Wall clock time and date at job start Wed Apr 1 2020 02:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36939 * 120.00462 * 2 1 4 4 H 1.08000 * 120.00528 * 200.65814 * 3 2 1 5 5 C 1.38812 * 119.99827 * 20.64970 * 3 2 1 6 6 N 1.31620 * 119.99961 * 15.51569 * 5 3 2 7 7 Si 1.86799 * 120.00129 * 195.51386 * 5 3 2 8 8 H 1.48504 * 109.46916 * 94.98152 * 7 5 3 9 9 H 1.48500 * 109.47204 * 214.97599 * 7 5 3 10 10 H 1.48497 * 109.47178 * 334.97975 * 7 5 3 11 11 C 1.46503 * 120.00151 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.64563 * 179.30249 * 11 2 1 13 13 C 1.55155 * 110.71906 * 56.15606 * 11 2 1 14 14 C 1.54916 * 101.58369 * 205.96098 * 13 11 2 15 15 N 1.47428 * 104.82960 * 37.00560 * 14 13 11 16 16 C 1.34782 * 125.64622 * 155.90810 * 15 14 13 17 17 O 1.21278 * 119.99948 * 179.97438 * 16 15 14 18 18 C 1.50694 * 120.00000 * 359.97438 * 16 15 14 19 19 H 1.09001 * 115.55276 * 331.07336 * 18 16 15 20 20 C 1.52998 * 117.50112 * 185.40644 * 18 16 15 21 21 H 1.09001 * 117.49427 * 359.97438 * 20 18 16 22 22 C 1.50700 * 117.50273 * 144.99784 * 20 18 16 23 23 C 1.38231 * 119.99770 * 8.33102 * 22 20 18 24 24 C 1.38236 * 119.99803 * 179.80993 * 23 22 20 25 25 C 1.38241 * 119.99606 * 0.40156 * 24 23 22 26 26 C 1.38228 * 120.00468 * 359.84936 * 25 24 23 27 27 C 1.38236 * 119.99819 * 188.60469 * 22 20 18 28 28 C 1.52995 * 117.50143 * 116.74123 * 18 16 15 29 29 C 1.53001 * 117.50246 * 214.97912 * 28 18 16 30 30 C 1.52999 * 117.49880 * 0.02562 * 28 18 16 31 31 C 1.47022 * 108.70703 * 335.87873 * 15 14 13 32 32 H 1.09002 * 109.47300 * 274.13581 * 1 2 3 33 33 H 1.09002 * 109.47289 * 34.13448 * 1 2 3 34 34 H 1.08997 * 109.47393 * 154.13586 * 1 2 3 35 35 H 0.96997 * 120.00268 * 180.02562 * 6 5 3 36 36 H 1.09000 * 111.00388 * 324.03361 * 13 11 2 37 37 H 1.08997 * 111.00767 * 87.88429 * 13 11 2 38 38 H 1.08994 * 110.36994 * 155.84850 * 14 13 11 39 39 H 1.09002 * 110.36560 * 278.17110 * 14 13 11 40 40 H 1.07999 * 120.00122 * 0.02562 * 23 22 20 41 41 H 1.07999 * 120.00564 * 180.23132 * 24 23 22 42 42 H 1.08005 * 119.99604 * 179.83241 * 25 24 23 43 43 H 1.08000 * 120.00323 * 179.97438 * 26 25 24 44 44 H 1.08006 * 120.00160 * 359.97438 * 27 22 20 45 45 H 1.09001 * 109.47117 * 111.38926 * 29 28 18 46 46 H 1.08998 * 109.47323 * 231.39106 * 29 28 18 47 47 H 1.09000 * 109.46814 * 351.39151 * 29 28 18 48 48 H 1.09007 * 109.47223 * 64.95929 * 30 28 18 49 49 H 1.08996 * 109.47904 * 184.96135 * 30 28 18 50 50 H 1.08999 * 109.47291 * 304.96742 * 30 28 18 51 51 H 1.08999 * 109.87854 * 241.64384 * 31 15 14 52 52 H 1.08993 * 109.88426 * 120.47318 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1776 1.2160 -0.3300 5 6 1.5226 2.3494 0.4239 6 7 0.3977 2.2805 1.1039 7 14 2.2751 4.0130 0.0295 8 1 1.6596 4.5535 -1.2092 9 1 2.0253 4.9488 1.1552 10 1 3.7384 3.8594 -0.1712 11 6 2.1974 -1.2687 0.0006 12 1 3.2729 -1.0916 -0.0119 13 6 1.7720 -2.1488 -1.2044 14 6 2.0798 -3.5716 -0.6744 15 7 1.7253 -3.5264 0.7559 16 6 1.3886 -4.5876 1.5156 17 8 1.1150 -4.4324 2.6868 18 6 1.3523 -5.9668 0.9096 19 1 1.1200 -6.0069 -0.1546 20 6 0.8415 -7.1110 1.7875 21 1 0.5321 -6.8661 2.8036 22 6 0.0557 -8.2070 1.1148 23 6 -0.0334 -8.2470 -0.2640 24 6 -0.7509 -9.2546 -0.8812 25 6 -1.3861 -10.2173 -0.1191 26 6 -1.3013 -10.1742 1.2599 27 6 -0.5806 -9.1689 1.8769 28 6 2.3326 -7.0055 1.4580 29 6 2.9114 -8.0212 0.4709 30 6 3.2745 -6.5646 2.5802 31 6 1.8004 -2.1322 1.2165 32 1 -0.3634 0.0741 1.0250 33 1 -0.3634 0.8506 -0.5767 34 1 -0.3634 -0.9247 -0.4483 35 1 -0.0407 3.0936 1.3999 36 1 0.7093 -2.0326 -1.4171 37 1 2.3722 -1.9216 -2.0853 38 1 1.4691 -4.3101 -1.1936 39 1 3.1385 -3.8007 -0.7958 40 1 0.4604 -7.4932 -0.8592 41 1 -0.8175 -9.2882 -1.9586 42 1 -1.9490 -11.0030 -0.6013 43 1 -1.7979 -10.9261 1.8552 44 1 -0.5142 -9.1353 2.9544 45 1 3.9751 -7.8274 0.3320 46 1 2.7739 -9.0286 0.8636 47 1 2.3977 -7.9310 -0.4862 48 1 2.6922 -6.3234 3.4696 49 1 3.9700 -7.3720 2.8093 50 1 3.8323 -5.6840 2.2614 51 1 2.5544 -2.0403 1.9983 52 1 0.8294 -1.8143 1.5958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971541621.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:00 Heat of formation + Delta-G solvation = 42.730370 kcal Electronic energy + Delta-G solvation = -30169.267069 eV Core-core repulsion = 26328.155180 eV Total energy + Delta-G solvation = -3841.111890 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 4.30 seconds Orbital eigenvalues (eV) -40.77900 -39.34285 -38.01813 -36.69379 -34.78443 -31.67612 -31.53764 -31.14511 -29.79260 -29.29526 -27.94131 -27.58621 -26.06905 -24.91899 -23.33976 -22.65510 -22.35589 -21.31338 -19.52445 -19.20615 -18.42426 -17.50565 -17.04293 -16.43283 -15.86372 -15.50943 -15.38523 -14.92850 -14.78032 -14.38506 -14.09876 -13.92672 -13.60839 -13.51972 -13.31174 -13.11589 -12.89687 -12.73519 -12.65980 -12.50386 -12.34987 -12.20785 -12.09055 -11.84839 -11.63929 -11.50444 -11.22683 -11.08658 -10.93838 -10.82234 -10.57408 -10.52385 -10.46806 -10.27631 -10.04113 -9.88678 -9.83277 -9.54139 -9.13391 -8.71145 -8.58099 -8.27085 -6.85554 -5.77677 -3.22887 1.08067 1.17925 2.61934 3.17493 3.36397 3.42762 3.43741 3.44667 3.91685 4.27069 4.45369 4.48294 4.55339 4.66175 4.75928 4.76962 4.89431 4.95005 4.98225 5.01450 5.21493 5.26843 5.32438 5.36898 5.39618 5.44926 5.53232 5.58751 5.67385 5.74514 5.75792 5.79838 5.81303 5.83112 5.88756 5.90708 5.97418 5.99980 6.18553 6.27314 6.28881 6.33358 6.37028 6.43982 6.54078 6.67992 6.76919 6.81669 6.86143 7.33037 7.68775 7.77156 7.84826 8.32151 8.44835 9.16872 9.80027 10.28217 11.27213 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020802 B = 0.002289 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.673806 B =12227.159640 C =12530.036832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.586 5.586 3 C -0.261 4.261 4 H 0.072 0.928 5 C 0.003 3.997 6 N -0.903 5.903 7 Si 0.907 3.093 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.154 4.154 14 C 0.103 3.897 15 N -0.608 5.608 16 C 0.555 3.445 17 O -0.544 6.544 18 C -0.173 4.173 19 H 0.122 0.878 20 C -0.082 4.082 21 H 0.126 0.874 22 C -0.044 4.044 23 C -0.118 4.118 24 C -0.117 4.117 25 C -0.127 4.127 26 C -0.118 4.118 27 C -0.111 4.111 28 C -0.080 4.080 29 C -0.116 4.116 30 C -0.119 4.119 31 C 0.088 3.912 32 H 0.029 0.971 33 H 0.046 0.954 34 H 0.002 0.998 35 H 0.254 0.746 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.061 0.939 48 H 0.069 0.931 49 H 0.062 0.938 50 H 0.061 0.939 51 H 0.059 0.941 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.523 -25.708 -4.291 26.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.306 5.306 3 C -0.390 4.390 4 H 0.090 0.910 5 C -0.196 4.196 6 N -0.547 5.547 7 Si 0.737 3.263 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.204 1.204 11 C 0.063 3.937 12 H 0.096 0.904 13 C -0.194 4.194 14 C -0.020 4.020 15 N -0.341 5.341 16 C 0.343 3.657 17 O -0.422 6.422 18 C -0.194 4.194 19 H 0.140 0.860 20 C -0.101 4.101 21 H 0.144 0.856 22 C -0.044 4.044 23 C -0.136 4.136 24 C -0.135 4.135 25 C -0.145 4.145 26 C -0.136 4.136 27 C -0.129 4.129 28 C -0.080 4.080 29 C -0.173 4.173 30 C -0.176 4.176 31 C -0.037 4.037 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.020 0.980 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.081 0.919 50 H 0.080 0.920 51 H 0.077 0.923 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.243 -25.471 -3.544 25.747 hybrid contribution 0.131 1.054 -0.232 1.087 sum 1.374 -24.418 -3.776 24.746 Atomic orbital electron populations 1.20793 0.82405 0.95810 0.99432 1.43952 1.01925 0.99932 1.84786 1.19248 0.97337 0.84732 1.37723 0.91049 1.25015 0.97921 0.98545 0.98095 1.70102 1.19284 1.27034 1.38308 0.86205 0.78658 0.83956 0.77517 1.21488 1.21774 1.20385 1.21340 0.96356 0.85904 0.90138 0.90381 1.23363 1.02805 0.93196 1.00056 1.22312 0.99718 0.98898 0.81107 1.48451 1.66908 1.07715 1.11071 1.19108 0.76783 0.84181 0.85608 1.90679 1.49705 1.85531 1.16292 1.22656 1.07475 0.89232 1.00021 0.86046 1.21389 0.94776 0.94066 0.99848 0.85615 1.19111 0.97039 0.95008 0.93217 1.21090 0.99653 0.98708 0.94156 1.21123 0.97649 0.94917 0.99846 1.21138 1.00119 0.99169 0.94086 1.21122 0.99164 0.98495 0.94832 1.20973 0.97472 0.94509 0.99958 1.21652 0.90329 0.97185 0.98869 1.21436 1.00739 0.97526 0.97642 1.21409 0.98312 1.00967 0.96943 1.22895 1.02361 0.78869 0.99535 0.95239 0.93541 0.97978 0.93613 0.90485 0.90396 0.91573 0.91608 0.86018 0.86087 0.86263 0.86097 0.85941 0.91780 0.91719 0.91982 0.91213 0.91866 0.92034 0.92257 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.90 7.72 59.84 0.46 4.36 16 2 N -0.59 -14.24 2.94 -171.39 -0.50 -14.74 16 3 C -0.26 -6.98 9.62 -15.06 -0.14 -7.12 16 4 H 0.07 1.85 7.84 -52.49 -0.41 1.44 16 5 C 0.00 0.09 5.04 -17.43 -0.09 0.00 16 6 N -0.90 -26.21 10.72 55.49 0.60 -25.61 16 7 Si 0.91 21.56 29.58 -169.99 -5.03 16.54 16 8 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 C 0.17 3.39 3.43 -66.09 -0.23 3.16 16 12 H 0.08 1.50 7.92 -51.93 -0.41 1.09 16 13 C -0.15 -2.40 6.60 -24.58 -0.16 -2.56 16 14 C 0.10 1.35 6.68 -2.52 -0.02 1.33 16 15 N -0.61 -9.97 3.33 -170.52 -0.57 -10.54 16 16 C 0.56 9.13 6.73 -10.99 -0.07 9.06 16 17 O -0.54 -10.89 15.87 5.56 0.09 -10.80 16 18 C -0.17 -2.12 4.59 -91.78 -0.42 -2.54 16 19 H 0.12 1.29 4.84 -51.93 -0.25 1.04 16 20 C -0.08 -0.95 5.20 -91.73 -0.48 -1.43 16 21 H 0.13 1.65 7.57 -51.93 -0.39 1.25 16 22 C -0.04 -0.45 5.04 -104.63 -0.53 -0.98 16 23 C -0.12 -1.11 7.78 -39.58 -0.31 -1.42 16 24 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 25 C -0.13 -1.02 10.05 -39.58 -0.40 -1.42 16 26 C -0.12 -0.99 10.05 -39.59 -0.40 -1.39 16 27 C -0.11 -1.06 9.74 -39.58 -0.39 -1.44 16 28 C -0.08 -0.84 2.70 -154.47 -0.42 -1.25 16 29 C -0.12 -0.96 8.56 37.16 0.32 -0.64 16 30 C -0.12 -1.32 8.75 37.16 0.33 -1.00 16 31 C 0.09 1.72 6.51 -3.06 -0.02 1.70 16 32 H 0.03 0.79 7.35 -51.93 -0.38 0.41 16 33 H 0.05 1.21 7.18 -51.93 -0.37 0.84 16 34 H 0.00 0.04 6.19 -51.93 -0.32 -0.28 16 35 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.08 1.29 6.20 -51.93 -0.32 0.97 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.07 0.72 6.93 -51.93 -0.36 0.36 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.12 1.03 5.19 -52.49 -0.27 0.76 16 41 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 42 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 43 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 45 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.48 5.94 -51.93 -0.31 0.17 16 48 H 0.07 0.88 7.45 -51.93 -0.39 0.50 16 49 H 0.06 0.57 8.04 -51.93 -0.42 0.15 16 50 H 0.06 0.74 8.02 -51.93 -0.42 0.32 16 51 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 52 H 0.07 1.64 7.01 -51.93 -0.36 1.28 16 LS Contribution 403.47 15.07 6.08 6.08 Total: -1.00 -31.51 403.47 -11.02 -42.53 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -8.33 Total: 1.51 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -3.36 Total: -4.97 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: -0.48 Total: -50.89 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.51 -11.02 -42.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971541621.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.259 kcal (2) G-P(sol) polarization free energy of solvation -31.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.31 seconds