Wall clock time and date at job start Wed Apr 1 2020 03:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50695 * 109.47263 * 2 1 4 4 C 1.38263 * 119.99860 * 265.18393 * 3 2 1 5 5 C 1.38207 * 120.00110 * 180.21111 * 4 3 2 6 6 C 1.38256 * 120.00228 * 359.85553 * 5 4 3 7 7 C 1.38216 * 119.99946 * 359.95562 * 6 5 4 8 8 C 1.38214 * 120.00467 * 84.99228 * 3 2 1 9 9 C 1.50702 * 119.99819 * 0.02562 * 8 3 2 10 10 H 1.09001 * 115.56003 * 334.03527 * 9 8 3 11 11 C 1.53076 * 117.49158 * 188.32164 * 9 8 3 12 12 C 1.52995 * 59.98509 * 252.51608 * 11 9 8 13 13 H 1.09000 * 117.50215 * 107.50245 * 12 11 9 14 14 C 1.50705 * 117.49880 * 252.50056 * 12 11 9 15 15 O 1.21280 * 119.99980 * 68.75125 * 14 12 11 16 16 N 1.34776 * 120.00101 * 248.74755 * 14 12 11 17 17 C 1.47290 * 125.79156 * 0.02562 * 16 14 12 18 18 C 1.54327 * 107.30447 * 178.92510 * 17 16 14 19 19 C 1.55161 * 102.93921 * 337.81598 * 18 17 16 20 20 H 1.08998 * 111.03669 * 277.41379 * 19 18 17 21 21 N 1.46498 * 111.00285 * 153.57925 * 19 18 17 22 22 C 1.46500 * 120.00024 * 307.80449 * 21 19 18 23 23 C 1.36939 * 120.00229 * 127.79973 * 21 19 18 24 24 H 1.08000 * 120.00070 * 328.50563 * 23 21 19 25 25 C 1.38812 * 120.00045 * 148.50236 * 23 21 19 26 26 N 1.31620 * 120.00172 * 153.83335 * 25 23 21 27 27 Si 1.86799 * 120.00076 * 333.83728 * 25 23 21 28 28 H 1.48496 * 109.47304 * 94.88969 * 27 25 23 29 29 H 1.48501 * 109.47131 * 214.89481 * 27 25 23 30 30 H 1.48502 * 109.47256 * 334.89187 * 27 25 23 31 31 C 1.47425 * 125.64610 * 179.97438 * 16 14 12 32 32 H 1.09002 * 109.47201 * 300.01130 * 1 2 3 33 33 H 1.09001 * 109.46755 * 60.00080 * 1 2 3 34 34 H 1.08996 * 109.47462 * 180.02562 * 1 2 3 35 35 H 1.08993 * 109.47134 * 239.99024 * 2 1 3 36 36 H 1.09001 * 109.46506 * 119.99430 * 2 1 3 37 37 H 1.08002 * 119.99607 * 0.03797 * 4 3 2 38 38 H 1.08001 * 120.00361 * 179.82977 * 5 4 3 39 39 H 1.08001 * 120.00300 * 179.97438 * 6 5 4 40 40 H 1.07997 * 120.00372 * 180.02562 * 7 6 5 41 41 H 1.09004 * 117.50553 * 145.03444 * 11 9 8 42 42 H 1.08996 * 117.49531 * 0.02562 * 11 9 8 43 43 H 1.09000 * 109.85732 * 59.49981 * 17 16 14 44 44 H 1.09004 * 109.99996 * 298.42612 * 17 16 14 45 45 H 1.09000 * 110.71708 * 219.45477 * 18 17 16 46 46 H 1.08999 * 110.72240 * 96.17722 * 18 17 16 47 47 H 1.08996 * 109.47804 * 95.54186 * 22 21 19 48 48 H 1.09003 * 109.47216 * 215.54929 * 22 21 19 49 49 H 1.08999 * 109.46891 * 335.54215 * 22 21 19 50 50 H 0.96996 * 120.00479 * 180.02562 * 26 25 23 51 51 H 1.08996 * 110.36679 * 85.26707 * 31 16 14 52 52 H 1.08995 * 110.37084 * 323.04900 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3576 2.0390 -1.1932 5 6 2.8225 3.3405 -1.1929 6 6 2.9595 4.0254 0.0003 7 6 2.6307 3.4088 1.1928 8 6 2.1643 2.1072 1.1923 9 6 1.8063 1.4347 2.4926 10 1 1.0714 0.6328 2.4205 11 6 1.7861 2.3012 3.7543 12 6 2.9120 1.2877 3.5398 13 1 3.8985 1.6771 3.2881 14 6 2.9018 0.0454 4.3929 15 8 2.0392 -0.7922 4.2340 16 7 3.8512 -0.1349 5.3323 17 6 4.9531 0.7952 5.6329 18 6 5.7654 0.1843 6.7942 19 6 4.7483 -0.7796 7.4604 20 1 4.0932 -0.2435 8.1471 21 7 5.4358 -1.8775 8.1445 22 6 6.4318 -2.6778 7.4277 23 6 5.1476 -2.1557 9.4540 24 1 4.8557 -1.3601 10.1235 25 6 5.2306 -3.4603 9.9210 26 7 5.4681 -3.6894 11.1951 27 14 5.0055 -4.8908 8.7410 28 1 6.3335 -5.3511 8.2619 29 1 4.3177 -6.0058 9.4403 30 1 4.1861 -4.4527 7.5825 31 6 3.9595 -1.2974 6.2324 32 1 -0.3634 0.5140 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 1.8933 -0.5139 -0.8898 36 1 1.8933 -0.5138 0.8901 37 1 2.2510 1.5038 -2.1252 38 1 3.0791 3.8226 -2.1246 39 1 3.3232 5.0424 0.0006 40 1 2.7373 3.9438 2.1248 41 1 1.0379 2.0694 4.5123 42 1 2.0314 3.3574 3.6433 43 1 4.5498 1.7628 5.9313 44 1 5.5906 0.9136 4.7567 45 1 6.0789 0.9585 7.4946 46 1 6.6266 -0.3658 6.4150 47 1 7.4280 -2.2849 7.6304 48 1 6.3747 -3.7137 7.7624 49 1 6.2335 -2.6306 6.3570 50 1 5.5264 -4.6010 11.5214 51 1 4.5051 -2.1052 5.7448 52 1 2.9688 -1.6375 6.5337 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972188940.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:33 Heat of formation + Delta-G solvation = 43.983981 kcal Electronic energy + Delta-G solvation = -29791.538468 eV Core-core repulsion = 25950.480939 eV Total energy + Delta-G solvation = -3841.057529 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -40.59811 -39.60732 -37.90649 -36.27157 -34.99624 -34.44068 -31.87776 -30.89327 -30.20267 -29.58416 -28.44036 -26.31773 -25.15088 -24.24420 -24.02470 -22.80937 -22.25964 -21.30689 -20.38435 -19.46671 -18.88783 -17.55902 -17.10332 -16.63827 -16.19048 -15.96378 -15.32566 -15.26890 -15.14768 -14.53109 -14.10923 -14.04122 -13.77844 -13.71616 -13.44652 -13.43140 -13.04135 -12.79386 -12.60547 -12.43477 -12.36211 -12.27520 -12.06112 -12.03746 -11.98042 -11.70502 -11.63233 -11.12624 -11.07433 -10.92583 -10.83833 -10.76377 -10.61863 -10.56448 -10.18862 -9.99481 -9.75023 -9.55878 -9.04513 -8.72858 -8.55421 -8.42551 -7.02078 -6.06906 -3.42169 1.02261 1.11887 2.55508 3.03364 3.28270 3.39702 3.46334 3.51002 3.84896 4.24816 4.46916 4.47550 4.54177 4.59759 4.64497 4.73953 4.75197 4.81415 4.93288 4.97090 5.06744 5.16172 5.20532 5.24364 5.25934 5.29170 5.34323 5.37496 5.46159 5.63366 5.64870 5.70106 5.72414 5.75362 5.76804 5.83226 5.86022 5.92644 6.05329 6.08917 6.18203 6.24145 6.26785 6.27134 6.38889 6.44453 6.45412 6.57405 6.65491 6.73544 6.74564 7.70236 7.91236 8.26181 8.29781 8.87264 9.63297 9.99190 11.08419 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019907 B = 0.002315 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.205779 B =12092.493403 C =12737.978533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.068 4.068 4 C -0.117 4.117 5 C -0.122 4.122 6 C -0.123 4.123 7 C -0.117 4.117 8 C -0.049 4.049 9 C -0.088 4.088 10 H 0.129 0.871 11 C -0.144 4.144 12 C -0.170 4.170 13 H 0.123 0.877 14 C 0.554 3.446 15 O -0.545 6.545 16 N -0.610 5.610 17 C 0.105 3.895 18 C -0.150 4.150 19 C 0.172 3.828 20 H 0.087 0.913 21 N -0.595 5.595 22 C 0.109 3.891 23 C -0.274 4.274 24 H 0.084 0.916 25 C 0.036 3.964 26 N -0.893 5.893 27 Si 0.879 3.121 28 H -0.286 1.286 29 H -0.302 1.302 30 H -0.271 1.271 31 C 0.081 3.919 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.023 0.977 48 H 0.040 0.960 49 H 0.035 0.965 50 H 0.264 0.736 51 H 0.064 0.936 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.730 16.023 -23.759 29.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.068 4.068 4 C -0.135 4.135 5 C -0.140 4.140 6 C -0.141 4.141 7 C -0.135 4.135 8 C -0.049 4.049 9 C -0.106 4.106 10 H 0.147 0.853 11 C -0.181 4.181 12 C -0.191 4.191 13 H 0.140 0.860 14 C 0.342 3.658 15 O -0.423 6.423 16 N -0.343 5.343 17 C -0.019 4.019 18 C -0.190 4.190 19 C 0.063 3.937 20 H 0.106 0.894 21 N -0.316 5.316 22 C -0.035 4.035 23 C -0.402 4.402 24 H 0.102 0.898 25 C -0.165 4.165 26 N -0.534 5.534 27 Si 0.710 3.290 28 H -0.214 1.214 29 H -0.230 1.230 30 H -0.196 1.196 31 C -0.043 4.043 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.099 0.901 46 H 0.094 0.906 47 H 0.041 0.959 48 H 0.058 0.942 49 H 0.054 0.946 50 H 0.074 0.926 51 H 0.082 0.918 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.206 15.432 -23.706 28.761 hybrid contribution 0.114 -0.894 -0.662 1.119 sum -5.091 14.538 -24.368 28.828 Atomic orbital electron populations 1.21739 0.94554 1.01963 1.02048 1.20606 0.96410 0.92520 1.03327 1.19746 0.98498 0.96230 0.92372 1.21027 0.99949 0.95192 0.97373 1.21123 0.99967 0.94841 0.98072 1.21089 1.00654 0.99914 0.92488 1.21061 0.99511 0.94527 0.98386 1.18988 0.99393 0.93742 0.92789 1.21152 1.00545 1.01815 0.87111 0.85276 1.23135 0.99313 0.96288 0.99411 1.22312 0.96794 0.97858 1.02102 0.85958 1.19208 0.80468 0.86667 0.79449 1.90692 1.37176 1.45314 1.69100 1.48469 1.27613 1.22850 1.35375 1.22083 0.88297 0.93093 0.98408 1.23145 0.99153 1.00314 0.96346 1.21588 0.91551 0.89435 0.91151 0.89444 1.44044 1.41561 1.35670 1.10338 1.21340 0.92263 0.95482 0.94447 1.18797 1.45108 0.93158 0.83157 0.89823 1.25326 0.98422 0.97460 0.95341 1.69900 1.48243 1.20764 1.14452 0.86965 0.77551 0.82742 0.81731 1.21422 1.23012 1.19582 1.23148 1.02068 0.87943 0.91167 0.92313 0.92775 0.92215 0.91164 0.90176 0.86119 0.86211 0.86120 0.85830 0.87653 0.87466 0.91494 0.92005 0.90085 0.90620 0.95886 0.94239 0.94599 0.92572 0.91817 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.74 37.16 0.36 -0.89 16 2 C -0.09 -0.85 5.38 -27.88 -0.15 -1.00 16 3 C -0.07 -0.67 5.13 -104.62 -0.54 -1.20 16 4 C -0.12 -1.00 9.68 -39.58 -0.38 -1.39 16 5 C -0.12 -0.96 10.05 -39.59 -0.40 -1.35 16 6 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 7 C -0.12 -1.01 9.30 -39.58 -0.37 -1.38 16 8 C -0.05 -0.49 5.61 -104.62 -0.59 -1.07 16 9 C -0.09 -0.94 4.66 -91.73 -0.43 -1.37 16 10 H 0.13 1.58 5.48 -51.93 -0.28 1.30 16 11 C -0.14 -1.36 9.57 -26.69 -0.26 -1.62 16 12 C -0.17 -1.92 5.17 -91.77 -0.47 -2.40 16 13 H 0.12 1.22 7.76 -51.93 -0.40 0.81 16 14 C 0.55 8.61 7.64 -10.98 -0.08 8.53 16 15 O -0.54 -10.43 16.51 5.56 0.09 -10.34 16 16 N -0.61 -9.40 3.34 -170.33 -0.57 -9.97 16 17 C 0.10 1.28 6.31 -2.92 -0.02 1.26 16 18 C -0.15 -2.16 6.50 -24.89 -0.16 -2.33 16 19 C 0.17 3.22 3.53 -65.80 -0.23 2.98 16 20 H 0.09 1.68 7.96 -51.93 -0.41 1.26 16 21 N -0.59 -13.59 2.62 -171.06 -0.45 -14.03 16 22 C 0.11 2.31 8.33 59.85 0.50 2.81 16 23 C -0.27 -7.45 9.89 -15.06 -0.15 -7.60 16 24 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 25 C 0.04 1.01 5.29 -17.43 -0.09 0.92 16 26 N -0.89 -26.83 13.97 55.49 0.78 -26.06 16 27 Si 0.88 22.24 25.07 -169.99 -4.26 17.98 16 28 H -0.29 -7.00 6.62 56.52 0.37 -6.62 16 29 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 30 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 31 C 0.08 1.49 6.46 -2.55 -0.02 1.48 16 32 H 0.06 0.54 7.17 -51.93 -0.37 0.17 16 33 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.57 8.05 -51.93 -0.42 0.15 16 36 H 0.08 0.89 6.95 -51.93 -0.36 0.52 16 37 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 38 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 39 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.12 0.87 6.02 -52.49 -0.32 0.55 16 41 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.11 0.76 6.18 -51.93 -0.32 0.44 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.65 8.07 -51.93 -0.42 0.23 16 45 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 46 H 0.08 1.11 6.98 -51.93 -0.36 0.75 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.04 0.92 2.55 -51.93 -0.13 0.79 16 49 H 0.04 0.66 6.37 -51.93 -0.33 0.33 16 50 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 51 H 0.06 1.23 6.43 -51.93 -0.33 0.90 16 52 H 0.07 1.53 8.03 -51.93 -0.42 1.11 16 LS Contribution 404.01 15.07 6.09 6.09 Total: -1.00 -32.14 404.01 -10.47 -42.61 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -8.28 Total: 0.71 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -3.87 Total: -6.99 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: -0.24 Total: -50.06 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.09 Total: -10.34 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.26 Total: 17.98 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.14 -10.47 -42.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972188940.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.590 kcal (2) G-P(sol) polarization free energy of solvation -32.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds