Wall clock time and date at job start Wed Apr 1 2020 01:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38253 * 120.00596 * 2 1 4 4 C 1.38214 * 120.00308 * 180.27490 * 3 2 1 5 5 C 1.38256 * 120.00052 * 359.74398 * 4 3 2 6 6 C 1.50698 * 120.00139 * 179.97438 * 5 4 3 7 7 H 1.08999 * 115.54914 * 154.35659 * 6 5 4 8 8 C 1.52998 * 117.49688 * 8.63985 * 6 5 4 9 9 C 1.53000 * 60.00114 * 252.51068 * 8 6 5 10 10 H 1.09009 * 117.49553 * 107.48565 * 9 8 6 11 11 C 1.50697 * 117.52340 * 252.51944 * 9 8 6 12 12 O 1.21279 * 119.99571 * 68.62835 * 11 9 8 13 13 N 1.34773 * 119.99990 * 248.62857 * 11 9 8 14 14 C 1.46503 * 120.00105 * 179.97438 * 13 11 9 15 15 H 1.09001 * 109.46793 * 35.00148 * 14 13 11 16 16 C 1.52996 * 109.47253 * 275.00346 * 14 13 11 17 17 C 1.52994 * 109.47196 * 155.00161 * 14 13 11 18 18 C 1.53947 * 113.74327 * 278.74252 * 17 14 13 19 19 N 1.47813 * 86.03821 * 222.08627 * 18 17 14 20 20 C 1.36938 * 134.45435 * 204.64761 * 19 18 17 21 21 H 1.07998 * 120.00088 * 179.86629 * 20 19 18 22 22 C 1.38816 * 120.00065 * 359.86171 * 20 19 18 23 23 N 1.31618 * 119.99821 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99832 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.46906 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46799 * 120.00379 * 24 22 20 27 27 H 1.48497 * 109.47018 * 239.99866 * 24 22 20 28 28 C 1.47575 * 91.05142 * 24.54750 * 19 18 17 29 29 C 1.38216 * 119.99493 * 0.02562 * 5 4 3 30 30 C 1.38218 * 119.99818 * 179.76321 * 2 1 3 31 31 C 1.50703 * 119.99968 * 0.02562 * 30 2 1 32 32 H 1.08995 * 109.47734 * 270.23743 * 1 2 3 33 33 H 1.09002 * 109.46829 * 30.23687 * 1 2 3 34 34 H 1.09000 * 109.47496 * 150.23001 * 1 2 3 35 35 H 1.08000 * 119.99553 * 359.97438 * 3 2 1 36 36 H 1.08001 * 120.00174 * 179.72549 * 4 3 2 37 37 H 1.08991 * 117.50188 * 0.02562 * 8 6 5 38 38 H 1.09001 * 117.49647 * 145.02240 * 8 6 5 39 39 H 0.97001 * 120.00189 * 0.02562 * 13 11 9 40 40 H 1.09003 * 109.47114 * 179.97438 * 16 14 13 41 41 H 1.08998 * 109.47294 * 300.00095 * 16 14 13 42 42 H 1.09005 * 109.47357 * 60.00245 * 16 14 13 43 43 H 1.09004 * 112.94730 * 50.33580 * 17 14 13 44 44 H 1.09005 * 113.77129 * 336.35282 * 18 17 14 45 45 H 1.08999 * 113.76764 * 107.74394 * 18 17 14 46 46 H 0.97002 * 119.99960 * 179.97438 * 23 22 20 47 47 H 1.08998 * 113.77142 * 221.15466 * 28 19 18 48 48 H 1.09005 * 113.76836 * 89.75384 * 28 19 18 49 49 H 1.08009 * 119.99396 * 179.97438 * 29 5 4 50 50 H 1.09002 * 109.47152 * 269.72462 * 31 30 2 51 51 H 1.09001 * 109.46980 * 149.72562 * 31 30 2 52 52 H 1.09004 * 109.47113 * 29.72543 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5805 1.1972 -0.0057 5 6 4.2717 -0.0002 -0.0061 6 6 5.7787 -0.0003 -0.0130 7 1 6.2507 -0.8859 0.4125 8 6 6.4861 1.3419 0.1846 9 6 6.4798 0.6760 -1.1929 10 1 5.8509 1.1209 -1.9641 11 6 7.7700 0.0667 -1.6777 12 8 8.2147 -0.9228 -1.1355 13 7 8.4297 0.6215 -2.7137 14 6 9.6844 0.0296 -3.1847 15 1 9.6344 -1.0547 -3.0851 16 6 10.8472 0.5656 -2.3473 17 6 9.9019 0.3972 -4.6538 18 6 9.1189 -0.4911 -5.6376 19 7 10.3497 -0.4925 -6.4561 20 6 10.6162 -0.6748 -7.7869 21 1 11.6335 -0.6236 -8.1458 22 6 9.5789 -0.9255 -8.6745 23 7 8.3390 -0.9875 -8.2372 24 14 9.9425 -1.1735 -10.4900 25 1 11.4043 -1.0551 -10.7226 26 1 9.4829 -2.5227 -10.9070 27 1 9.2292 -0.1405 -11.2833 28 6 11.1751 -0.2161 -5.2644 29 6 3.5805 -1.1971 -0.0013 30 6 2.1980 -1.1970 0.0049 31 6 1.4444 -2.5021 0.0098 32 1 -0.3634 0.0043 1.0276 33 1 -0.3633 0.8879 -0.5175 34 1 -0.3634 -0.8920 -0.5102 35 1 1.6584 2.1326 -0.0004 36 1 4.1205 2.1324 -0.0102 37 1 5.8615 2.2248 0.3200 38 1 7.4237 1.3396 0.7405 39 1 8.0742 1.4132 -3.1471 40 1 11.7806 0.1248 -2.6975 41 1 10.8971 1.6499 -2.4469 42 1 10.6923 0.3036 -1.3006 43 1 9.7938 1.4649 -4.8452 44 1 8.8584 -1.4697 -5.2342 45 1 8.2762 0.0136 -6.1101 46 1 7.6141 -1.1623 -8.8575 47 1 11.9710 0.5077 -5.4394 48 1 11.5200 -1.1137 -4.7511 49 1 4.1205 -2.1325 -0.0021 50 1 1.2666 -2.8152 1.0386 51 1 2.0316 -3.2625 -0.5051 52 1 0.4901 -2.3725 -0.5007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970548507.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:41 Heat of formation + Delta-G solvation = 52.371660 kcal Electronic energy + Delta-G solvation = -28863.963725 eV Core-core repulsion = 25023.269913 eV Total energy + Delta-G solvation = -3840.693812 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.44782 -39.59101 -38.24054 -36.76057 -34.70189 -33.05830 -32.33888 -32.15927 -30.42270 -28.05146 -27.50801 -26.72585 -25.14202 -24.33829 -23.55634 -22.97746 -22.26580 -21.09595 -20.18110 -19.57173 -18.90943 -17.43145 -16.79618 -16.39330 -16.00766 -15.82566 -15.03756 -14.88869 -14.74623 -14.58331 -14.38591 -13.94352 -13.80172 -13.52252 -13.34313 -13.06558 -13.01166 -12.98353 -12.50998 -12.43091 -12.33601 -12.17445 -12.10722 -11.97957 -11.65016 -11.32987 -11.29318 -11.26543 -11.08524 -10.91170 -10.74955 -10.67136 -10.56941 -10.33216 -9.95008 -9.73256 -9.64180 -9.38360 -8.90895 -8.78971 -8.76432 -8.50535 -6.85772 -5.75204 -3.07391 1.07791 1.21216 2.61267 3.23588 3.39377 3.44472 3.46210 3.47296 3.90114 4.35283 4.46203 4.53210 4.62806 4.64223 4.73364 4.78818 4.92169 4.96136 5.05077 5.11408 5.18321 5.24092 5.29865 5.31287 5.36373 5.41236 5.44926 5.54954 5.57879 5.58231 5.62896 5.67731 5.76603 5.82547 5.85651 5.96260 5.96426 6.00812 6.05330 6.26376 6.27486 6.37571 6.42350 6.44214 6.47977 6.61156 6.69294 6.83439 6.84166 7.25469 7.38341 7.57785 7.73060 7.99637 8.41735 9.06190 9.72444 10.61963 11.41880 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011250 B = 0.002190 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.394725 B =12780.375970 C =14524.915905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.093 4.093 3 C -0.115 4.115 4 C -0.121 4.121 5 C -0.052 4.052 6 C -0.083 4.083 7 H 0.126 0.874 8 C -0.146 4.146 9 C -0.175 4.175 10 H 0.125 0.875 11 C 0.543 3.457 12 O -0.545 6.545 13 N -0.712 5.712 14 C 0.150 3.850 15 H 0.086 0.914 16 C -0.158 4.158 17 C -0.146 4.146 18 C 0.171 3.829 19 N -0.613 5.613 20 C -0.222 4.222 21 H 0.080 0.920 22 C -0.010 4.010 23 N -0.921 5.921 24 Si 0.911 3.089 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.290 1.290 28 C 0.130 3.870 29 C -0.105 4.105 30 C -0.085 4.085 31 C -0.118 4.118 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.400 0.600 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.088 0.912 44 H 0.026 0.974 45 H 0.071 0.929 46 H 0.252 0.748 47 H 0.044 0.956 48 H 0.035 0.965 49 H 0.124 0.876 50 H 0.069 0.931 51 H 0.067 0.933 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.662 6.146 21.215 25.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.093 4.093 3 C -0.133 4.133 4 C -0.139 4.139 5 C -0.052 4.052 6 C -0.101 4.101 7 H 0.144 0.856 8 C -0.183 4.183 9 C -0.197 4.197 10 H 0.143 0.857 11 C 0.329 3.671 12 O -0.423 6.423 13 N -0.362 5.362 14 C 0.046 3.954 15 H 0.105 0.895 16 C -0.216 4.216 17 C -0.166 4.166 18 C 0.046 3.954 19 N -0.339 5.339 20 C -0.349 4.349 21 H 0.098 0.902 22 C -0.206 4.206 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.217 1.217 28 C 0.003 3.997 29 C -0.123 4.123 30 C -0.085 4.085 31 C -0.175 4.175 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.234 0.766 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.106 0.894 44 H 0.043 0.957 45 H 0.089 0.911 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.052 0.948 49 H 0.142 0.858 50 H 0.088 0.912 51 H 0.086 0.914 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.392 5.360 21.224 25.155 hybrid contribution 0.026 0.166 -1.374 1.384 sum -12.365 5.526 19.850 24.031 Atomic orbital electron populations 1.20848 0.91425 1.02860 1.02180 1.19757 0.95928 0.92719 1.00901 1.20955 0.94012 0.97389 1.00904 1.21010 0.94114 0.97625 1.01178 1.19085 0.92892 0.93304 0.99944 1.21042 0.90430 0.98152 1.00516 0.85613 1.23104 1.02795 0.96236 0.96142 1.22382 0.97831 1.05926 0.93514 0.85694 1.19525 0.84226 0.83465 0.79896 1.90677 1.68610 1.25774 1.57271 1.46010 1.24847 1.31730 1.33576 1.21093 0.82150 0.98808 0.93388 0.89546 1.22126 0.98522 1.01054 0.99889 1.23814 1.00734 1.00907 0.91187 1.22289 0.91817 0.94562 0.86759 1.46011 1.02941 1.83730 1.01257 1.19076 0.93295 1.41703 0.80864 0.90228 1.24792 0.95344 1.02328 0.98137 1.69831 0.98174 1.55439 1.33372 0.86055 0.77404 0.77430 0.84931 1.20469 1.21767 1.21724 1.22492 0.93237 0.96145 0.87786 1.20879 0.93308 0.97794 1.00288 1.19739 0.93546 0.94952 1.00217 1.20871 1.00167 0.94145 1.02292 0.91311 0.91684 0.91161 0.86123 0.85900 0.87541 0.87825 0.76564 0.91461 0.92744 0.92863 0.89420 0.95659 0.91062 0.93745 0.93764 0.94778 0.85813 0.91197 0.91411 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 9.60 36.00 0.35 -0.43 16 2 C -0.09 -0.85 5.88 -104.63 -0.62 -1.47 16 3 C -0.11 -1.03 9.70 -39.58 -0.38 -1.41 16 4 C -0.12 -1.14 9.30 -39.58 -0.37 -1.51 16 5 C -0.05 -0.56 5.61 -104.62 -0.59 -1.14 16 6 C -0.08 -0.90 5.55 -91.77 -0.51 -1.41 16 7 H 0.13 1.53 7.67 -51.93 -0.40 1.13 16 8 C -0.15 -1.31 9.56 -26.73 -0.26 -1.56 16 9 C -0.18 -1.95 5.82 -91.77 -0.53 -2.49 16 10 H 0.13 1.26 8.14 -51.92 -0.42 0.84 16 11 C 0.54 7.86 7.58 -10.99 -0.08 7.78 16 12 O -0.55 -9.81 15.92 5.56 0.09 -9.72 16 13 N -0.71 -9.81 5.08 -53.81 -0.27 -10.08 16 14 C 0.15 2.35 2.38 -67.93 -0.16 2.19 16 15 H 0.09 1.58 7.42 -51.93 -0.39 1.20 16 16 C -0.16 -2.12 9.31 37.16 0.35 -1.77 16 17 C -0.15 -2.64 3.47 -89.69 -0.31 -2.95 16 18 C 0.17 4.04 7.08 -2.84 -0.02 4.02 16 19 N -0.61 -15.91 3.70 -177.68 -0.66 -16.56 16 20 C -0.22 -6.31 10.70 -15.06 -0.16 -6.47 16 21 H 0.08 2.19 7.83 -52.49 -0.41 1.77 16 22 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 23 N -0.92 -27.64 11.39 55.49 0.63 -27.01 16 24 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 C 0.13 2.64 7.64 -2.97 -0.02 2.61 16 29 C -0.10 -1.12 9.39 -39.58 -0.37 -1.50 16 30 C -0.08 -0.82 5.88 -104.62 -0.62 -1.44 16 31 C -0.12 -0.89 9.61 36.01 0.35 -0.54 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 34 H 0.07 0.42 5.94 -51.93 -0.31 0.11 16 35 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 36 H 0.12 0.93 6.02 -52.49 -0.32 0.61 16 37 H 0.11 0.74 6.18 -51.93 -0.32 0.42 16 38 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.40 4.66 8.60 -40.82 -0.35 4.30 16 40 H 0.07 0.88 7.52 -51.93 -0.39 0.49 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.03 0.64 7.99 -51.93 -0.41 0.22 16 45 H 0.07 1.85 7.16 -51.93 -0.37 1.48 16 46 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.03 0.68 8.10 -51.93 -0.42 0.26 16 49 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 50 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 51 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 52 H 0.07 0.45 5.94 -51.93 -0.31 0.15 16 LS Contribution 418.64 15.07 6.31 6.31 Total: -1.00 -33.91 418.64 -11.58 -45.49 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -8.60 Total: 4.09 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -4.06 Total: -9.87 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.30 Total: -53.65 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -33.91 -11.58 -45.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970548507.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.861 kcal (2) G-P(sol) polarization free energy of solvation -33.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds