Wall clock time and date at job start Wed Apr 1 2020 03:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46801 * 2 1 4 4 C 1.38255 * 120.00284 * 264.99739 * 3 2 1 5 5 C 1.38212 * 120.00300 * 179.97438 * 4 3 2 6 6 C 1.38260 * 119.99650 * 0.28729 * 5 4 3 7 7 C 1.38208 * 120.00078 * 359.52112 * 6 5 4 8 8 C 1.38216 * 119.99971 * 84.98273 * 3 2 1 9 9 C 1.50706 * 119.99818 * 359.97438 * 8 3 2 10 10 H 1.09000 * 115.54583 * 334.32598 * 9 8 3 11 11 C 1.53001 * 117.49547 * 188.62490 * 9 8 3 12 12 C 1.52995 * 117.49693 * 120.00515 * 9 8 3 13 13 H 1.09000 * 117.50141 * 359.97438 * 12 9 8 14 14 C 1.50707 * 117.49552 * 214.99839 * 12 9 8 15 15 O 1.21287 * 119.99844 * 0.02562 * 14 12 9 16 16 N 1.34771 * 120.00175 * 179.97438 * 14 12 9 17 17 C 1.46502 * 120.00095 * 180.02562 * 16 14 12 18 18 H 1.09000 * 109.46953 * 35.00139 * 17 16 14 19 19 C 1.52998 * 109.46815 * 274.99758 * 17 16 14 20 20 C 1.53002 * 109.46974 * 155.00109 * 17 16 14 21 21 C 1.53944 * 113.74224 * 276.67172 * 20 17 16 22 22 N 1.47578 * 86.11683 * 222.05137 * 21 20 17 23 23 C 1.36940 * 134.49134 * 204.64235 * 22 21 20 24 24 H 1.08005 * 120.00074 * 179.97438 * 23 22 21 25 25 C 1.38815 * 119.99978 * 359.97438 * 23 22 21 26 26 N 1.31620 * 119.99728 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 119.99871 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47240 * 60.00037 * 27 25 23 29 29 H 1.48499 * 109.47071 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.47119 * 300.00125 * 27 25 23 31 31 C 1.47581 * 91.01886 * 24.63833 * 22 21 20 32 32 H 1.08996 * 109.47228 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46789 * 299.99694 * 1 2 3 34 34 H 1.08994 * 109.47200 * 60.00030 * 1 2 3 35 35 H 1.08999 * 109.46789 * 240.00306 * 2 1 3 36 36 H 1.08994 * 109.47200 * 119.99970 * 2 1 3 37 37 H 1.07999 * 119.99759 * 359.97438 * 4 3 2 38 38 H 1.08002 * 119.99812 * 180.02562 * 5 4 3 39 39 H 1.08004 * 119.99616 * 179.72197 * 6 5 4 40 40 H 1.07999 * 119.99916 * 180.23498 * 7 6 5 41 41 H 1.09005 * 117.49949 * 359.97438 * 11 9 8 42 42 H 1.08998 * 117.49955 * 145.02060 * 11 9 8 43 43 H 0.97004 * 119.99956 * 0.02562 * 16 14 12 44 44 H 1.09006 * 109.47156 * 60.00352 * 19 17 16 45 45 H 1.09003 * 109.47192 * 179.97438 * 19 17 16 46 46 H 1.09000 * 109.47671 * 299.99942 * 19 17 16 47 47 H 1.09003 * 112.94662 * 48.41116 * 20 17 16 48 48 H 1.08998 * 113.76949 * 336.35174 * 21 20 17 49 49 H 1.09000 * 113.76817 * 107.74949 * 21 20 17 50 50 H 0.96997 * 119.99542 * 179.97438 * 26 25 23 51 51 H 1.08999 * 113.77218 * 221.05965 * 31 22 21 52 52 H 1.08999 * 113.76506 * 89.65618 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0379 -1.1927 5 6 2.8213 3.3411 -1.1928 6 6 2.9584 4.0258 0.0005 7 6 2.6259 3.4104 1.1925 8 6 2.1639 2.1073 1.1924 9 6 1.8046 1.4350 2.4925 10 1 1.0730 0.6304 2.4191 11 6 1.7773 2.3027 3.7524 12 6 2.9079 1.2933 3.5429 13 1 3.8937 1.6859 3.2936 14 6 2.8999 0.0517 4.3972 15 8 2.0402 -0.7887 4.2374 16 7 3.8486 -0.1251 5.3379 17 6 3.8412 -1.3323 6.1679 18 1 3.4935 -2.1785 5.5753 19 6 2.9051 -1.1256 7.3603 20 6 5.2577 -1.6119 6.6741 21 6 6.1371 -2.3738 5.6660 22 7 6.6058 -3.1614 6.8228 23 6 7.7391 -3.8784 7.0997 24 1 7.8421 -4.3794 8.0510 25 6 8.7554 -3.9614 6.1579 26 7 8.6300 -3.3504 4.9988 27 14 10.3010 -4.9401 6.5354 28 1 9.9385 -6.3561 6.7977 29 1 11.2257 -4.8721 5.3754 30 1 10.9678 -4.3698 7.7335 31 6 5.3627 -2.8657 7.5612 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8899 37 1 2.2585 1.5014 -2.1244 38 1 3.0778 3.8232 -2.1246 39 1 3.3222 5.0427 0.0009 40 1 2.7294 3.9465 2.1243 41 1 2.0197 3.3596 3.6410 42 1 1.0276 2.0689 4.5083 43 1 4.5364 0.5469 5.4654 44 1 1.8959 -0.9264 6.9996 45 1 2.8991 -2.0239 7.9776 46 1 3.2528 -0.2794 7.9528 47 1 5.7382 -0.7313 7.1005 48 1 5.5695 -2.9553 4.9396 49 1 6.9133 -1.7604 5.2086 50 1 9.3403 -3.4081 4.3409 51 1 5.5206 -2.6451 8.6169 52 1 4.5676 -3.5918 7.3914 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970342533.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:21 Heat of formation + Delta-G solvation = 52.876053 kcal Electronic energy + Delta-G solvation = -29389.280142 eV Core-core repulsion = 25548.608202 eV Total energy + Delta-G solvation = -3840.671940 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -40.52922 -39.51082 -38.18733 -36.44528 -34.69400 -34.36311 -32.19253 -30.93857 -30.26243 -29.49835 -27.50495 -25.34829 -24.53165 -24.13206 -23.96074 -23.51312 -21.29162 -21.11725 -20.33560 -20.04977 -18.92309 -17.45948 -16.84997 -16.58361 -16.07857 -15.71367 -15.20872 -14.91087 -14.86740 -14.38170 -14.21996 -14.01929 -13.83063 -13.67019 -13.50142 -13.37063 -13.01931 -12.69323 -12.48483 -12.37013 -12.11604 -12.00626 -11.93810 -11.65738 -11.57505 -11.33383 -11.28036 -11.05422 -11.00598 -10.89056 -10.74282 -10.68128 -10.56724 -10.35228 -9.97214 -9.74171 -9.65391 -9.38552 -8.96503 -8.78085 -8.77282 -8.64130 -6.85999 -5.75005 -3.07382 1.10111 1.20117 2.60579 3.24085 3.40262 3.44195 3.45634 3.48102 3.90005 4.37105 4.46433 4.54208 4.61411 4.67261 4.73316 4.81111 4.94981 5.01374 5.05085 5.17307 5.23328 5.29794 5.30477 5.31835 5.33519 5.42448 5.47579 5.55113 5.67312 5.69874 5.74834 5.81546 5.82892 5.84165 5.88928 5.95996 5.99707 6.05073 6.12577 6.25979 6.32035 6.34256 6.37445 6.42119 6.52221 6.60567 6.68588 6.81552 6.83904 7.25111 7.38101 7.57550 7.72083 8.00044 8.40671 9.06358 9.72491 10.62112 11.41890 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012269 B = 0.002321 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2281.685497 B =12058.731822 C =13114.768077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.067 4.067 4 C -0.117 4.117 5 C -0.122 4.122 6 C -0.124 4.124 7 C -0.117 4.117 8 C -0.050 4.050 9 C -0.085 4.085 10 H 0.130 0.870 11 C -0.146 4.146 12 C -0.175 4.175 13 H 0.125 0.875 14 C 0.543 3.457 15 O -0.545 6.545 16 N -0.712 5.712 17 C 0.150 3.850 18 H 0.087 0.913 19 C -0.157 4.157 20 C -0.146 4.146 21 C 0.171 3.829 22 N -0.613 5.613 23 C -0.224 4.224 24 H 0.079 0.921 25 C -0.008 4.008 26 N -0.921 5.921 27 Si 0.912 3.088 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.284 1.284 31 C 0.130 3.870 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.400 0.600 44 H 0.052 0.948 45 H 0.067 0.933 46 H 0.053 0.947 47 H 0.088 0.912 48 H 0.025 0.975 49 H 0.071 0.929 50 H 0.254 0.746 51 H 0.044 0.956 52 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.229 16.582 -8.286 24.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.129 4.129 3 C -0.067 4.067 4 C -0.135 4.135 5 C -0.140 4.140 6 C -0.142 4.142 7 C -0.135 4.135 8 C -0.050 4.050 9 C -0.104 4.104 10 H 0.147 0.853 11 C -0.183 4.183 12 C -0.197 4.197 13 H 0.143 0.857 14 C 0.329 3.671 15 O -0.422 6.422 16 N -0.362 5.362 17 C 0.046 3.954 18 H 0.105 0.895 19 C -0.216 4.216 20 C -0.166 4.166 21 C 0.046 3.954 22 N -0.339 5.339 23 C -0.351 4.351 24 H 0.097 0.903 25 C -0.205 4.205 26 N -0.568 5.568 27 Si 0.742 3.258 28 H -0.212 1.212 29 H -0.216 1.216 30 H -0.211 1.211 31 C 0.003 3.997 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.234 0.766 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.072 0.928 47 H 0.106 0.894 48 H 0.043 0.957 49 H 0.089 0.911 50 H 0.064 0.936 51 H 0.062 0.938 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -16.497 15.809 -8.454 24.362 hybrid contribution 1.387 -0.260 0.117 1.416 sum -15.109 15.549 -8.337 23.228 Atomic orbital electron populations 1.21733 0.94645 1.01908 1.01935 1.20615 0.96284 0.92515 1.03529 1.19746 0.98391 0.96224 0.92366 1.21034 0.99893 0.95144 0.97437 1.21126 0.99931 0.94845 0.98068 1.21080 1.00644 0.99948 0.92520 1.21040 0.99600 0.94536 0.98333 1.18982 0.99519 0.93710 0.92814 1.21113 1.00516 1.01671 0.87066 0.85264 1.23113 0.99305 0.96366 0.99563 1.22382 0.96975 0.97983 1.02314 0.85721 1.19525 0.81364 0.86499 0.79752 1.90679 1.37613 1.44540 1.69417 1.46018 1.30273 1.23495 1.36375 1.21098 0.96118 0.87128 0.91083 0.89521 1.22128 0.99258 1.02134 0.98067 1.23819 0.93120 0.98798 1.00901 1.22253 0.92889 0.90538 0.89742 1.45947 1.13363 1.60092 1.14476 1.18979 0.91719 1.24422 1.00004 0.90342 1.24788 0.98673 1.00909 0.96126 1.69810 1.33480 1.46901 1.06637 0.86206 0.82765 0.79794 0.77028 1.21197 1.21561 1.21102 1.22499 0.89504 0.92217 0.95464 0.92229 0.92405 0.92834 0.91083 0.90037 0.86098 0.86226 0.86169 0.85890 0.87560 0.87819 0.76585 0.92868 0.91451 0.92753 0.89422 0.95706 0.91070 0.93634 0.93782 0.94783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.74 37.16 0.36 -0.92 16 2 C -0.09 -0.93 5.38 -27.88 -0.15 -1.08 16 3 C -0.07 -0.70 5.13 -104.62 -0.54 -1.24 16 4 C -0.12 -1.10 9.68 -39.58 -0.38 -1.49 16 5 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 6 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 7 C -0.12 -1.07 9.30 -39.59 -0.37 -1.44 16 8 C -0.05 -0.52 5.61 -104.62 -0.59 -1.11 16 9 C -0.09 -0.91 4.66 -91.77 -0.43 -1.33 16 10 H 0.13 1.55 5.46 -51.93 -0.28 1.26 16 11 C -0.15 -1.29 9.56 -26.73 -0.26 -1.54 16 12 C -0.18 -1.91 5.82 -91.77 -0.53 -2.45 16 13 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 14 C 0.54 7.68 7.58 -10.98 -0.08 7.60 16 15 O -0.54 -9.54 15.92 5.55 0.09 -9.45 16 16 N -0.71 -9.64 5.08 -53.80 -0.27 -9.92 16 17 C 0.15 2.33 2.42 -67.93 -0.16 2.16 16 18 H 0.09 1.57 7.37 -51.93 -0.38 1.19 16 19 C -0.16 -2.10 9.29 37.16 0.35 -1.75 16 20 C -0.15 -2.63 3.50 -89.69 -0.31 -2.94 16 21 C 0.17 4.03 7.07 -2.98 -0.02 4.00 16 22 N -0.61 -15.85 3.70 -177.92 -0.66 -16.51 16 23 C -0.22 -6.35 10.70 -15.06 -0.16 -6.51 16 24 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 25 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 26 N -0.92 -27.57 11.38 55.49 0.63 -26.94 16 27 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 29 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 30 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 31 C 0.13 2.62 7.56 -2.97 -0.02 2.60 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.53 7.17 -51.93 -0.37 0.16 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.65 8.05 -51.93 -0.42 0.23 16 36 H 0.08 0.96 6.94 -51.93 -0.36 0.60 16 37 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 38 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 40 H 0.12 0.90 6.02 -52.49 -0.32 0.59 16 41 H 0.11 0.72 6.18 -51.93 -0.32 0.40 16 42 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.40 4.57 8.60 -40.82 -0.35 4.22 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.07 0.87 7.43 -51.93 -0.39 0.49 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 48 H 0.03 0.62 7.96 -51.93 -0.41 0.21 16 49 H 0.07 1.84 7.15 -51.93 -0.37 1.47 16 50 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 51 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 52 H 0.03 0.67 8.06 -51.93 -0.42 0.26 16 LS Contribution 417.40 15.07 6.29 6.29 Total: -1.00 -33.35 417.40 -11.73 -45.08 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -8.59 Total: 4.84 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -4.19 Total: -10.69 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: -0.30 Total: -53.37 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.45 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.35 -11.73 -45.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970342533.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.956 kcal (2) G-P(sol) polarization free energy of solvation -33.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds