Wall clock time and date at job start Wed Apr 1 2020 02:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.36939 * 120.00462 * 2 1 4 4 H 1.08000 * 120.00528 * 200.65814 * 3 2 1 5 5 C 1.38812 * 119.99827 * 20.64970 * 3 2 1 6 6 N 1.31620 * 119.99961 * 15.51569 * 5 3 2 7 7 Si 1.86799 * 120.00129 * 195.51386 * 5 3 2 8 8 H 1.48504 * 109.46916 * 94.98152 * 7 5 3 9 9 H 1.48500 * 109.47204 * 214.97599 * 7 5 3 10 10 H 1.48497 * 109.47178 * 334.97975 * 7 5 3 11 11 C 1.46503 * 120.00151 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.64563 * 179.30249 * 11 2 1 13 13 C 1.55155 * 110.71906 * 56.15606 * 11 2 1 14 14 C 1.54916 * 101.58369 * 205.96098 * 13 11 2 15 15 N 1.47428 * 104.82960 * 37.00560 * 14 13 11 16 16 C 1.34782 * 125.64622 * 155.90810 * 15 14 13 17 17 O 1.21278 * 119.99948 * 179.97438 * 16 15 14 18 18 C 1.50694 * 120.00000 * 359.97438 * 16 15 14 19 19 H 1.09001 * 115.55276 * 331.07336 * 18 16 15 20 20 C 1.52998 * 117.50112 * 185.40644 * 18 16 15 21 21 H 1.09001 * 117.49427 * 359.97438 * 20 18 16 22 22 C 1.50700 * 117.50273 * 144.99784 * 20 18 16 23 23 C 1.38231 * 119.99770 * 8.33102 * 22 20 18 24 24 C 1.38236 * 119.99803 * 179.80993 * 23 22 20 25 25 C 1.38241 * 119.99606 * 0.40156 * 24 23 22 26 26 C 1.38228 * 120.00468 * 359.84936 * 25 24 23 27 27 C 1.38236 * 119.99819 * 188.60469 * 22 20 18 28 28 C 1.52995 * 117.50143 * 116.74123 * 18 16 15 29 29 C 1.53001 * 117.50246 * 214.97912 * 28 18 16 30 30 C 1.52999 * 117.49880 * 0.02562 * 28 18 16 31 31 C 1.47022 * 108.70703 * 335.87873 * 15 14 13 32 32 H 1.09002 * 109.47300 * 274.13581 * 1 2 3 33 33 H 1.09002 * 109.47289 * 34.13448 * 1 2 3 34 34 H 1.08997 * 109.47393 * 154.13586 * 1 2 3 35 35 H 0.96997 * 120.00268 * 180.02562 * 6 5 3 36 36 H 1.09000 * 111.00388 * 324.03361 * 13 11 2 37 37 H 1.08997 * 111.00767 * 87.88429 * 13 11 2 38 38 H 1.08994 * 110.36994 * 155.84850 * 14 13 11 39 39 H 1.09002 * 110.36560 * 278.17110 * 14 13 11 40 40 H 1.07999 * 120.00122 * 0.02562 * 23 22 20 41 41 H 1.07999 * 120.00564 * 180.23132 * 24 23 22 42 42 H 1.08005 * 119.99604 * 179.83241 * 25 24 23 43 43 H 1.08000 * 120.00323 * 179.97438 * 26 25 24 44 44 H 1.08006 * 120.00160 * 359.97438 * 27 22 20 45 45 H 1.09001 * 109.47117 * 111.38926 * 29 28 18 46 46 H 1.08998 * 109.47323 * 231.39106 * 29 28 18 47 47 H 1.09000 * 109.46814 * 351.39151 * 29 28 18 48 48 H 1.09007 * 109.47223 * 64.95929 * 30 28 18 49 49 H 1.08996 * 109.47904 * 184.96135 * 30 28 18 50 50 H 1.08999 * 109.47291 * 304.96742 * 30 28 18 51 51 H 1.08999 * 109.87854 * 241.64384 * 31 15 14 52 52 H 1.08993 * 109.88426 * 120.47318 * 31 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1776 1.2160 -0.3300 5 6 1.5226 2.3494 0.4239 6 7 0.3977 2.2805 1.1039 7 14 2.2751 4.0130 0.0295 8 1 1.6596 4.5535 -1.2092 9 1 2.0253 4.9488 1.1552 10 1 3.7384 3.8594 -0.1712 11 6 2.1974 -1.2687 0.0006 12 1 3.2729 -1.0916 -0.0119 13 6 1.7720 -2.1488 -1.2044 14 6 2.0798 -3.5716 -0.6744 15 7 1.7253 -3.5264 0.7559 16 6 1.3886 -4.5876 1.5156 17 8 1.1150 -4.4324 2.6868 18 6 1.3523 -5.9668 0.9096 19 1 1.1200 -6.0069 -0.1546 20 6 0.8415 -7.1110 1.7875 21 1 0.5321 -6.8661 2.8036 22 6 0.0557 -8.2070 1.1148 23 6 -0.0334 -8.2470 -0.2640 24 6 -0.7509 -9.2546 -0.8812 25 6 -1.3861 -10.2173 -0.1191 26 6 -1.3013 -10.1742 1.2599 27 6 -0.5806 -9.1689 1.8769 28 6 2.3326 -7.0055 1.4580 29 6 2.9114 -8.0212 0.4709 30 6 3.2745 -6.5646 2.5802 31 6 1.8004 -2.1322 1.2165 32 1 -0.3634 0.0741 1.0250 33 1 -0.3634 0.8506 -0.5767 34 1 -0.3634 -0.9247 -0.4483 35 1 -0.0407 3.0936 1.3999 36 1 0.7093 -2.0326 -1.4171 37 1 2.3722 -1.9216 -2.0853 38 1 1.4691 -4.3101 -1.1936 39 1 3.1385 -3.8007 -0.7958 40 1 0.4604 -7.4932 -0.8592 41 1 -0.8175 -9.2882 -1.9586 42 1 -1.9490 -11.0030 -0.6013 43 1 -1.7979 -10.9261 1.8552 44 1 -0.5142 -9.1353 2.9544 45 1 3.9751 -7.8274 0.3320 46 1 2.7739 -9.0286 0.8636 47 1 2.3977 -7.9310 -0.4862 48 1 2.6922 -6.3234 3.4696 49 1 3.9700 -7.3720 2.8093 50 1 3.8323 -5.6840 2.2614 51 1 2.5544 -2.0403 1.9983 52 1 0.8294 -1.8143 1.5958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971541621.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:55 Heat of formation + Delta-G solvation = 26.854690 kcal Electronic energy + Delta-G solvation = -30169.955491 eV Core-core repulsion = 26328.155180 eV Total energy + Delta-G solvation = -3841.800311 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.90 seconds Orbital eigenvalues (eV) -41.80309 -40.40309 -39.17106 -37.89134 -36.55159 -33.49259 -32.24902 -31.77941 -31.33434 -30.29179 -29.29295 -28.37499 -28.10058 -26.16021 -24.62543 -23.85867 -23.29715 -22.28146 -20.85829 -20.36600 -19.53325 -18.97174 -18.52440 -17.50198 -17.21659 -16.71193 -16.57784 -16.07684 -15.83048 -15.56445 -15.10800 -15.10144 -14.84250 -14.83061 -14.41950 -14.22656 -14.09619 -14.09043 -13.76098 -13.49392 -13.39512 -13.24333 -13.23012 -13.13868 -12.97692 -12.78350 -12.53074 -12.41890 -12.40065 -12.23672 -12.09402 -11.88496 -11.81936 -11.78368 -11.47034 -11.31248 -11.05680 -10.75513 -10.64633 -9.76672 -9.65859 -9.41940 -8.86862 -7.85753 -5.33524 0.41405 0.54526 1.41950 1.47448 1.47952 1.57739 1.90602 2.50352 2.62870 3.08441 3.25756 3.33980 3.55000 3.56978 3.67506 3.78951 3.87886 3.94236 4.03857 4.14590 4.17957 4.26499 4.26588 4.34362 4.35463 4.45482 4.56464 4.61445 4.66545 4.68580 4.73887 4.76969 4.87383 4.90034 4.98582 5.01630 5.02332 5.05075 5.13742 5.17579 5.20249 5.23145 5.24303 5.29771 5.40216 5.41988 5.61739 5.62975 5.66824 5.67506 5.74432 6.15164 6.28126 6.56131 7.09371 7.13822 7.81604 8.26041 9.18099 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020802 B = 0.002289 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.673806 B =12227.159640 C =12530.036832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.601 5.601 3 C -0.264 4.264 4 H 0.081 0.919 5 C -0.057 4.057 6 N -0.941 5.941 7 Si 0.973 3.027 8 H -0.286 1.286 9 H -0.300 1.300 10 H -0.263 1.263 11 C 0.166 3.834 12 H 0.084 0.916 13 C -0.140 4.140 14 C 0.107 3.893 15 N -0.609 5.609 16 C 0.548 3.452 17 O -0.592 6.592 18 C -0.174 4.174 19 H 0.148 0.852 20 C -0.084 4.084 21 H 0.098 0.902 22 C -0.058 4.058 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.130 4.130 26 C -0.123 4.123 27 C -0.128 4.128 28 C -0.063 4.063 29 C -0.111 4.111 30 C -0.120 4.120 31 C 0.099 3.901 32 H -0.008 1.008 33 H 0.022 0.978 34 H 0.031 0.969 35 H 0.248 0.752 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.133 0.867 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.122 0.878 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.043 0.957 49 H 0.087 0.913 50 H 0.050 0.950 51 H 0.041 0.959 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.898 -28.506 -7.488 29.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.323 5.323 3 C -0.394 4.394 4 H 0.099 0.901 5 C -0.252 4.252 6 N -0.588 5.588 7 Si 0.801 3.199 8 H -0.212 1.212 9 H -0.227 1.227 10 H -0.187 1.187 11 C 0.057 3.943 12 H 0.102 0.898 13 C -0.180 4.180 14 C -0.015 4.015 15 N -0.342 5.342 16 C 0.339 3.661 17 O -0.473 6.473 18 C -0.195 4.195 19 H 0.165 0.835 20 C -0.103 4.103 21 H 0.117 0.883 22 C -0.058 4.058 23 C -0.142 4.142 24 C -0.138 4.138 25 C -0.148 4.148 26 C -0.141 4.141 27 C -0.146 4.146 28 C -0.064 4.064 29 C -0.168 4.168 30 C -0.177 4.177 31 C -0.026 4.026 32 H 0.010 0.990 33 H 0.040 0.960 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.151 0.849 41 H 0.161 0.839 42 H 0.160 0.840 43 H 0.157 0.843 44 H 0.140 0.860 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.093 0.907 48 H 0.062 0.938 49 H 0.105 0.895 50 H 0.069 0.931 51 H 0.060 0.940 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 2.655 -28.320 -6.787 29.242 hybrid contribution -0.305 1.823 0.835 2.028 sum 2.350 -26.497 -5.951 27.258 Atomic orbital electron populations 1.20434 0.83013 0.96049 0.96946 1.44152 1.01902 1.01174 1.85023 1.19662 0.97712 0.85734 1.36261 0.90092 1.25844 0.98677 1.02095 0.98576 1.70288 1.21008 1.27323 1.40154 0.85161 0.78599 0.79460 0.76689 1.21243 1.22737 1.18744 1.21564 0.96234 0.84597 0.91880 0.89807 1.23232 1.02431 0.93476 0.98837 1.22564 1.02197 0.98082 0.78655 1.48518 1.66833 1.06135 1.12702 1.19913 0.75466 0.85611 0.85109 1.90657 1.51615 1.86394 1.18619 1.22633 1.09367 0.86532 1.00944 0.83484 1.21284 0.96088 0.94310 0.98613 0.88349 1.19069 0.97856 0.94924 0.93930 1.21233 1.00041 0.99384 0.93590 1.21434 0.96928 0.94381 1.01101 1.21487 0.99741 0.99568 0.93966 1.21384 0.98795 0.98435 0.95516 1.21128 0.98109 0.95135 1.00217 1.21769 0.89629 0.96377 0.98634 1.21450 1.01445 0.96603 0.97260 1.21404 0.98518 1.01441 0.96313 1.22454 0.99491 0.81457 0.99234 0.98981 0.95951 0.95108 0.94333 0.91603 0.87895 0.88081 0.88725 0.84929 0.83872 0.84025 0.84347 0.86021 0.90473 0.91295 0.90719 0.93801 0.89465 0.93068 0.94026 0.94963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.12 7.72 127.77 0.99 10.11 16 2 N -0.60 -29.68 2.94 -696.16 -2.05 -31.72 16 3 C -0.26 -14.20 9.62 84.03 0.81 -13.39 16 4 H 0.08 4.12 7.84 -2.91 -0.02 4.10 16 5 C -0.06 -3.20 5.04 84.86 0.43 -2.77 16 6 N -0.94 -56.88 10.72 21.65 0.23 -56.65 16 7 Si 0.97 44.95 29.58 68.60 2.03 46.98 16 8 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 9 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 10 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 11 C 0.17 6.41 3.43 46.18 0.16 6.57 16 12 H 0.08 3.13 7.92 -2.39 -0.02 3.11 16 13 C -0.14 -3.97 6.60 31.99 0.21 -3.76 16 14 C 0.11 2.40 6.68 86.86 0.58 2.98 16 15 N -0.61 -19.55 3.33 -811.78 -2.70 -22.25 16 16 C 0.55 18.14 6.73 87.65 0.59 18.73 16 17 O -0.59 -25.04 15.87 -3.02 -0.05 -25.08 16 18 C -0.17 -4.00 4.59 -11.54 -0.05 -4.05 16 19 H 0.15 2.57 4.84 -2.39 -0.01 2.56 16 20 C -0.08 -1.92 5.20 -11.51 -0.06 -1.98 16 21 H 0.10 2.77 7.57 -2.39 -0.02 2.75 16 22 C -0.06 -1.12 5.04 -19.87 -0.10 -1.22 16 23 C -0.12 -1.98 7.78 22.27 0.17 -1.81 16 24 C -0.12 -1.61 10.05 22.27 0.22 -1.39 16 25 C -0.13 -1.69 10.05 22.27 0.22 -1.47 16 26 C -0.12 -1.82 10.05 22.27 0.22 -1.59 16 27 C -0.13 -2.33 9.74 22.27 0.22 -2.11 16 28 C -0.06 -1.23 2.70 -52.16 -0.14 -1.37 16 29 C -0.11 -1.44 8.56 71.98 0.62 -0.82 16 30 C -0.12 -2.61 8.75 71.98 0.63 -1.98 16 31 C 0.10 4.02 6.51 86.73 0.56 4.59 16 32 H -0.01 -0.47 7.35 -2.39 -0.02 -0.49 16 33 H 0.02 1.20 7.18 -2.39 -0.02 1.18 16 34 H 0.03 1.34 6.19 -2.39 -0.01 1.32 16 35 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 36 H 0.07 2.04 6.20 -2.39 -0.01 2.03 16 37 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.10 1.66 6.93 -2.39 -0.02 1.65 16 39 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.13 1.71 5.19 -2.91 -0.02 1.70 16 41 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 42 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 43 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 44 H 0.12 2.09 8.06 -2.91 -0.02 2.06 16 45 H 0.08 0.83 8.09 -2.39 -0.02 0.82 16 46 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.07 0.81 5.94 -2.39 -0.01 0.80 16 48 H 0.04 1.17 7.45 -2.38 -0.02 1.16 16 49 H 0.09 1.44 8.04 -2.39 -0.02 1.42 16 50 H 0.05 1.21 8.02 -2.39 -0.02 1.19 16 51 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 52 H 0.03 1.55 7.01 -2.39 -0.02 1.54 16 Total: -1.00 -73.32 403.47 4.65 -68.67 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.90 Total: 16.80 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 6.28 Total: 3.27 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -4.51 Total: -110.63 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.05 Total: -25.08 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -73.32 4.65 -68.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971541621.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.526 kcal (2) G-P(sol) polarization free energy of solvation -73.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.90 seconds