7 C 1.38208 * 120.00204 * 359.52804 * 6 5 4 8 8 C 1.38213 * 119.99731 * 85.02266 * 3 2 1 9 9 C 1.50698 * 120.00049 * 0.02562 * 8 3 2 10 10 H 1.09002 * 115.55386 * 334.32897 * 9 8 3 11 11 C 1.53006 * 117.49778 * 188.62344 * 9 8 3 12 12 C 1.53000 * 117.49943 * 119.99951 * 9 8 3 13 13 H 1.08994 * 117.49969 * 0.02562 * 12 9 8 14 14 C 1.50697 * 117.50154 * 215.00109 * 12 9 8 15 15 O 1.21290 * 119.99806 * 0.02562 * 14 12 9 16 16 N 1.34775 * 120.00236 * 179.97438 * 14 12 9 17 17 C 1.46501 * 120.00072 * 179.97438 * 16 14 12 18 18 H 1.09005 * 109.47080 * 325.00494 * 17 16 14 19 19 C 1.53001 * 109.46998 * 84.99949 * 17 16 14 20 20 C 1.52997 * 109.47517 * 205.00087 * 17 16 14 21 21 C 1.53938 * 113.74351 * 161.82239 * 20 17 16 22 22 N 1.47818 * 86.03731 * 222.08669 * 21 20 17 23 23 C 1.36938 * 134.45421 * 204.65106 * 22 21 20 24 24 H 1.08002 * 119.99323 * 179.86753 * 23 22 21 25 25 C 1.38808 * 120.00435 * 359.86153 * 23 22 21 26 26 N 1.31623 * 119.99731 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00251 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47045 * 59.99799 * 27 25 23 29 29 H 1.48500 * 109.47209 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.46975 * 299.99690 * 27 25 23 31 31 C 1.47574 * 91.04814 * 24.55100 * 22 21 20 32 32 H 1.09000 * 109.46912 * 299.99829 * 1 2 3 33 33 H 1.08997 * 109.47077 * 60.00180 * 1 2 3 34 34 H 1.09003 * 109.46414 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.46912 * 240.00170 * 2 1 3 36 36 H 1.08997 * 109.47077 * 119.99820 * 2 1 3 37 37 H 1.08009 * 120.00034 * 359.97438 * 4 3 2 38 38 H 1.08001 * 120.00613 * 180.02562 * 5 4 3 39 39 H 1.07999 * 119.99944 * 179.72670 * 6 5 4 40 40 H 1.07995 * 120.00261 * 180.20805 * 7 6 5 41 41 H 1.08999 * 117.49959 * 359.97438 * 11 9 8 42 42 H 1.08997 * 117.49807 * 145.02353 * 11 9 8 43 43 H 0.96993 * 119.99962 * 359.97438 * 16 14 12 44 44 H 1.09009 * 109.47284 * 180.02562 * 19 17 16 45 45 H 1.09000 * 109.47561 * 300.06571 * 19 17 16 46 46 H 1.08996 * 109.47210 * 60.06693 * 19 17 16 47 47 H 1.09000 * 112.94206 * 293.42014 * 20 17 16 48 48 H 1.09000 * 113.77567 * 336.34694 * 21 20 17 49 49 H 1.09006 * 113.76887 * 107.74849 * 21 20 17 50 50 H 0.97001 * 119.99537 * 180.02562 * 26 25 23 51 51 H 1.09008 * 113.76982 * 221.15597 * 31 22 21 52 52 H 1.09000 * 113.87474 * 89.77160 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.3611 2.0379 -1.1927 5 6 2.8212 3.3411 -1.1928 6 6 2.9582 4.0259 0.0005 7 6 2.6258 3.4104 1.1925 8 6 2.1648 2.1070 1.1925 9 6 1.8074 1.4341 2.4927 10 1 1.0763 0.6289 2.4200 11 6 1.7809 2.3013 3.7530 12 6 2.9119 1.2927 3.5419 13 1 3.8969 1.6867 3.2920 14 6 2.9059 0.0509 4.3957 15 8 2.0466 -0.7902 4.2366 16 7 3.8558 -0.1256 5.3353 17 6 3.8496 -1.3325 6.1656 18 1 2.8203 -1.6311 6.3649 19 6 4.5746 -2.4613 5.4301 20 6 4.5626 -1.0453 7.4885 21 6 4.2430 -2.0628 8.5985 22 7 4.1580 -0.8959 9.5020 23 6 4.3122 -0.7138 10.8504 24 1 4.1964 0.2708 11.2790 25 6 4.6171 -1.7945 11.6664 26 7 4.7585 -2.9943 11.1440 27 14 4.8267 -1.5462 13.5059 28 1 3.5672 -1.0078 14.0794 29 1 5.1461 -2.8467 14.1478 30 1 5.9330 -0.5868 13.7530 31 6 3.8430 -0.0063 8.3675 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3632 -1.0277 -0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 2.2583 1.5015 -2.1245 38 1 3.0777 3.8233 -2.1246 39 1 3.3220 5.0427 0.0009 40 1 2.7296 3.9464 2.1243 41 1 2.0223 3.3583 3.6417 42 1 1.0322 2.0667 4.5096 43 1 4.5437 0.5465 5.4617 44 1 4.5696 -3.3595 6.0477 45 1 4.0674 -2.6653 4.4871 46 1 5.6041 -2.1633 5.2318 47 1 5.6280 -0.8520 7.3637 48 1 3.2941 -2.5809 8.4598 49 1 5.0681 -2.7375 8.8269 50 1 4.9713 -3.7496 11.7143 51 1 4.3494 0.9581 8.4115 52 1 2.7768 0.0825 8.1593 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970342532.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:15 Heat of formation + Delta-G solvation = 52.349701 kcal Electronic energy + Delta-G solvation = -29240.365592 eV Core-core repulsion = 25399.670828 eV Total energy + Delta-G solvation = -3840.694764 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.58814 -39.56485 -38.17038 -36.48067 -34.70627 -34.44600 -32.16299 -31.01805 -30.32998 -29.57414 -27.46929 -25.33408 -24.57178 -24.21244 -24.03123 -23.51360 -21.33168 -21.11453 -20.38848 -20.06623 -18.99302 -17.53510 -16.88901 -16.62720 -16.05865 -15.75541 -15.31665 -14.91567 -14.78108 -14.57298 -14.11537 -13.98813 -13.97231 -13.72709 -13.57479 -13.44953 -13.15347 -12.77419 -12.48055 -12.29479 -12.10716 -12.05090 -11.97549 -11.66748 -11.56705 -11.39424 -11.21745 -11.13010 -11.06924 -10.87165 -10.77576 -10.67649 -10.60936 -10.34894 -10.05038 -9.80992 -9.61415 -9.40512 -9.04549 -8.82524 -8.77278 -8.72408 -6.86691 -5.75876 -3.07987 1.02044 1.11680 2.56572 3.17997 3.39946 3.42940 3.43988 3.45354 3.85621 4.31494 4.46002 4.48173 4.53836 4.61668 4.68686 4.74261 4.90114 4.92827 4.99834 5.14662 5.15566 5.20507 5.25109 5.26829 5.33773 5.41653 5.46375 5.55633 5.63351 5.67320 5.71155 5.75341 5.76057 5.83424 5.83776 5.92079 6.02161 6.04823 6.09642 6.24090 6.26904 6.29428 6.37258 6.44101 6.46456 6.61190 6.64513 6.73353 6.83250 7.23170 7.37310 7.56435 7.68447 7.99135 8.36712 9.05548 9.71817 10.61248 11.41355 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.023522 B = 0.001931 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.085826 B =14495.073781 C =15036.481146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.069 4.069 4 C -0.118 4.118 5 C -0.122 4.122 6 C -0.124 4.124 7 C -0.117 4.117 8 C -0.049 4.049 9 C -0.087 4.087 10 H 0.130 0.870 11 C -0.145 4.145 12 C -0.176 4.176 13 H 0.123 0.877 14 C 0.541 3.459 15 O -0.543 6.543 16 N -0.713 5.713 17 C 0.151 3.849 18 H 0.087 0.913 19 C -0.158 4.158 20 C -0.147 4.147 21 C 0.176 3.824 22 N -0.613 5.613 23 C -0.223 4.223 24 H 0.078 0.922 25 C -0.009 4.009 26 N -0.922 5.922 27 Si 0.912 3.088 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.284 1.284 31 C 0.126 3.874 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.399 0.601 44 H 0.070 0.930 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.088 0.912 48 H 0.028 0.972 49 H 0.075 0.925 50 H 0.254 0.746 51 H 0.040 0.960 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.481 11.538 -26.193 28.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.069 4.069 4 C -0.136 4.136 5 C -0.140 4.140 6 C -0.142 4.142 7 C -0.135 4.135 8 C -0.049 4.049 9 C -0.106 4.106 10 H 0.148 0.852 11 C -0.182 4.182 12 C -0.197 4.197 13 H 0.141 0.859 14 C 0.327 3.673 15 O -0.421 6.421 16 N -0.363 5.363 17 C 0.046 3.954 18 H 0.105 0.895 19 C -0.216 4.216 20 C -0.167 4.167 21 C 0.050 3.950 22 N -0.339 5.339 23 C -0.351 4.351 24 H 0.096 0.904 25 C -0.205 4.205 26 N -0.569 5.569 27 Si 0.742 3.258 28 H -0.212 1.212 29 H -0.215 1.215 30 H -0.211 1.211 31 C 0.000 4.000 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.233 0.767 44 H 0.089 0.911 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.106 0.894 48 H 0.046 0.954 49 H 0.093 0.907 50 H 0.064 0.936 51 H 0.058 0.942 52 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -4.024 10.797 -25.932 28.376 hybrid contribution 0.496 0.495 1.103 1.307 sum -3.527 11.293 -24.828 27.503 Atomic orbital electron populations 1.21741 0.94565 1.01959 1.02062 1.20607 0.96397 0.92507 1.03305 1.19742 0.98492 0.96269 0.92363 1.21025 0.99978 0.95176 0.97394 1.21126 0.99997 0.94830 0.98059 1.21093 1.00614 0.99942 0.92508 1.21067 0.99509 0.94527 0.98399 1.18992 0.99400 0.93707 0.92826 1.21128 1.00518 1.01844 0.87077 0.85250 1.23135 0.99286 0.96362 0.99424 1.22368 0.96822 0.98140 1.02342 0.85922 1.19539 0.81240 0.86439 0.80079 1.90690 1.37627 1.44756 1.69039 1.46055 1.30342 1.23563 1.36323 1.21117 1.01026 0.83826 0.89424 0.89538 1.22107 1.00040 0.98894 1.00553 1.23848 0.99478 1.01520 0.91832 1.22228 0.98930 0.90616 0.83243 1.45985 1.81325 1.04411 1.02145 1.18972 1.41006 0.94261 0.80854 0.90384 1.24786 1.02311 0.95311 0.98110 1.69801 1.54234 0.98721 1.34140 0.86201 0.77948 0.76726 0.84886 1.21217 1.21541 1.21100 1.22521 0.96297 0.94041 0.87131 0.92294 0.92805 0.92211 0.91196 0.90136 0.86135 0.86232 0.86144 0.85812 0.87504 0.87592 0.76725 0.91118 0.92850 0.92799 0.89369 0.95446 0.90712 0.93578 0.94188 0.95079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.74 37.16 0.36 -0.82 16 2 C -0.09 -0.79 5.38 -27.88 -0.15 -0.94 16 3 C -0.07 -0.63 5.13 -104.62 -0.54 -1.17 16 4 C -0.12 -0.96 9.68 -39.59 -0.38 -1.35 16 5 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 6 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 7 C -0.12 -0.97 9.30 -39.59 -0.37 -1.34 16 8 C -0.05 -0.46 5.61 -104.63 -0.59 -1.05 16 9 C -0.09 -0.87 4.66 -91.77 -0.43 -1.30 16 10 H 0.13 1.48 5.47 -51.93 -0.28 1.20 16 11 C -0.14 -1.30 9.56 -26.72 -0.26 -1.55 16 12 C -0.18 -1.78 5.82 -91.77 -0.53 -2.31 16 13 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 14 C 0.54 7.30 7.58 -10.99 -0.08 7.21 16 15 O -0.54 -9.28 15.92 5.55 0.09 -9.19 16 16 N -0.71 -9.17 4.94 -53.80 -0.27 -9.43 16 17 C 0.15 2.32 2.29 -67.93 -0.16 2.17 16 18 H 0.09 1.55 7.48 -51.93 -0.39 1.16 16 19 C -0.16 -2.24 9.44 37.16 0.35 -1.89 16 20 C -0.15 -2.62 3.35 -89.70 -0.30 -2.92 16 21 C 0.18 4.08 6.98 -2.84 -0.02 4.06 16 22 N -0.61 -15.78 3.70 -177.70 -0.66 -16.44 16 23 C -0.22 -6.32 10.70 -15.06 -0.16 -6.48 16 24 H 0.08 2.13 7.83 -52.49 -0.41 1.71 16 25 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 26 N -0.92 -27.45 11.39 55.49 0.63 -26.82 16 27 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 30 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 31 C 0.13 2.55 8.38 -2.97 -0.02 2.52 16 32 H 0.06 0.51 7.18 -51.93 -0.37 0.14 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 36 H 0.08 0.82 6.94 -51.93 -0.36 0.46 16 37 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 38 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 39 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.12 0.84 6.02 -52.49 -0.32 0.52 16 41 H 0.11 0.74 6.18 -51.93 -0.32 0.42 16 42 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.40 4.20 8.60 -40.82 -0.35 3.85 16 44 H 0.07 1.03 8.09 -51.92 -0.42 0.61 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 48 H 0.03 0.66 8.03 -51.93 -0.42 0.25 16 49 H 0.07 1.91 7.16 -51.93 -0.37 1.54 16 50 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 51 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 52 H 0.03 0.64 8.10 -51.93 -0.42 0.22 16 LS Contribution 418.78 15.07 6.31 6.31 Total: -1.00 -33.05 418.78 -11.72 -44.77 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -8.64 Total: 3.73 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -4.17 Total: -10.16 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.29 Total: -52.69 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -33.05 -11.72 -44.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970342532.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.120 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds