Wall clock time and date at job start Wed Apr 1 2020 03:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47478 * 2 1 4 4 C 1.38258 * 119.99584 * 264.99534 * 3 2 1 5 5 C 1.38217 * 119.99532 * 179.97438 * 4 3 2 6 6 C 1.38256 * 120.00446 * 359.96397 * 5 4 3 7 7 C 1.38213 * 119.99993 * 0.02562 * 6 5 4 8 8 C 1.38211 * 120.00350 * 84.71955 * 3 2 1 9 9 C 1.50701 * 119.99720 * 359.97438 * 8 3 2 10 10 H 1.08998 * 115.55511 * 334.33023 * 9 8 3 11 11 C 1.53008 * 117.49693 * 188.61956 * 9 8 3 12 12 C 1.53003 * 60.00110 * 252.51285 * 11 9 8 13 13 H 1.09002 * 117.49545 * 107.48940 * 12 11 9 14 14 C 1.50693 * 117.51777 * 252.52133 * 12 11 9 15 15 O 1.21279 * 120.00651 * 68.62957 * 14 12 11 16 16 N 1.34786 * 120.00056 * 248.62953 * 14 12 11 17 17 C 1.47424 * 125.64253 * 359.69155 * 16 14 12 18 18 C 1.55134 * 104.71837 * 155.81729 * 17 16 14 19 19 C 1.55156 * 101.48481 * 37.29742 * 18 17 16 20 20 H 1.08992 * 110.72122 * 82.69514 * 19 18 17 21 21 N 1.46502 * 110.71928 * 205.96750 * 19 18 17 22 22 C 1.46505 * 119.99896 * 53.51991 * 21 19 18 23 23 C 1.36929 * 120.00389 * 233.52384 * 21 19 18 24 24 H 1.07999 * 119.99975 * 21.69863 * 23 21 19 25 25 C 1.38815 * 120.00335 * 201.71076 * 23 21 19 26 26 N 1.31620 * 119.99678 * 13.68505 * 25 23 21 27 27 Si 1.86796 * 120.00073 * 193.69667 * 25 23 21 28 28 H 1.48505 * 109.47004 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47565 * 119.99432 * 27 25 23 30 30 H 1.48503 * 109.47060 * 239.99685 * 27 25 23 31 31 C 1.47019 * 125.65020 * 179.97438 * 16 14 12 32 32 H 1.08996 * 109.47255 * 300.00567 * 1 2 3 33 33 H 1.09000 * 109.46711 * 60.00203 * 1 2 3 34 34 H 1.08999 * 109.47141 * 180.02562 * 1 2 3 35 35 H 1.09000 * 109.47718 * 239.99312 * 2 1 3 36 36 H 1.09000 * 109.46711 * 119.99797 * 2 1 3 37 37 H 1.07995 * 120.00454 * 359.97438 * 4 3 2 38 38 H 1.08003 * 119.99517 * 179.97438 * 5 4 3 39 39 H 1.07994 * 120.00382 * 179.97438 * 6 5 4 40 40 H 1.07995 * 120.00489 * 179.97438 * 7 6 5 41 41 H 1.08993 * 117.49837 * 0.02562 * 11 9 8 42 42 H 1.09001 * 117.49717 * 145.02200 * 11 9 8 43 43 H 1.09001 * 110.36797 * 274.74601 * 17 16 14 44 44 H 1.09000 * 110.36993 * 37.06905 * 17 16 14 45 45 H 1.08996 * 111.19336 * 279.19135 * 18 17 16 46 46 H 1.09007 * 110.93797 * 155.28643 * 18 17 16 47 47 H 1.09000 * 109.47410 * 94.46982 * 22 21 19 48 48 H 1.08999 * 109.46942 * 214.47208 * 22 21 19 49 49 H 1.09003 * 109.47286 * 334.47303 * 22 21 19 50 50 H 0.97002 * 119.99330 * 179.97438 * 26 25 23 51 51 H 1.08998 * 109.88536 * 300.44278 * 31 16 14 52 52 H 1.09003 * 109.87720 * 61.60612 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3613 2.0376 -1.1928 5 6 2.8216 3.3409 -1.1929 6 6 2.9524 4.0279 -0.0003 7 6 2.6234 3.4114 1.1922 8 6 2.1590 2.1091 1.1918 9 6 1.7940 1.4389 2.4913 10 1 1.0626 0.6342 2.4162 11 6 1.7615 2.3085 3.7499 12 6 2.8928 1.2986 3.5468 13 1 3.8796 1.6911 3.3012 14 6 2.8810 0.0585 4.4028 15 8 2.0217 -0.7820 4.2411 16 7 3.8255 -0.1168 5.3483 17 6 4.9268 0.8170 5.6460 18 6 5.3123 0.5152 7.1181 19 6 5.1439 -1.0262 7.1718 20 1 6.0320 -1.5250 6.7840 21 7 4.8542 -1.4687 8.5380 22 6 3.7413 -0.8718 9.2808 23 6 5.6235 -2.4400 9.1208 24 1 6.6201 -2.6331 8.7522 25 6 5.1224 -3.1767 10.1854 26 7 3.8365 -3.1401 10.4635 27 14 6.2733 -4.2196 11.2233 28 1 7.6597 -4.0897 10.7073 29 1 6.2242 -3.7570 12.6335 30 1 5.8508 -5.6415 11.1537 31 6 3.9315 -1.2736 6.2495 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 2.2586 1.5012 -2.1245 38 1 3.0790 3.8226 -2.1246 39 1 3.3125 5.0461 -0.0003 40 1 2.7260 3.9478 2.1238 41 1 2.0036 3.3653 3.6378 42 1 1.0084 2.0760 4.5029 43 1 5.7722 0.6299 4.9840 44 1 4.5872 1.8480 5.5470 45 1 4.6313 1.0071 7.8125 46 1 6.3449 0.8025 7.3170 47 1 2.8515 -1.4900 9.1611 48 1 4.0014 -0.8101 10.3375 49 1 3.5429 0.1287 8.8964 50 1 3.4863 -3.6552 11.2071 51 1 3.0237 -1.3631 6.8462 52 1 4.0871 -2.1828 5.6688 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972188938.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:27 Heat of formation + Delta-G solvation = 37.694892 kcal Electronic energy + Delta-G solvation = -29719.975483 eV Core-core repulsion = 25878.645239 eV Total energy + Delta-G solvation = -3841.330244 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.53013 -39.51137 -37.75368 -36.17573 -34.78394 -34.39693 -31.67271 -30.79643 -29.71175 -29.53556 -28.11065 -26.07433 -24.99323 -24.16743 -23.96892 -22.61066 -22.28980 -21.26060 -20.33628 -19.22420 -18.79744 -17.49164 -17.05073 -16.56125 -16.03204 -15.76306 -15.26298 -15.07987 -14.80915 -14.55904 -14.07075 -13.87916 -13.69417 -13.41924 -13.41213 -13.28506 -13.10396 -12.64731 -12.50420 -12.19381 -12.15507 -12.06471 -11.97307 -11.80679 -11.59323 -11.51651 -11.07805 -11.00827 -10.94087 -10.81960 -10.72841 -10.57909 -10.54041 -10.45470 -10.26848 -9.89118 -9.82565 -9.62083 -9.00359 -8.68053 -8.59282 -8.28253 -6.84480 -5.77644 -3.24122 1.06557 1.15884 2.65740 3.15811 3.35652 3.42649 3.44717 3.46360 3.91755 4.31262 4.45352 4.52821 4.59147 4.66041 4.71151 4.78268 4.87695 4.97596 5.00359 5.04239 5.20770 5.26894 5.28763 5.30050 5.32084 5.38705 5.47798 5.53197 5.60617 5.68147 5.75852 5.79130 5.80895 5.83561 5.88464 5.88817 5.97491 5.99786 6.10074 6.27904 6.31505 6.33017 6.36699 6.49107 6.53980 6.67696 6.77615 6.82120 6.86370 7.33071 7.69597 7.77104 7.83698 8.32433 8.42222 9.17031 9.79671 10.28158 11.27027 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.022833 B = 0.002122 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.004800 B =13193.318769 C =13661.027063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.068 4.068 4 C -0.117 4.117 5 C -0.122 4.122 6 C -0.124 4.124 7 C -0.117 4.117 8 C -0.048 4.048 9 C -0.088 4.088 10 H 0.130 0.870 11 C -0.145 4.145 12 C -0.169 4.169 13 H 0.122 0.878 14 C 0.552 3.448 15 O -0.545 6.545 16 N -0.608 5.608 17 C 0.102 3.898 18 C -0.153 4.153 19 C 0.173 3.827 20 H 0.078 0.922 21 N -0.586 5.586 22 C 0.160 3.840 23 C -0.260 4.260 24 H 0.071 0.929 25 C 0.003 3.997 26 N -0.904 5.904 27 Si 0.907 3.093 28 H -0.278 1.278 29 H -0.289 1.289 30 H -0.290 1.290 31 C 0.087 3.913 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.030 0.970 48 H 0.045 0.955 49 H 0.002 0.998 50 H 0.253 0.747 51 H 0.073 0.927 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.265 15.532 -21.118 26.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.068 4.068 4 C -0.135 4.135 5 C -0.141 4.141 6 C -0.142 4.142 7 C -0.135 4.135 8 C -0.048 4.048 9 C -0.107 4.107 10 H 0.147 0.853 11 C -0.182 4.182 12 C -0.190 4.190 13 H 0.140 0.860 14 C 0.340 3.660 15 O -0.423 6.423 16 N -0.341 5.341 17 C -0.022 4.022 18 C -0.193 4.193 19 C 0.062 3.938 20 H 0.096 0.904 21 N -0.306 5.306 22 C 0.016 3.984 23 C -0.390 4.390 24 H 0.089 0.911 25 C -0.196 4.196 26 N -0.548 5.548 27 Si 0.737 3.263 28 H -0.203 1.203 29 H -0.216 1.216 30 H -0.217 1.217 31 C -0.038 4.038 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.142 0.858 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.048 0.952 48 H 0.064 0.936 49 H 0.021 0.979 50 H 0.063 0.937 51 H 0.091 0.909 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.865 14.967 -21.054 25.991 hybrid contribution 0.639 -0.558 0.585 1.031 sum -2.227 14.409 -20.469 25.131 Atomic orbital electron populations 1.21739 0.94566 1.01971 1.02028 1.20608 0.96400 0.92513 1.03348 1.19747 0.98476 0.96247 0.92365 1.21025 0.99976 0.95181 0.97367 1.21119 1.00063 0.94822 0.98048 1.21082 1.00698 0.99884 0.92498 1.21061 0.99542 0.94532 0.98369 1.18996 0.99278 0.93719 0.92822 1.21144 1.00672 1.01820 0.87024 0.85267 1.23122 0.99364 0.96263 0.99487 1.22314 0.96703 0.98005 1.01988 0.86002 1.19207 0.80607 0.86659 0.79567 1.90688 1.37236 1.45007 1.69402 1.48463 1.27706 1.23101 1.34849 1.22365 0.89227 0.93126 0.97445 1.23383 1.01960 1.00090 0.93883 1.21355 0.94590 0.91937 0.85910 0.90381 1.43946 1.35432 1.43130 1.08122 1.20811 0.90658 0.91714 0.95258 1.19269 0.95127 1.11486 1.13083 0.91082 1.25047 0.95574 0.98229 1.00730 1.70099 1.10768 1.43561 1.30386 0.86154 0.80142 0.79824 0.80211 1.20261 1.21577 1.21701 1.22947 1.02227 0.87078 0.91503 0.92301 0.92812 0.92201 0.91174 0.90122 0.86133 0.86246 0.86158 0.85849 0.87529 0.87683 0.91701 0.91232 0.90324 0.90424 0.95171 0.93600 0.97934 0.93662 0.90913 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.73 37.16 0.36 -0.94 16 2 C -0.09 -0.89 5.38 -27.88 -0.15 -1.04 16 3 C -0.07 -0.69 5.13 -104.63 -0.54 -1.23 16 4 C -0.12 -1.04 9.68 -39.58 -0.38 -1.42 16 5 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 6 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 7 C -0.12 -1.06 9.30 -39.58 -0.37 -1.42 16 8 C -0.05 -0.50 5.61 -104.62 -0.59 -1.08 16 9 C -0.09 -1.00 4.65 -91.76 -0.43 -1.42 16 10 H 0.13 1.66 5.44 -51.93 -0.28 1.38 16 11 C -0.15 -1.48 9.56 -26.73 -0.26 -1.73 16 12 C -0.17 -2.03 4.89 -91.77 -0.45 -2.48 16 13 H 0.12 1.28 7.77 -51.93 -0.40 0.88 16 14 C 0.55 9.07 7.63 -10.98 -0.08 8.99 16 15 O -0.55 -10.98 16.58 5.56 0.09 -10.89 16 16 N -0.61 -9.97 3.33 -170.38 -0.57 -10.54 16 17 C 0.10 1.33 6.49 -2.41 -0.02 1.31 16 18 C -0.15 -2.37 6.60 -24.46 -0.16 -2.53 16 19 C 0.17 3.38 3.44 -66.10 -0.23 3.15 16 20 H 0.08 1.51 7.93 -51.93 -0.41 1.10 16 21 N -0.59 -14.21 2.93 -171.39 -0.50 -14.71 16 22 C 0.16 3.86 7.82 59.85 0.47 4.33 16 23 C -0.26 -6.95 9.63 -15.06 -0.15 -7.10 16 24 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 25 C 0.00 0.08 5.08 -17.43 -0.09 -0.01 16 26 N -0.90 -26.14 10.68 55.49 0.59 -25.55 16 27 Si 0.91 21.54 29.57 -169.99 -5.03 16.52 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 30 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 31 C 0.09 1.71 6.51 -3.07 -0.02 1.69 16 32 H 0.06 0.56 7.14 -51.93 -0.37 0.19 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16 36 H 0.08 0.92 6.96 -51.93 -0.36 0.56 16 37 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 39 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.12 0.92 6.03 -52.49 -0.32 0.60 16 41 H 0.11 0.83 6.18 -51.93 -0.32 0.51 16 42 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.75 7.66 -51.93 -0.40 0.35 16 45 H 0.08 1.30 6.05 -51.93 -0.31 0.98 16 46 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.03 0.80 7.32 -51.93 -0.38 0.42 16 48 H 0.05 1.19 7.23 -51.93 -0.38 0.81 16 49 H 0.00 0.05 6.02 -51.93 -0.31 -0.26 16 50 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 51 H 0.07 1.65 7.11 -51.93 -0.37 1.28 16 52 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 407.70 15.07 6.14 6.14 Total: -1.00 -31.54 407.70 -11.52 -43.06 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -8.39 Total: 1.70 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -3.86 Total: -5.73 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.48 Total: -50.80 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.54 -11.52 -43.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972188938.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.757 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds