Wall clock time and date at job start Wed Apr 1 2020 02:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 110.77902 * 2 1 4 4 C 1.54317 * 110.72206 * 236.76071 * 2 1 3 5 5 N 1.47029 * 107.26855 * 263.82530 * 4 2 1 6 6 C 1.36937 * 125.64379 * 181.02257 * 5 4 2 7 7 H 1.07997 * 120.00341 * 0.02562 * 6 5 4 8 8 C 1.38819 * 119.99922 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99480 * 359.97438 * 8 6 5 10 10 Si 1.86791 * 120.00318 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47799 * 89.99370 * 10 8 6 12 12 H 1.48498 * 109.47245 * 209.99883 * 10 8 6 13 13 H 1.48502 * 109.47142 * 329.99398 * 10 8 6 14 14 C 1.47415 * 108.70445 * 1.06009 * 5 4 2 15 15 C 1.54908 * 104.83306 * 335.87166 * 14 5 4 16 16 H 1.08999 * 111.00594 * 155.12410 * 15 14 5 17 17 N 1.46499 * 111.00155 * 278.93389 * 15 14 5 18 18 C 1.34781 * 120.00068 * 273.54718 * 17 15 14 19 19 O 1.21284 * 119.99919 * 5.13526 * 18 17 15 20 20 C 1.50698 * 119.99986 * 185.14327 * 18 17 15 21 21 H 1.09001 * 109.25374 * 23.64521 * 20 18 17 22 22 C 1.52729 * 109.22535 * 143.09879 * 20 18 17 23 23 C 1.53322 * 108.38598 * 171.35724 * 22 20 18 24 24 C 1.52743 * 108.38223 * 290.11367 * 23 22 20 25 25 C 1.50633 * 110.58530 * 51.09149 * 24 23 22 26 26 C 1.38908 * 117.75327 * 162.46288 * 25 24 23 27 27 C 1.37936 * 120.54718 * 179.59904 * 26 25 24 28 28 C 1.38267 * 119.77081 * 0.07549 * 27 26 25 29 29 C 1.37929 * 119.77029 * 0.09760 * 28 27 26 30 30 C 1.37666 * 122.56817 * 342.29183 * 25 24 23 31 31 H 1.09003 * 109.47060 * 296.76068 * 1 2 3 32 32 H 1.08998 * 109.47056 * 56.76398 * 1 2 3 33 33 H 1.09005 * 109.46622 * 176.76495 * 1 2 3 34 34 H 1.08995 * 109.46933 * 183.24078 * 3 2 1 35 35 H 1.09001 * 109.46536 * 303.23801 * 3 2 1 36 36 H 1.08999 * 109.47158 * 63.23491 * 3 2 1 37 37 H 1.09003 * 109.88113 * 144.41283 * 4 2 1 38 38 H 1.08991 * 110.01168 * 23.31657 * 4 2 1 39 39 H 0.97003 * 119.99785 * 179.97438 * 9 8 6 40 40 H 1.08998 * 110.36885 * 217.02921 * 14 5 4 41 41 H 1.09005 * 110.36627 * 94.70490 * 14 5 4 42 42 H 0.96997 * 120.00401 * 93.54706 * 17 15 14 43 43 H 1.08998 * 109.68143 * 291.07849 * 22 20 18 44 44 H 1.08998 * 109.68428 * 51.59599 * 22 20 18 45 45 H 1.09004 * 109.68466 * 49.83381 * 23 22 20 46 46 H 1.09001 * 109.68298 * 170.35424 * 23 22 20 47 47 H 1.08995 * 109.25335 * 171.37317 * 24 23 22 48 48 H 1.09000 * 109.25370 * 290.84183 * 24 23 22 49 49 H 1.08005 * 119.72760 * 359.65112 * 26 25 24 50 50 H 1.08001 * 120.11430 * 180.09803 * 27 26 25 51 51 H 1.08000 * 120.11380 * 180.37472 * 28 27 26 52 52 H 1.08001 * 119.72986 * 179.90786 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7911 -1.2072 5 7 2.3717 -2.1531 -0.7388 6 6 2.8934 -3.1636 -1.5016 7 1 3.1235 -2.9909 -2.5425 8 6 3.1264 -4.4102 -0.9369 9 7 2.8463 -4.6205 0.3319 10 14 3.8386 -5.7885 -1.9771 11 1 5.3211 -5.7519 -1.8996 12 1 3.3486 -7.0953 -1.4699 13 1 3.4123 -5.6142 -3.3889 14 6 2.0127 -2.2508 0.6876 15 6 2.0790 -0.7954 1.2138 16 1 1.4401 -0.6663 2.0875 17 7 3.4595 -0.4081 1.5145 18 6 3.9888 -0.6837 2.7230 19 8 3.3561 -1.3337 3.5282 20 6 5.3666 -0.1843 3.0738 21 1 5.6011 0.6849 2.4593 22 6 5.3959 0.2176 4.5469 23 6 6.8483 0.5145 4.9384 24 6 7.6230 -0.8018 4.9493 25 6 7.4128 -1.5506 3.6593 26 6 8.3125 -2.5609 3.3439 27 6 8.1697 -3.2890 2.1811 28 6 7.1236 -3.0107 1.3209 29 6 6.2312 -2.0055 1.6305 30 6 6.3732 -1.2714 2.8012 31 1 -0.3633 0.4627 0.9176 32 1 -0.3633 0.5632 -0.8595 33 1 -0.3633 -1.0261 -0.0580 34 1 3.1609 1.4062 -0.0581 35 1 1.6750 1.9700 -0.8596 36 1 1.7690 1.9344 0.9175 37 1 2.9869 -0.3206 -1.5774 38 1 1.3284 -0.8257 -1.9995 39 1 3.0088 -5.4916 0.7265 40 1 2.7294 -2.8786 1.2171 41 1 1.0040 -2.6487 0.7986 42 1 3.9926 0.0468 0.8439 43 1 4.7859 1.1084 4.6966 44 1 5.0100 -0.5984 5.1579 45 1 7.2923 1.1958 4.2125 46 1 6.8762 0.9658 5.9303 47 1 8.6853 -0.5926 5.0744 48 1 7.2772 -1.4155 5.7810 49 1 9.1302 -2.7787 4.0151 50 1 8.8723 -4.0741 1.9436 51 1 7.0030 -3.5813 0.4119 52 1 5.4152 -1.7877 0.9574 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974753679.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:21 Heat of formation + Delta-G solvation = -17.132269 kcal Electronic energy + Delta-G solvation = -32054.175863 eV Core-core repulsion = 28210.468135 eV Total energy + Delta-G solvation = -3843.707728 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.80634 -40.56262 -39.23485 -36.78880 -35.67323 -34.60778 -33.45668 -32.60274 -31.15677 -30.22266 -29.52698 -28.03993 -27.40911 -25.68912 -24.67827 -23.59868 -23.41463 -22.19108 -21.30846 -20.36459 -19.92575 -18.70436 -18.20582 -17.62680 -17.29300 -16.55072 -16.42062 -16.31970 -15.75174 -15.58544 -15.33430 -15.15189 -14.84793 -14.62562 -14.55518 -14.18030 -14.05702 -13.83700 -13.73759 -13.65804 -13.31424 -13.07732 -13.02314 -12.96752 -12.87687 -12.65135 -12.58170 -12.53989 -12.29874 -12.15053 -11.84502 -11.78407 -11.76120 -11.62073 -11.43050 -11.36193 -11.23539 -10.83803 -10.68085 -9.92272 -9.67308 -9.47539 -8.83851 -7.74675 -5.19691 0.38533 0.45615 1.40203 1.41456 1.50311 1.70573 2.28170 2.46562 2.83347 3.34402 3.55903 3.57633 3.68706 3.70925 3.91112 3.96528 3.99391 4.06925 4.07794 4.20057 4.22704 4.36161 4.41297 4.44350 4.52604 4.53481 4.62155 4.74739 4.77172 4.83330 4.87525 4.91785 4.98202 5.03014 5.03582 5.04993 5.10235 5.11192 5.18851 5.20121 5.29040 5.32317 5.33556 5.47100 5.48597 5.53366 5.56421 5.66122 5.67743 5.72483 5.86126 6.11026 6.32940 6.64361 7.09402 7.35283 7.79995 8.43630 9.24488 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009187 B = 0.005337 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3047.084037 B = 5245.124189 C = 7557.603106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.073 4.073 3 C -0.124 4.124 4 C 0.138 3.862 5 N -0.615 5.615 6 C -0.232 4.232 7 H 0.081 0.919 8 C -0.061 4.061 9 N -0.941 5.941 10 Si 0.967 3.033 11 H -0.286 1.286 12 H -0.300 1.300 13 H -0.268 1.268 14 C 0.156 3.844 15 C 0.136 3.864 16 H 0.076 0.924 17 N -0.694 5.694 18 C 0.517 3.483 19 O -0.582 6.582 20 C -0.055 4.055 21 H 0.122 0.878 22 C -0.103 4.103 23 C -0.109 4.109 24 C -0.080 4.080 25 C -0.074 4.074 26 C -0.125 4.125 27 C -0.122 4.122 28 C -0.140 4.140 29 C -0.126 4.126 30 C -0.082 4.082 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.030 0.970 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.033 0.967 38 H 0.024 0.976 39 H 0.240 0.760 40 H 0.070 0.930 41 H -0.021 1.021 42 H 0.405 0.595 43 H 0.084 0.916 44 H 0.053 0.947 45 H 0.080 0.920 46 H 0.096 0.904 47 H 0.102 0.898 48 H 0.077 0.923 49 H 0.154 0.846 50 H 0.141 0.859 51 H 0.103 0.897 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.601 16.220 6.752 20.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.074 4.074 3 C -0.181 4.181 4 C 0.013 3.987 5 N -0.340 5.340 6 C -0.361 4.361 7 H 0.099 0.901 8 C -0.254 4.254 9 N -0.591 5.591 10 Si 0.796 3.204 11 H -0.213 1.213 12 H -0.227 1.227 13 H -0.193 1.193 14 C 0.030 3.970 15 C 0.030 3.970 16 H 0.094 0.906 17 N -0.345 5.345 18 C 0.305 3.695 19 O -0.462 6.462 20 C -0.076 4.076 21 H 0.140 0.860 22 C -0.141 4.141 23 C -0.146 4.146 24 C -0.116 4.116 25 C -0.074 4.074 26 C -0.143 4.143 27 C -0.139 4.139 28 C -0.158 4.158 29 C -0.144 4.144 30 C -0.083 4.083 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.051 0.949 38 H 0.042 0.958 39 H 0.049 0.951 40 H 0.088 0.912 41 H -0.004 1.004 42 H 0.242 0.758 43 H 0.103 0.897 44 H 0.072 0.928 45 H 0.098 0.902 46 H 0.114 0.886 47 H 0.120 0.880 48 H 0.096 0.904 49 H 0.172 0.828 50 H 0.159 0.841 51 H 0.121 0.879 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.182 15.582 7.298 19.503 hybrid contribution -0.169 -1.844 -1.378 2.308 sum 9.013 13.738 5.921 17.465 Atomic orbital electron populations 1.21683 0.92496 1.01093 1.03045 1.21822 0.96816 0.96077 0.92700 1.21691 1.00722 0.92485 1.03223 1.21636 0.96978 0.84925 0.95119 1.44638 1.73881 1.08134 1.07389 1.19358 1.33359 0.90062 0.93299 0.90110 1.25513 1.02828 0.99853 0.97209 1.70130 1.54948 1.21701 1.12307 0.85235 0.78000 0.78780 0.78341 1.21299 1.22703 1.19293 1.21912 0.96373 0.93495 0.85232 1.22156 0.82682 0.95394 0.96777 0.90588 1.45859 1.14251 1.59720 1.14674 1.20993 0.88376 0.78715 0.81431 1.90658 1.63807 1.40392 1.51349 1.20239 0.88491 0.97703 1.01168 0.85993 1.21471 0.99201 1.01786 0.91616 1.21550 0.92732 0.96801 1.03501 1.20592 1.02457 0.95949 0.92631 1.19957 0.93892 0.96990 0.96600 1.21471 1.00104 0.95553 0.97157 1.21334 0.97695 1.00121 0.94791 1.21130 0.96260 0.97956 1.00485 1.21315 0.98663 0.96944 0.97519 1.19288 0.96392 0.97942 0.94632 0.91149 0.90164 0.95036 0.92316 0.90438 0.91182 0.94944 0.95835 0.95064 0.91183 1.00364 0.75795 0.89727 0.92811 0.90177 0.88565 0.87967 0.90435 0.82814 0.84150 0.87917 0.88182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.63 8.41 71.98 0.61 -3.03 16 2 C -0.07 -2.31 0.81 -50.99 -0.04 -2.35 16 3 C -0.12 -2.75 8.07 71.98 0.58 -2.16 16 4 C 0.14 5.43 6.41 86.73 0.56 5.98 16 5 N -0.61 -31.43 3.39 -692.01 -2.35 -33.78 16 6 C -0.23 -13.05 10.27 84.04 0.86 -12.19 16 7 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 8 C -0.06 -3.56 5.49 84.86 0.47 -3.10 16 9 N -0.94 -59.27 10.09 21.65 0.22 -59.05 16 10 Si 0.97 47.30 29.55 68.60 2.03 49.32 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.30 -15.01 7.11 99.48 0.71 -14.31 16 13 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 14 C 0.16 8.18 5.27 86.86 0.46 8.63 16 15 C 0.14 5.37 2.52 46.38 0.12 5.49 16 16 H 0.08 3.10 7.71 -2.39 -0.02 3.08 16 17 N -0.69 -24.43 3.91 -435.96 -1.71 -26.14 16 18 C 0.52 19.30 5.70 87.66 0.50 19.80 16 19 O -0.58 -27.31 15.92 -3.04 -0.05 -27.36 16 20 C -0.06 -1.55 2.57 -12.40 -0.03 -1.58 16 21 H 0.12 2.65 8.12 -2.39 -0.02 2.64 16 22 C -0.10 -2.39 5.07 30.61 0.16 -2.24 16 23 C -0.11 -1.73 5.98 30.62 0.18 -1.55 16 24 C -0.08 -1.44 5.67 29.74 0.17 -1.28 16 25 C -0.07 -1.97 5.74 -19.86 -0.11 -2.09 16 26 C -0.13 -3.17 9.61 22.36 0.21 -2.95 16 27 C -0.12 -3.59 10.05 22.20 0.22 -3.36 16 28 C -0.14 -5.22 10.05 22.20 0.22 -4.99 16 29 C -0.13 -4.87 9.04 22.36 0.20 -4.67 16 30 C -0.08 -2.63 5.42 -19.86 -0.11 -2.74 16 31 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.03 1.10 7.57 -2.38 -0.02 1.08 16 34 H 0.06 1.24 6.35 -2.39 -0.02 1.23 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.03 1.21 7.76 -2.39 -0.02 1.19 16 38 H 0.02 0.93 7.85 -2.39 -0.02 0.91 16 39 H 0.24 15.03 8.31 -92.71 -0.77 14.26 16 40 H 0.07 4.36 5.87 -2.39 -0.01 4.34 16 41 H -0.02 -1.25 7.80 -2.38 -0.02 -1.27 16 42 H 0.40 12.39 6.78 -92.71 -0.63 11.76 16 43 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.05 1.57 7.51 -2.39 -0.02 1.55 16 45 H 0.08 1.10 8.10 -2.39 -0.02 1.08 16 46 H 0.10 1.09 8.14 -2.39 -0.02 1.08 16 47 H 0.10 1.30 8.12 -2.39 -0.02 1.28 16 48 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.15 2.72 8.05 -2.91 -0.02 2.70 16 50 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 51 H 0.10 4.07 8.06 -2.91 -0.02 4.05 16 52 H 0.10 4.40 6.58 -2.91 -0.02 4.38 16 Total: -1.00 -77.46 399.77 3.64 -73.82 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: 0.28 Total: 33.57 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 5.22 Total: -10.38 kcal Atomic # 7 Polarization: -115.13 SS G_CDS: -3.84 Total: -118.96 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.05 Total: -27.36 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.32 kcal Total: -77.46 3.64 -73.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974753679.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.683 kcal (2) G-P(sol) polarization free energy of solvation -77.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds