Wall clock time and date at job start Wed Apr 1 2020 02:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36939 * 120.00052 * 2 1 4 4 H 1.07996 * 119.99491 * 202.43422 * 3 2 1 5 5 C 1.38808 * 119.99734 * 22.43836 * 3 2 1 6 6 N 1.31617 * 120.00504 * 10.06371 * 5 3 2 7 7 Si 1.86804 * 119.99692 * 190.06249 * 5 3 2 8 8 H 1.48498 * 109.46956 * 89.99776 * 7 5 3 9 9 H 1.48495 * 109.47218 * 209.99816 * 7 5 3 10 10 H 1.48502 * 109.47108 * 330.00397 * 7 5 3 11 11 C 1.46502 * 119.99896 * 179.97438 * 2 1 3 12 12 H 1.08994 * 110.88728 * 183.87899 * 11 2 1 13 13 C 1.55162 * 111.03682 * 307.78848 * 11 2 1 14 14 C 1.54329 * 103.01914 * 153.39475 * 13 11 2 15 15 N 1.47030 * 107.26915 * 338.13785 * 14 13 11 16 16 C 1.34769 * 125.64815 * 178.85045 * 15 14 13 17 17 O 1.21287 * 119.99689 * 179.69063 * 16 15 14 18 18 C 1.50697 * 120.00337 * 359.69374 * 16 15 14 19 19 H 1.08998 * 115.54995 * 330.60121 * 18 16 15 20 20 C 1.52999 * 117.49841 * 184.93585 * 18 16 15 21 21 H 1.08998 * 117.50064 * 359.97438 * 20 18 16 22 22 C 1.50705 * 117.49753 * 144.99603 * 20 18 16 23 23 C 1.38234 * 120.00102 * 8.47177 * 22 20 18 24 24 C 1.38231 * 119.99820 * 179.78832 * 23 22 20 25 25 C 1.38237 * 120.00126 * 0.44135 * 24 23 22 26 26 C 1.38234 * 120.00133 * 359.80994 * 25 24 23 27 27 C 1.38235 * 119.99654 * 359.97438 * 26 25 24 28 28 C 1.52999 * 60.03144 * 252.49424 * 20 18 16 29 29 C 1.52996 * 117.49611 * 107.47769 * 28 20 18 30 30 C 1.53001 * 117.50261 * 252.49813 * 28 20 18 31 31 C 1.47429 * 108.69840 * 358.58786 * 15 14 13 32 32 H 1.09000 * 109.47512 * 275.62697 * 1 2 3 33 33 H 1.08997 * 109.47013 * 35.62372 * 1 2 3 34 34 H 1.09001 * 109.47304 * 155.62343 * 1 2 3 35 35 H 0.96997 * 120.00522 * 180.02562 * 6 5 3 36 36 H 1.09003 * 110.71665 * 271.95160 * 13 11 2 37 37 H 1.08997 * 110.72117 * 35.04868 * 13 11 2 38 38 H 1.09001 * 109.99129 * 218.66527 * 14 13 11 39 39 H 1.09001 * 109.78139 * 97.49568 * 14 13 11 40 40 H 1.08000 * 120.00041 * 359.97438 * 23 22 20 41 41 H 1.08007 * 120.00025 * 180.27622 * 24 23 22 42 42 H 1.08000 * 119.99998 * 179.83488 * 25 24 23 43 43 H 1.07999 * 120.00006 * 179.97438 * 26 25 24 44 44 H 1.08007 * 119.99795 * 180.02562 * 27 26 25 45 45 H 1.08997 * 109.47512 * 65.45373 * 29 28 20 46 46 H 1.09006 * 109.46997 * 185.45876 * 29 28 20 47 47 H 1.09008 * 109.47441 * 305.45289 * 29 28 20 48 48 H 1.09004 * 109.46976 * 59.99470 * 30 28 20 49 49 H 1.08992 * 109.47416 * 180.02562 * 30 28 20 50 50 H 1.09005 * 109.47167 * 300.00287 * 30 28 20 51 51 H 1.08993 * 110.36339 * 143.19393 * 31 15 14 52 52 H 1.08999 * 110.35936 * 265.40827 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1684 1.2212 -0.3569 5 6 1.5344 2.3425 0.4588 6 7 0.3734 2.2705 1.0747 7 14 2.3543 4.0013 0.2023 8 1 1.9121 4.5769 -1.0932 9 1 1.9735 4.9178 1.3069 10 1 3.8291 3.8278 0.1891 11 6 2.1975 -1.2688 0.0006 12 1 3.2716 -1.0973 0.0694 13 6 1.7074 -2.1943 1.1455 14 6 2.0203 -3.6070 0.6085 15 7 2.1184 -3.5058 -0.8550 16 6 2.4020 -4.5206 -1.6952 17 8 2.4518 -4.3222 -2.8907 18 6 2.6572 -5.9019 -1.1494 19 1 3.0829 -5.9399 -0.1467 20 6 3.0870 -6.9850 -2.1409 21 1 3.1848 -6.6986 -3.1880 22 6 4.0666 -8.0227 -1.6564 23 6 4.4074 -8.0798 -0.3179 24 6 5.3026 -9.0345 0.1271 25 6 5.8638 -9.9263 -0.7677 26 6 5.5270 -9.8659 -2.1070 27 6 4.6284 -8.9140 -2.5513 28 6 1.6783 -7.0104 -1.5445 29 6 0.5152 -6.6312 -2.4633 30 6 1.3718 -8.0874 -0.5018 31 6 1.8489 -2.1116 -1.2515 32 1 -0.3634 0.1008 1.0227 33 1 -0.3633 0.8353 -0.5986 34 1 -0.3634 -0.9360 -0.4241 35 1 -0.0567 3.0787 1.3950 36 1 2.2602 -1.9971 2.0640 37 1 0.6365 -2.0729 1.3079 38 1 1.2191 -4.2945 0.8797 39 1 2.9670 -3.9568 1.0202 40 1 3.9721 -7.3805 0.3805 41 1 5.5655 -9.0820 1.1736 42 1 6.5652 -10.6704 -0.4203 43 1 5.9658 -10.5623 -2.8061 44 1 4.3648 -8.8671 -3.5977 45 1 0.4219 -7.3730 -3.2564 46 1 -0.4085 -6.5987 -1.8856 47 1 0.7037 -5.6515 -2.9026 48 1 2.0429 -7.9707 0.3492 49 1 0.3394 -7.9861 -0.1675 50 1 1.5149 -9.0731 -0.9447 51 1 2.4842 -1.8262 -2.0899 52 1 0.7980 -1.9883 -1.5134 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971541618.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:42 Heat of formation + Delta-G solvation = 41.858542 kcal Electronic energy + Delta-G solvation = -30082.559063 eV Core-core repulsion = 26241.409368 eV Total energy + Delta-G solvation = -3841.149695 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 10.07 seconds Orbital eigenvalues (eV) -40.83219 -39.38077 -38.03683 -36.71953 -34.81479 -31.68597 -31.55472 -31.16075 -29.83283 -29.29950 -27.94272 -27.58892 -26.08144 -24.94639 -23.36884 -22.67643 -22.31126 -21.29399 -19.52375 -19.31441 -18.39762 -17.52887 -17.06466 -16.47303 -15.90816 -15.55010 -15.45072 -14.90918 -14.74013 -14.42656 -14.28205 -13.73359 -13.62338 -13.55507 -13.33560 -13.20467 -12.87870 -12.76447 -12.64583 -12.49374 -12.44114 -12.27395 -12.13008 -11.88461 -11.60705 -11.35166 -11.24490 -11.07689 -10.91529 -10.83663 -10.56534 -10.50324 -10.48027 -10.26510 -10.10897 -9.90515 -9.87299 -9.58669 -9.15130 -8.73147 -8.61079 -8.33163 -6.83646 -5.77307 -3.25395 1.06286 1.16204 2.56270 3.12232 3.36412 3.40335 3.43089 3.44002 3.88025 4.24554 4.45086 4.46304 4.52761 4.65764 4.74302 4.75507 4.88498 4.93329 4.98628 5.02544 5.24355 5.27995 5.31003 5.34943 5.41508 5.46006 5.52473 5.59093 5.68435 5.71000 5.75904 5.77110 5.78633 5.81256 5.87737 5.90472 5.95312 6.01195 6.19113 6.25873 6.27308 6.29374 6.37689 6.42167 6.54683 6.63141 6.75169 6.75857 6.86218 7.36074 7.69129 7.77277 7.79107 8.32407 8.37594 9.17856 9.79424 10.27489 11.26932 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020333 B = 0.002250 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.719442 B =12440.803569 C =12804.026800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.586 5.586 3 C -0.259 4.259 4 H 0.070 0.930 5 C 0.004 3.996 6 N -0.907 5.907 7 Si 0.908 3.092 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.174 3.826 12 H 0.078 0.922 13 C -0.151 4.151 14 C 0.104 3.896 15 N -0.608 5.608 16 C 0.557 3.443 17 O -0.546 6.546 18 C -0.173 4.173 19 H 0.122 0.878 20 C -0.082 4.082 21 H 0.126 0.874 22 C -0.044 4.044 23 C -0.118 4.118 24 C -0.117 4.117 25 C -0.127 4.127 26 C -0.118 4.118 27 C -0.111 4.111 28 C -0.079 4.079 29 C -0.129 4.129 30 C -0.117 4.117 31 C 0.085 3.915 32 H 0.033 0.967 33 H 0.044 0.956 34 H -0.001 1.001 35 H 0.253 0.747 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.074 0.926 48 H 0.062 0.938 49 H 0.063 0.937 50 H 0.064 0.936 51 H 0.071 0.929 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.927 -25.516 -1.264 26.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.307 5.307 3 C -0.388 4.388 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.552 5.552 7 Si 0.738 3.262 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.063 3.937 12 H 0.096 0.904 13 C -0.191 4.191 14 C -0.020 4.020 15 N -0.341 5.341 16 C 0.346 3.654 17 O -0.425 6.425 18 C -0.194 4.194 19 H 0.140 0.860 20 C -0.100 4.100 21 H 0.144 0.856 22 C -0.044 4.044 23 C -0.136 4.136 24 C -0.135 4.135 25 C -0.145 4.145 26 C -0.136 4.136 27 C -0.129 4.129 28 C -0.080 4.080 29 C -0.186 4.186 30 C -0.174 4.174 31 C -0.039 4.039 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.018 0.982 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.093 0.907 48 H 0.081 0.919 49 H 0.082 0.918 50 H 0.083 0.917 51 H 0.090 0.910 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.840 -25.260 -1.861 25.787 hybrid contribution 0.432 1.004 0.123 1.100 sum 5.272 -24.256 -1.738 24.883 Atomic orbital electron populations 1.20826 0.82311 0.95462 0.99692 1.43825 1.01948 0.99841 1.85060 1.19243 0.98056 0.85263 1.36240 0.91199 1.25040 0.97528 0.98616 0.98259 1.70063 1.17069 1.27207 1.40884 0.86200 0.78881 0.83788 0.77332 1.21415 1.21691 1.20443 1.21396 0.96373 0.85831 0.90088 0.90417 1.23210 1.02865 0.92625 1.00418 1.22056 1.00505 0.99349 0.80064 1.48375 1.68571 1.09621 1.07494 1.19089 0.76447 0.84310 0.85553 1.90672 1.52788 1.83884 1.15122 1.22676 1.06767 0.89108 1.00850 0.85997 1.21271 0.94316 0.95456 0.98984 0.85620 1.19101 0.96352 0.95480 0.93429 1.21098 0.98346 0.98855 0.95309 1.21127 0.97161 0.95537 0.99692 1.21140 1.00318 0.99445 0.93599 1.21122 0.97991 0.98629 0.95878 1.20969 0.97154 0.95245 0.99573 1.21637 0.90778 0.96249 0.99308 1.21525 0.95681 1.02943 0.98440 1.21440 1.01888 0.96988 0.97075 1.23037 1.01212 0.79132 1.00521 0.94840 0.93690 0.98235 0.93660 0.90498 0.90485 0.91973 0.92032 0.85973 0.86066 0.86254 0.86097 0.85956 0.91770 0.91934 0.90692 0.91943 0.91773 0.91730 0.91018 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.85 7.55 59.85 0.45 4.30 16 2 N -0.59 -14.20 2.96 -171.03 -0.51 -14.71 16 3 C -0.26 -6.94 9.63 -15.06 -0.15 -7.08 16 4 H 0.07 1.84 7.84 -52.49 -0.41 1.43 16 5 C 0.00 0.11 5.17 -17.43 -0.09 0.02 16 6 N -0.91 -25.81 10.51 55.49 0.58 -25.23 16 7 Si 0.91 21.60 29.57 -169.99 -5.03 16.57 16 8 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 C 0.17 3.43 3.53 -65.78 -0.23 3.20 16 12 H 0.08 1.56 7.95 -51.93 -0.41 1.15 16 13 C -0.15 -2.47 6.50 -24.89 -0.16 -2.63 16 14 C 0.10 1.39 6.26 -3.06 -0.02 1.37 16 15 N -0.61 -9.68 3.33 -170.51 -0.57 -10.25 16 16 C 0.56 8.83 6.52 -10.99 -0.07 8.76 16 17 O -0.55 -10.38 15.14 5.55 0.08 -10.29 16 18 C -0.17 -2.07 4.59 -91.74 -0.42 -2.49 16 19 H 0.12 1.27 5.46 -51.93 -0.28 0.99 16 20 C -0.08 -0.92 5.27 -91.77 -0.48 -1.40 16 21 H 0.13 1.59 7.68 -51.93 -0.40 1.19 16 22 C -0.04 -0.44 5.04 -104.62 -0.53 -0.97 16 23 C -0.12 -1.09 7.78 -39.59 -0.31 -1.40 16 24 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 25 C -0.13 -1.00 10.05 -39.58 -0.40 -1.39 16 26 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 27 C -0.11 -1.03 9.74 -39.58 -0.39 -1.41 16 28 C -0.08 -0.82 2.70 -154.47 -0.42 -1.24 16 29 C -0.13 -1.43 9.60 37.16 0.36 -1.07 16 30 C -0.12 -0.98 8.62 37.16 0.32 -0.66 16 31 C 0.09 1.58 6.46 -2.53 -0.02 1.57 16 32 H 0.03 0.85 7.34 -51.93 -0.38 0.47 16 33 H 0.04 1.17 7.25 -51.93 -0.38 0.79 16 34 H 0.00 -0.02 6.37 -51.93 -0.33 -0.35 16 35 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.08 1.34 6.99 -51.93 -0.36 0.98 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.71 7.94 -51.93 -0.41 0.30 16 40 H 0.12 1.02 5.19 -52.49 -0.27 0.75 16 41 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 42 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.63 8.01 -51.93 -0.42 0.21 16 47 H 0.07 1.05 5.52 -51.92 -0.29 0.76 16 48 H 0.06 0.48 5.93 -51.93 -0.31 0.18 16 49 H 0.06 0.49 7.99 -51.93 -0.41 0.08 16 50 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 52 H 0.07 1.32 6.44 -51.93 -0.33 0.99 16 LS Contribution 402.98 15.07 6.07 6.07 Total: -1.00 -30.70 402.98 -11.04 -41.74 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -8.34 Total: 1.36 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: -3.34 Total: -5.26 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.49 Total: -50.18 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.70 -11.04 -41.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971541618.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.595 kcal (2) G-P(sol) polarization free energy of solvation -30.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.07 seconds