Wall clock time and date at job start Wed Apr 1 2020 02:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 110.77902 * 2 1 4 4 C 1.54317 * 110.72206 * 236.76071 * 2 1 3 5 5 N 1.47029 * 107.26855 * 263.82530 * 4 2 1 6 6 C 1.36937 * 125.64379 * 181.02257 * 5 4 2 7 7 H 1.07997 * 120.00341 * 0.02562 * 6 5 4 8 8 C 1.38819 * 119.99922 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99480 * 359.97438 * 8 6 5 10 10 Si 1.86791 * 120.00318 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47799 * 89.99370 * 10 8 6 12 12 H 1.48498 * 109.47245 * 209.99883 * 10 8 6 13 13 H 1.48502 * 109.47142 * 329.99398 * 10 8 6 14 14 C 1.47415 * 108.70445 * 1.06009 * 5 4 2 15 15 C 1.54908 * 104.83306 * 335.87166 * 14 5 4 16 16 H 1.08999 * 111.00594 * 155.12410 * 15 14 5 17 17 N 1.46499 * 111.00155 * 278.93389 * 15 14 5 18 18 C 1.34781 * 120.00068 * 273.54718 * 17 15 14 19 19 O 1.21284 * 119.99919 * 5.13526 * 18 17 15 20 20 C 1.50698 * 119.99986 * 185.14327 * 18 17 15 21 21 H 1.09001 * 109.25374 * 23.64521 * 20 18 17 22 22 C 1.52729 * 109.22535 * 143.09879 * 20 18 17 23 23 C 1.53322 * 108.38598 * 171.35724 * 22 20 18 24 24 C 1.52743 * 108.38223 * 290.11367 * 23 22 20 25 25 C 1.50633 * 110.58530 * 51.09149 * 24 23 22 26 26 C 1.38908 * 117.75327 * 162.46288 * 25 24 23 27 27 C 1.37936 * 120.54718 * 179.59904 * 26 25 24 28 28 C 1.38267 * 119.77081 * 0.07549 * 27 26 25 29 29 C 1.37929 * 119.77029 * 0.09760 * 28 27 26 30 30 C 1.37666 * 122.56817 * 342.29183 * 25 24 23 31 31 H 1.09003 * 109.47060 * 296.76068 * 1 2 3 32 32 H 1.08998 * 109.47056 * 56.76398 * 1 2 3 33 33 H 1.09005 * 109.46622 * 176.76495 * 1 2 3 34 34 H 1.08995 * 109.46933 * 183.24078 * 3 2 1 35 35 H 1.09001 * 109.46536 * 303.23801 * 3 2 1 36 36 H 1.08999 * 109.47158 * 63.23491 * 3 2 1 37 37 H 1.09003 * 109.88113 * 144.41283 * 4 2 1 38 38 H 1.08991 * 110.01168 * 23.31657 * 4 2 1 39 39 H 0.97003 * 119.99785 * 179.97438 * 9 8 6 40 40 H 1.08998 * 110.36885 * 217.02921 * 14 5 4 41 41 H 1.09005 * 110.36627 * 94.70490 * 14 5 4 42 42 H 0.96997 * 120.00401 * 93.54706 * 17 15 14 43 43 H 1.08998 * 109.68143 * 291.07849 * 22 20 18 44 44 H 1.08998 * 109.68428 * 51.59599 * 22 20 18 45 45 H 1.09004 * 109.68466 * 49.83381 * 23 22 20 46 46 H 1.09001 * 109.68298 * 170.35424 * 23 22 20 47 47 H 1.08995 * 109.25335 * 171.37317 * 24 23 22 48 48 H 1.09000 * 109.25370 * 290.84183 * 24 23 22 49 49 H 1.08005 * 119.72760 * 359.65112 * 26 25 24 50 50 H 1.08001 * 120.11430 * 180.09803 * 27 26 25 51 51 H 1.08000 * 120.11380 * 180.37472 * 28 27 26 52 52 H 1.08001 * 119.72986 * 179.90786 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7911 -1.2072 5 7 2.3717 -2.1531 -0.7388 6 6 2.8934 -3.1636 -1.5016 7 1 3.1235 -2.9909 -2.5425 8 6 3.1264 -4.4102 -0.9369 9 7 2.8463 -4.6205 0.3319 10 14 3.8386 -5.7885 -1.9771 11 1 5.3211 -5.7519 -1.8996 12 1 3.3486 -7.0953 -1.4699 13 1 3.4123 -5.6142 -3.3889 14 6 2.0127 -2.2508 0.6876 15 6 2.0790 -0.7954 1.2138 16 1 1.4401 -0.6663 2.0875 17 7 3.4595 -0.4081 1.5145 18 6 3.9888 -0.6837 2.7230 19 8 3.3561 -1.3337 3.5282 20 6 5.3666 -0.1843 3.0738 21 1 5.6011 0.6849 2.4593 22 6 5.3959 0.2176 4.5469 23 6 6.8483 0.5145 4.9384 24 6 7.6230 -0.8018 4.9493 25 6 7.4128 -1.5506 3.6593 26 6 8.3125 -2.5609 3.3439 27 6 8.1697 -3.2890 2.1811 28 6 7.1236 -3.0107 1.3209 29 6 6.2312 -2.0055 1.6305 30 6 6.3732 -1.2714 2.8012 31 1 -0.3633 0.4627 0.9176 32 1 -0.3633 0.5632 -0.8595 33 1 -0.3633 -1.0261 -0.0580 34 1 3.1609 1.4062 -0.0581 35 1 1.6750 1.9700 -0.8596 36 1 1.7690 1.9344 0.9175 37 1 2.9869 -0.3206 -1.5774 38 1 1.3284 -0.8257 -1.9995 39 1 3.0088 -5.4916 0.7265 40 1 2.7294 -2.8786 1.2171 41 1 1.0040 -2.6487 0.7986 42 1 3.9926 0.0468 0.8439 43 1 4.7859 1.1084 4.6966 44 1 5.0100 -0.5984 5.1579 45 1 7.2923 1.1958 4.2125 46 1 6.8762 0.9658 5.9303 47 1 8.6853 -0.5926 5.0744 48 1 7.2772 -1.4155 5.7810 49 1 9.1302 -2.7787 4.0151 50 1 8.8723 -4.0741 1.9436 51 1 7.0030 -3.5813 0.4119 52 1 5.4152 -1.7877 0.9574 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974753679.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:22 Heat of formation + Delta-G solvation = 0.483093 kcal Electronic energy + Delta-G solvation = -32053.412004 eV Core-core repulsion = 28210.468135 eV Total energy + Delta-G solvation = -3842.943869 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.49614 -39.15239 -37.73421 -35.70748 -33.80547 -33.11382 -32.26190 -30.68013 -30.04891 -28.91978 -28.00694 -26.79662 -25.59514 -24.35988 -23.20235 -22.52549 -22.09633 -20.50924 -19.76265 -19.20676 -18.54931 -16.92979 -16.61815 -16.30472 -15.76852 -15.26724 -15.19562 -14.62851 -14.26965 -13.99973 -13.96268 -13.72175 -13.64670 -13.36988 -13.15952 -13.00223 -12.78833 -12.58168 -12.32771 -12.06350 -11.97312 -11.87949 -11.69954 -11.51482 -11.28429 -11.22066 -11.13876 -10.98598 -10.90997 -10.76669 -10.54207 -10.37637 -10.21924 -10.19875 -9.93033 -9.78089 -9.66842 -9.30839 -8.65298 -8.43674 -8.29472 -8.28042 -6.78283 -5.59674 -3.03176 1.60207 1.69301 3.15754 3.39061 3.45047 3.47532 3.65648 4.07278 4.49865 4.66180 4.75016 4.91822 4.98940 5.06121 5.12730 5.24454 5.28363 5.29372 5.39012 5.43486 5.47819 5.54485 5.56329 5.64270 5.66228 5.79853 5.81171 5.87997 5.88829 5.93698 6.01598 6.03895 6.09485 6.11221 6.19314 6.27312 6.31414 6.37050 6.39183 6.43116 6.49655 6.62775 6.71873 6.75745 6.79368 6.86080 6.93788 7.03435 7.31215 7.53410 7.65251 7.92402 8.08840 8.43493 8.78663 9.24816 9.86372 10.50758 11.41981 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009187 B = 0.005337 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3047.084037 B = 5245.124189 C = 7557.603106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 C -0.130 4.130 4 C 0.144 3.856 5 N -0.599 5.599 6 C -0.226 4.226 7 H 0.075 0.925 8 C -0.005 4.005 9 N -0.911 5.911 10 Si 0.907 3.093 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.146 3.854 15 C 0.125 3.875 16 H 0.082 0.918 17 N -0.704 5.704 18 C 0.521 3.479 19 O -0.534 6.534 20 C -0.062 4.062 21 H 0.092 0.908 22 C -0.104 4.104 23 C -0.116 4.116 24 C -0.079 4.079 25 C -0.074 4.074 26 C -0.129 4.129 27 C -0.120 4.120 28 C -0.111 4.111 29 C -0.100 4.100 30 C -0.070 4.070 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.020 0.980 38 H 0.022 0.978 39 H 0.252 0.748 40 H 0.116 0.884 41 H 0.017 0.983 42 H 0.394 0.606 43 H 0.067 0.933 44 H 0.082 0.918 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.075 0.925 49 H 0.116 0.884 50 H 0.117 0.883 51 H 0.123 0.877 52 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.475 12.944 6.139 16.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.088 4.088 3 C -0.188 4.188 4 C 0.018 3.982 5 N -0.326 5.326 6 C -0.355 4.355 7 H 0.093 0.907 8 C -0.202 4.202 9 N -0.559 5.559 10 Si 0.738 3.262 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.209 1.209 14 C 0.021 3.979 15 C 0.019 3.981 16 H 0.100 0.900 17 N -0.355 5.355 18 C 0.307 3.693 19 O -0.410 6.410 20 C -0.083 4.083 21 H 0.110 0.890 22 C -0.142 4.142 23 C -0.154 4.154 24 C -0.116 4.116 25 C -0.074 4.074 26 C -0.148 4.148 27 C -0.138 4.138 28 C -0.129 4.129 29 C -0.118 4.118 30 C -0.070 4.070 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.038 0.962 38 H 0.040 0.960 39 H 0.063 0.937 40 H 0.134 0.866 41 H 0.035 0.965 42 H 0.229 0.771 43 H 0.086 0.914 44 H 0.100 0.900 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.093 0.907 49 H 0.134 0.866 50 H 0.136 0.864 51 H 0.141 0.859 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.044 12.248 6.736 15.653 hybrid contribution 0.515 -0.783 -1.161 1.492 sum 7.559 11.466 5.575 14.821 Atomic orbital electron populations 1.21680 0.93607 1.02463 1.00800 1.21834 0.95973 0.94526 0.96511 1.21718 1.00348 0.95495 1.01268 1.21392 0.96362 0.86913 0.93581 1.44445 1.74201 1.06574 1.07342 1.18983 1.34408 0.89264 0.92808 0.90735 1.24753 1.01715 0.97453 0.96236 1.69809 1.53266 1.22220 1.10620 0.86197 0.78761 0.82070 0.79207 1.21683 1.21734 1.20862 1.22304 1.00049 0.90581 0.84984 1.22489 0.81367 0.98249 0.95962 0.90006 1.45942 1.14860 1.60289 1.14428 1.20215 0.87267 0.79840 0.82022 1.90685 1.62195 1.38243 1.49873 1.20160 0.91744 0.97367 0.99047 0.88987 1.21443 0.96691 1.02229 0.93865 1.21537 0.95286 0.96973 1.01592 1.20458 1.00332 0.95856 0.94929 1.19456 0.95042 0.97051 0.95876 1.21010 0.99542 0.96682 0.97520 1.21066 0.98386 0.99506 0.94837 1.21125 0.94463 0.97314 0.99954 1.21441 0.98807 0.95176 0.96363 1.19103 0.95266 0.97570 0.95104 0.93129 0.92757 0.91774 0.92954 0.92757 0.92821 0.96207 0.95983 0.93722 0.86650 0.96497 0.77077 0.91380 0.89952 0.91653 0.91259 0.91033 0.90669 0.86575 0.86450 0.85856 0.85021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 8.41 37.16 0.31 -1.61 16 2 C -0.09 -1.42 0.81 -152.68 -0.12 -1.54 16 3 C -0.13 -1.67 8.07 37.16 0.30 -1.37 16 4 C 0.14 2.83 6.41 -3.06 -0.02 2.81 16 5 N -0.60 -14.65 3.39 -170.08 -0.58 -15.23 16 6 C -0.23 -6.12 10.27 -15.06 -0.15 -6.28 16 7 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 8 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 9 N -0.91 -26.70 10.09 55.49 0.56 -26.14 16 10 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 C 0.15 3.56 5.27 -2.53 -0.01 3.55 16 15 C 0.12 2.38 2.52 -65.78 -0.17 2.21 16 16 H 0.08 1.60 7.71 -51.93 -0.40 1.20 16 17 N -0.70 -12.13 3.91 -51.73 -0.20 -12.34 16 18 C 0.52 9.44 5.70 -10.98 -0.06 9.38 16 19 O -0.53 -11.86 15.92 5.55 0.09 -11.77 16 20 C -0.06 -0.90 2.57 -93.09 -0.24 -1.14 16 21 H 0.09 1.11 8.12 -51.93 -0.42 0.69 16 22 C -0.10 -1.32 5.07 -26.70 -0.14 -1.45 16 23 C -0.12 -1.17 5.98 -26.70 -0.16 -1.33 16 24 C -0.08 -0.87 5.67 -28.05 -0.16 -1.03 16 25 C -0.07 -1.06 5.74 -104.62 -0.60 -1.66 16 26 C -0.13 -1.79 9.61 -39.44 -0.38 -2.17 16 27 C -0.12 -1.80 10.05 -39.68 -0.40 -2.20 16 28 C -0.11 -1.94 10.05 -39.68 -0.40 -2.34 16 29 C -0.10 -1.82 9.04 -39.45 -0.36 -2.18 16 30 C -0.07 -1.12 5.42 -104.61 -0.57 -1.69 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 1.10 7.57 -51.93 -0.39 0.71 16 34 H 0.05 0.64 6.35 -51.93 -0.33 0.31 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.02 0.38 7.76 -51.93 -0.40 -0.02 16 38 H 0.02 0.45 7.85 -51.93 -0.41 0.04 16 39 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.12 3.29 5.87 -51.93 -0.31 2.98 16 41 H 0.02 0.45 7.80 -51.93 -0.41 0.05 16 42 H 0.39 6.07 6.78 -40.82 -0.28 5.79 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.08 1.22 7.51 -51.93 -0.39 0.83 16 45 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 48 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.12 1.28 8.05 -52.48 -0.42 0.86 16 50 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 51 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 52 H 0.13 2.66 6.58 -52.49 -0.35 2.31 16 LS Contribution 399.77 15.07 6.02 6.02 Total: -1.00 -31.77 399.77 -11.24 -43.01 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -8.69 Total: 9.71 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -3.42 Total: -10.28 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.22 Total: -53.71 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.77 -11.24 -43.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974753679.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.493 kcal (2) G-P(sol) polarization free energy of solvation -31.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds