Wall clock time and date at job start Wed Apr 1 2020 01:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38253 * 120.00596 * 2 1 4 4 C 1.38214 * 120.00308 * 180.27490 * 3 2 1 5 5 C 1.38256 * 120.00052 * 359.74398 * 4 3 2 6 6 C 1.50698 * 120.00139 * 179.97438 * 5 4 3 7 7 H 1.08999 * 115.54914 * 154.35659 * 6 5 4 8 8 C 1.52998 * 117.49688 * 8.63985 * 6 5 4 9 9 C 1.53000 * 60.00114 * 252.51068 * 8 6 5 10 10 H 1.09009 * 117.49553 * 107.48565 * 9 8 6 11 11 C 1.50697 * 117.52340 * 252.51944 * 9 8 6 12 12 O 1.21279 * 119.99571 * 68.62835 * 11 9 8 13 13 N 1.34773 * 119.99990 * 248.62857 * 11 9 8 14 14 C 1.46503 * 120.00105 * 179.97438 * 13 11 9 15 15 H 1.09001 * 109.46793 * 35.00148 * 14 13 11 16 16 C 1.52996 * 109.47253 * 275.00346 * 14 13 11 17 17 C 1.52994 * 109.47196 * 155.00161 * 14 13 11 18 18 C 1.53947 * 113.74327 * 278.74252 * 17 14 13 19 19 N 1.47813 * 86.03821 * 222.08627 * 18 17 14 20 20 C 1.36938 * 134.45435 * 204.64761 * 19 18 17 21 21 H 1.07998 * 120.00088 * 179.86629 * 20 19 18 22 22 C 1.38816 * 120.00065 * 359.86171 * 20 19 18 23 23 N 1.31618 * 119.99821 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99832 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.46906 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46799 * 120.00379 * 24 22 20 27 27 H 1.48497 * 109.47018 * 239.99866 * 24 22 20 28 28 C 1.47575 * 91.05142 * 24.54750 * 19 18 17 29 29 C 1.38216 * 119.99493 * 0.02562 * 5 4 3 30 30 C 1.38218 * 119.99818 * 179.76321 * 2 1 3 31 31 C 1.50703 * 119.99968 * 0.02562 * 30 2 1 32 32 H 1.08995 * 109.47734 * 270.23743 * 1 2 3 33 33 H 1.09002 * 109.46829 * 30.23687 * 1 2 3 34 34 H 1.09000 * 109.47496 * 150.23001 * 1 2 3 35 35 H 1.08000 * 119.99553 * 359.97438 * 3 2 1 36 36 H 1.08001 * 120.00174 * 179.72549 * 4 3 2 37 37 H 1.08991 * 117.50188 * 0.02562 * 8 6 5 38 38 H 1.09001 * 117.49647 * 145.02240 * 8 6 5 39 39 H 0.97001 * 120.00189 * 0.02562 * 13 11 9 40 40 H 1.09003 * 109.47114 * 179.97438 * 16 14 13 41 41 H 1.08998 * 109.47294 * 300.00095 * 16 14 13 42 42 H 1.09005 * 109.47357 * 60.00245 * 16 14 13 43 43 H 1.09004 * 112.94730 * 50.33580 * 17 14 13 44 44 H 1.09005 * 113.77129 * 336.35282 * 18 17 14 45 45 H 1.08999 * 113.76764 * 107.74394 * 18 17 14 46 46 H 0.97002 * 119.99960 * 179.97438 * 23 22 20 47 47 H 1.08998 * 113.77142 * 221.15466 * 28 19 18 48 48 H 1.09005 * 113.76836 * 89.75384 * 28 19 18 49 49 H 1.08009 * 119.99396 * 179.97438 * 29 5 4 50 50 H 1.09002 * 109.47152 * 269.72462 * 31 30 2 51 51 H 1.09001 * 109.46980 * 149.72562 * 31 30 2 52 52 H 1.09004 * 109.47113 * 29.72543 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5805 1.1972 -0.0057 5 6 4.2717 -0.0002 -0.0061 6 6 5.7787 -0.0003 -0.0130 7 1 6.2507 -0.8859 0.4125 8 6 6.4861 1.3419 0.1846 9 6 6.4798 0.6760 -1.1929 10 1 5.8509 1.1209 -1.9641 11 6 7.7700 0.0667 -1.6777 12 8 8.2147 -0.9228 -1.1355 13 7 8.4297 0.6215 -2.7137 14 6 9.6844 0.0296 -3.1847 15 1 9.6344 -1.0547 -3.0851 16 6 10.8472 0.5656 -2.3473 17 6 9.9019 0.3972 -4.6538 18 6 9.1189 -0.4911 -5.6376 19 7 10.3497 -0.4925 -6.4561 20 6 10.6162 -0.6748 -7.7869 21 1 11.6335 -0.6236 -8.1458 22 6 9.5789 -0.9255 -8.6745 23 7 8.3390 -0.9875 -8.2372 24 14 9.9425 -1.1735 -10.4900 25 1 11.4043 -1.0551 -10.7226 26 1 9.4829 -2.5227 -10.9070 27 1 9.2292 -0.1405 -11.2833 28 6 11.1751 -0.2161 -5.2644 29 6 3.5805 -1.1971 -0.0013 30 6 2.1980 -1.1970 0.0049 31 6 1.4444 -2.5021 0.0098 32 1 -0.3634 0.0043 1.0276 33 1 -0.3633 0.8879 -0.5175 34 1 -0.3634 -0.8920 -0.5102 35 1 1.6584 2.1326 -0.0004 36 1 4.1205 2.1324 -0.0102 37 1 5.8615 2.2248 0.3200 38 1 7.4237 1.3396 0.7405 39 1 8.0742 1.4132 -3.1471 40 1 11.7806 0.1248 -2.6975 41 1 10.8971 1.6499 -2.4469 42 1 10.6923 0.3036 -1.3006 43 1 9.7938 1.4649 -4.8452 44 1 8.8584 -1.4697 -5.2342 45 1 8.2762 0.0136 -6.1101 46 1 7.6141 -1.1623 -8.8575 47 1 11.9710 0.5077 -5.4394 48 1 11.5200 -1.1137 -4.7511 49 1 4.1205 -2.1325 -0.0021 50 1 1.2666 -2.8152 1.0386 51 1 2.0316 -3.2625 -0.5051 52 1 0.4901 -2.3725 -0.5007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970548507.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:36:40 Heat of formation + Delta-G solvation = 33.819853 kcal Electronic energy + Delta-G solvation = -28864.768192 eV Core-core repulsion = 25023.269913 eV Total energy + Delta-G solvation = -3841.498279 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.42036 -40.59068 -39.74405 -37.73298 -36.10960 -34.18618 -33.73966 -32.99243 -31.78749 -29.37785 -28.67818 -27.44676 -26.68771 -25.80837 -25.03408 -23.70647 -22.98153 -22.57852 -21.40261 -20.56506 -20.17965 -18.78066 -18.44042 -17.51321 -17.03922 -16.91038 -16.61715 -15.97592 -15.78448 -15.70523 -15.58029 -15.11614 -14.87694 -14.79910 -14.54632 -14.09289 -14.03568 -13.69802 -13.59170 -13.44676 -13.31941 -13.25105 -13.11373 -13.03357 -12.92898 -12.75455 -12.72891 -12.67428 -12.51515 -11.99761 -11.94872 -11.79106 -11.76181 -11.53658 -11.43649 -11.37094 -11.26668 -10.91635 -10.80017 -10.02430 -9.62794 -9.22055 -8.93808 -7.91972 -5.25853 0.35531 0.49337 1.43872 1.45373 1.52758 1.55662 2.16160 2.45925 2.64807 3.07808 3.28613 3.36223 3.53251 3.69552 3.75230 3.87687 3.92388 3.96149 4.02494 4.13714 4.15566 4.24146 4.29718 4.36184 4.45607 4.49014 4.58193 4.69537 4.71942 4.73297 4.79063 4.81833 4.85905 4.87971 4.89794 4.96501 5.00953 5.03312 5.05056 5.09609 5.12784 5.24358 5.26700 5.32688 5.40677 5.48558 5.56252 5.57162 5.66077 5.71934 5.77945 5.91887 6.15672 6.61096 6.90136 7.28757 7.59271 8.55103 9.25000 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011250 B = 0.002190 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.394725 B =12780.375970 C =14524.915905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.102 4.102 3 C -0.120 4.120 4 C -0.125 4.125 5 C -0.065 4.065 6 C -0.092 4.092 7 H 0.103 0.897 8 C -0.117 4.117 9 C -0.181 4.181 10 H 0.139 0.861 11 C 0.539 3.461 12 O -0.587 6.587 13 N -0.706 5.706 14 C 0.159 3.841 15 H 0.055 0.945 16 C -0.148 4.148 17 C -0.108 4.108 18 C 0.168 3.832 19 N -0.645 5.645 20 C -0.234 4.234 21 H 0.086 0.914 22 C -0.071 4.071 23 N -0.955 5.955 24 Si 0.980 3.020 25 H -0.263 1.263 26 H -0.295 1.295 27 H -0.289 1.289 28 C 0.130 3.870 29 C -0.129 4.129 30 C -0.098 4.098 31 C -0.118 4.118 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.136 0.864 38 H 0.104 0.896 39 H 0.413 0.587 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.049 0.951 43 H 0.106 0.894 44 H 0.000 1.000 45 H 0.042 0.958 46 H 0.247 0.753 47 H 0.067 0.933 48 H 0.042 0.958 49 H 0.114 0.886 50 H 0.079 0.921 51 H 0.061 0.939 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.776 8.573 21.885 26.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.102 4.102 3 C -0.138 4.138 4 C -0.142 4.142 5 C -0.065 4.065 6 C -0.110 4.110 7 H 0.121 0.879 8 C -0.154 4.154 9 C -0.202 4.202 10 H 0.157 0.843 11 C 0.327 3.673 12 O -0.468 6.468 13 N -0.356 5.356 14 C 0.053 3.947 15 H 0.073 0.927 16 C -0.206 4.206 17 C -0.128 4.128 18 C 0.042 3.958 19 N -0.371 5.371 20 C -0.362 4.362 21 H 0.103 0.897 22 C -0.264 4.264 23 N -0.604 5.604 24 Si 0.808 3.192 25 H -0.188 1.188 26 H -0.223 1.223 27 H -0.216 1.216 28 C 0.005 3.995 29 C -0.147 4.147 30 C -0.098 4.098 31 C -0.174 4.174 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.162 0.838 36 H 0.162 0.838 37 H 0.154 0.846 38 H 0.123 0.877 39 H 0.250 0.750 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.125 0.875 44 H 0.018 0.982 45 H 0.060 0.940 46 H 0.056 0.944 47 H 0.085 0.915 48 H 0.059 0.941 49 H 0.132 0.868 50 H 0.098 0.902 51 H 0.080 0.920 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.481 7.819 21.912 26.402 hybrid contribution 0.061 -0.641 -1.536 1.666 sum -12.420 7.178 20.376 24.919 Atomic orbital electron populations 1.20893 0.89622 1.03598 1.03065 1.20133 0.97407 0.92547 1.00141 1.21307 0.94088 0.98310 1.00102 1.21253 0.94561 0.97792 1.00614 1.19145 0.92612 0.93898 1.00888 1.20949 0.90867 0.98636 1.00588 0.87890 1.23237 1.02706 0.95999 0.93469 1.22332 0.96240 1.06945 0.94715 0.84334 1.20090 0.84965 0.82838 0.79391 1.90659 1.69870 1.27613 1.58626 1.45925 1.24324 1.31943 1.33444 1.20825 0.84182 0.97357 0.92300 0.92665 1.22033 0.97282 1.02332 0.98952 1.23438 0.97419 1.00526 0.91394 1.22166 0.91188 0.94277 0.88161 1.46453 1.05054 1.83742 1.01882 1.19504 0.93589 1.40641 0.82508 0.89667 1.25678 0.95261 1.02875 1.02586 1.70028 0.98953 1.56892 1.34507 0.84985 0.77953 0.76710 0.79536 1.18762 1.22258 1.21604 1.22687 0.94216 0.96976 0.85654 1.21016 0.94176 0.97848 1.01701 1.20017 0.93324 0.96288 1.00187 1.20905 1.00355 0.93129 1.03009 0.90246 0.90684 0.90717 0.83839 0.83774 0.84594 0.87734 0.75040 0.90845 0.90527 0.93203 0.87541 0.98245 0.93973 0.94365 0.91522 0.94051 0.86771 0.90237 0.91973 0.89933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 9.60 71.23 0.68 -0.61 16 2 C -0.10 -1.74 5.88 -19.87 -0.12 -1.85 16 3 C -0.12 -1.92 9.70 22.27 0.22 -1.70 16 4 C -0.12 -2.12 9.30 22.27 0.21 -1.91 16 5 C -0.07 -1.38 5.61 -19.87 -0.11 -1.49 16 6 C -0.09 -2.00 5.55 -11.54 -0.06 -2.07 16 7 H 0.10 2.70 7.67 -2.39 -0.02 2.68 16 8 C -0.12 -1.88 9.56 30.59 0.29 -1.58 16 9 C -0.18 -3.90 5.82 -11.54 -0.07 -3.97 16 10 H 0.14 2.60 8.14 -2.38 -0.02 2.58 16 11 C 0.54 15.66 7.58 87.66 0.66 16.32 16 12 O -0.59 -21.83 15.92 -3.03 -0.05 -21.88 16 13 N -0.71 -18.97 5.08 -442.55 -2.25 -21.21 16 14 C 0.16 4.87 2.38 44.99 0.11 4.98 16 15 H 0.06 2.08 7.42 -2.39 -0.02 2.06 16 16 C -0.15 -3.66 9.31 71.98 0.67 -2.99 16 17 C -0.11 -3.80 3.47 -10.13 -0.04 -3.84 16 18 C 0.17 8.15 7.08 86.44 0.61 8.76 16 19 N -0.64 -33.68 3.70 -716.06 -2.65 -36.33 16 20 C -0.23 -13.37 10.70 84.03 0.90 -12.47 16 21 H 0.09 4.63 7.83 -2.91 -0.02 4.60 16 22 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 23 N -0.95 -58.93 11.39 21.65 0.25 -58.68 16 24 Si 0.98 46.46 29.55 68.60 2.03 48.49 16 25 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 26 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 27 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 28 C 0.13 5.11 7.64 86.49 0.66 5.77 16 29 C -0.13 -2.91 9.39 22.27 0.21 -2.70 16 30 C -0.10 -1.91 5.88 -19.87 -0.12 -2.03 16 31 C -0.12 -1.75 9.61 71.24 0.68 -1.07 16 32 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.70 8.09 -2.39 -0.02 0.68 16 34 H 0.07 0.77 5.94 -2.39 -0.01 0.75 16 35 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 36 H 0.14 1.71 6.02 -2.91 -0.02 1.69 16 37 H 0.14 1.38 6.18 -2.39 -0.01 1.37 16 38 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.41 8.97 8.60 -92.71 -0.80 8.17 16 40 H 0.07 1.73 7.52 -2.39 -0.02 1.72 16 41 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 43 H 0.11 3.41 8.14 -2.38 -0.02 3.39 16 44 H 0.00 -0.01 7.99 -2.38 -0.02 -0.03 16 45 H 0.04 2.27 7.16 -2.39 -0.02 2.26 16 46 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 47 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 48 H 0.04 1.60 8.10 -2.38 -0.02 1.58 16 49 H 0.11 2.61 8.06 -2.91 -0.02 2.59 16 50 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.06 0.97 8.09 -2.39 -0.02 0.95 16 52 H 0.08 1.00 5.94 -2.38 -0.01 0.98 16 Total: -1.00 -76.12 418.64 3.31 -72.81 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: 0.12 Total: 24.96 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 5.86 Total: -8.15 kcal Atomic # 7 Polarization: -111.57 SS G_CDS: -4.65 Total: -116.22 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.05 Total: -21.88 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -76.12 3.31 -72.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970548507.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.629 kcal (2) G-P(sol) polarization free energy of solvation -76.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds