Wall clock time and date at job start Wed Apr 1 2020 02:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 110.78014 * 2 1 4 4 C 1.54327 * 110.71850 * 236.76622 * 2 1 3 5 5 N 1.47014 * 107.27265 * 263.82828 * 4 2 1 6 6 C 1.36937 * 125.65035 * 181.09449 * 5 4 2 7 7 H 1.08001 * 120.00252 * 359.97438 * 6 5 4 8 8 C 1.38817 * 120.00026 * 179.97438 * 6 5 4 9 9 N 1.31613 * 120.00059 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99842 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47086 * 89.99891 * 10 8 6 12 12 H 1.48504 * 109.46572 * 209.99794 * 10 8 6 13 13 H 1.48498 * 109.47094 * 329.99567 * 10 8 6 14 14 C 1.47425 * 108.70257 * 1.05837 * 5 4 2 15 15 C 1.54906 * 104.83152 * 335.87089 * 14 5 4 16 16 H 1.09002 * 111.00488 * 155.11982 * 15 14 5 17 17 N 1.46494 * 111.00606 * 278.93558 * 15 14 5 18 18 C 1.34785 * 119.99857 * 271.26626 * 17 15 14 19 19 O 1.21282 * 119.99757 * 354.95633 * 18 17 15 20 20 C 1.50702 * 119.99810 * 174.96235 * 18 17 15 21 21 H 1.09000 * 109.24920 * 337.47424 * 20 18 17 22 22 C 1.52729 * 109.24785 * 218.01133 * 20 18 17 23 23 C 1.53313 * 108.39569 * 188.58025 * 22 20 18 24 24 C 1.52737 * 108.34773 * 69.91642 * 23 22 20 25 25 C 1.50635 * 110.58794 * 308.87240 * 24 23 22 26 26 C 1.38909 * 117.74920 * 197.45256 * 25 24 23 27 27 C 1.37932 * 120.53934 * 180.61421 * 26 25 24 28 28 C 1.38265 * 119.77234 * 359.94967 * 27 26 25 29 29 C 1.37929 * 119.77141 * 359.88391 * 28 27 26 30 30 C 1.37664 * 122.56078 * 17.80336 * 25 24 23 31 31 H 1.09000 * 109.46762 * 296.75325 * 1 2 3 32 32 H 1.09001 * 109.47260 * 56.75536 * 1 2 3 33 33 H 1.08998 * 109.47232 * 176.75768 * 1 2 3 34 34 H 1.08998 * 109.47189 * 182.79812 * 3 2 1 35 35 H 1.09001 * 109.47336 * 302.80152 * 3 2 1 36 36 H 1.09001 * 109.46682 * 62.79920 * 3 2 1 37 37 H 1.08998 * 109.88211 * 144.40806 * 4 2 1 38 38 H 1.09002 * 109.88304 * 23.24498 * 4 2 1 39 39 H 0.96998 * 120.00574 * 180.02562 * 9 8 6 40 40 H 1.08997 * 110.37085 * 217.03265 * 14 5 4 41 41 H 1.09000 * 110.45998 * 94.75716 * 14 5 4 42 42 H 0.96996 * 120.00386 * 91.54358 * 17 15 14 43 43 H 1.09006 * 109.68614 * 308.33733 * 22 20 18 44 44 H 1.08997 * 109.68617 * 68.88903 * 22 20 18 45 45 H 1.08991 * 109.71439 * 310.19642 * 23 22 20 46 46 H 1.09001 * 109.68925 * 189.61765 * 23 22 20 47 47 H 1.09008 * 109.24948 * 188.58886 * 24 23 22 48 48 H 1.08996 * 109.22683 * 69.14486 * 24 23 22 49 49 H 1.07993 * 119.72938 * 0.58675 * 26 25 24 50 50 H 1.08002 * 120.10942 * 179.97438 * 27 26 25 51 51 H 1.08002 * 120.11018 * 179.85425 * 28 27 26 52 52 H 1.07998 * 119.72345 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4305 0.0000 4 6 2.0760 -0.7911 -1.2074 5 7 2.3716 -2.1530 -0.7393 6 6 2.8945 -3.1631 -1.5018 7 1 3.1250 -2.9902 -2.5427 8 6 3.1282 -4.4095 -0.9370 9 7 2.8478 -4.6201 0.3316 10 14 3.8421 -5.7872 -1.9770 11 1 5.3245 -5.7493 -1.8987 12 1 3.3529 -7.0945 -1.4701 13 1 3.4164 -5.6131 -3.3890 14 6 2.0127 -2.2509 0.6872 15 6 2.0791 -0.7955 1.2136 16 1 1.4403 -0.6665 2.0873 17 7 3.4596 -0.4083 1.5142 18 6 3.9741 -0.6428 2.7377 19 8 3.2682 -1.0899 3.6168 20 6 5.4263 -0.3493 3.0134 21 1 5.9774 -0.3480 2.0730 22 6 5.9940 -1.4326 3.9282 23 6 7.3988 -1.0057 4.3696 24 6 7.2638 0.1803 5.3224 25 6 6.3943 1.2506 4.7161 26 6 6.4621 2.5258 5.2629 27 6 5.6817 3.5461 4.7606 28 6 4.8253 3.2989 3.7036 29 6 4.7591 2.0342 3.1571 30 6 5.5450 1.0055 3.6607 31 1 -0.3633 0.4626 0.9177 32 1 -0.3634 0.5634 -0.8595 33 1 -0.3633 -1.0260 -0.0581 34 1 3.1614 1.4061 -0.0502 35 1 1.6813 1.9678 -0.8638 36 1 1.7625 1.9368 0.9140 37 1 2.9868 -0.3205 -1.5777 38 1 1.3262 -0.8254 -1.9978 39 1 3.0114 -5.4909 0.7264 40 1 2.7294 -2.8788 1.2166 41 1 1.0045 -2.6495 0.8000 42 1 4.0021 0.0205 0.8341 43 1 5.3533 -1.5478 4.8025 44 1 6.0511 -2.3772 3.3873 45 1 7.9845 -0.7119 3.4986 46 1 7.8904 -1.8333 4.8810 47 1 8.2522 0.5925 5.5256 48 1 6.8171 -0.1591 6.2569 49 1 7.1310 2.7197 6.0882 50 1 5.7397 4.5349 5.1912 51 1 4.2101 4.0933 3.3075 52 1 4.0903 1.8421 2.3312 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974753795.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:26 Heat of formation + Delta-G solvation = -1.007759 kcal Electronic energy + Delta-G solvation = -31581.043860 eV Core-core repulsion = 27738.035342 eV Total energy + Delta-G solvation = -3843.008517 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.63194 -39.24548 -37.80539 -35.83921 -33.82391 -33.14627 -32.42755 -30.69588 -30.25400 -29.10092 -28.06807 -26.79869 -25.61073 -24.43471 -23.26767 -22.68881 -22.32965 -20.59520 -19.76602 -19.30021 -18.57998 -16.97896 -16.72433 -16.37491 -15.92411 -15.47903 -15.36044 -14.67674 -14.32005 -14.21738 -13.97942 -13.77645 -13.60232 -13.49734 -13.21700 -13.14183 -12.89130 -12.69488 -12.41661 -12.15012 -12.09823 -11.90097 -11.73993 -11.63373 -11.43132 -11.28851 -11.16412 -11.01673 -10.91366 -10.76974 -10.66061 -10.40299 -10.30931 -10.20460 -9.93375 -9.79039 -9.68456 -9.38487 -8.78240 -8.67754 -8.53390 -8.30554 -6.80421 -5.62425 -3.05517 1.30780 1.33607 3.11411 3.39472 3.44744 3.47059 3.57098 3.82688 4.48994 4.56590 4.64399 4.89649 4.93500 4.94249 4.99469 5.06955 5.09752 5.24673 5.28762 5.33599 5.37699 5.44588 5.52470 5.53370 5.59946 5.63768 5.80794 5.82517 5.85734 5.87906 5.93483 5.99352 6.01902 6.04478 6.11532 6.19316 6.21485 6.26654 6.42879 6.43404 6.44985 6.48778 6.49769 6.60724 6.62677 6.70955 6.78459 6.96462 7.02046 7.51138 7.63160 7.88604 8.06869 8.39622 8.75974 9.22753 9.84302 10.48636 11.40027 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011728 B = 0.003918 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.790658 B = 7145.314823 C = 8846.741467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 C -0.131 4.131 4 C 0.144 3.856 5 N -0.600 5.600 6 C -0.225 4.225 7 H 0.076 0.924 8 C -0.008 4.008 9 N -0.917 5.917 10 Si 0.911 3.089 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.282 1.282 14 C 0.147 3.853 15 C 0.123 3.877 16 H 0.086 0.914 17 N -0.703 5.703 18 C 0.526 3.474 19 O -0.539 6.539 20 C -0.066 4.066 21 H 0.098 0.902 22 C -0.106 4.106 23 C -0.118 4.118 24 C -0.081 4.081 25 C -0.068 4.068 26 C -0.123 4.123 27 C -0.123 4.123 28 C -0.122 4.122 29 C -0.117 4.117 30 C -0.058 4.058 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.021 0.979 38 H 0.023 0.977 39 H 0.252 0.748 40 H 0.112 0.888 41 H 0.019 0.981 42 H 0.395 0.605 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.119 0.881 50 H 0.119 0.881 51 H 0.120 0.880 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.564 15.905 7.480 18.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.088 4.088 3 C -0.189 4.189 4 C 0.018 3.982 5 N -0.326 5.326 6 C -0.353 4.353 7 H 0.094 0.906 8 C -0.204 4.204 9 N -0.565 5.565 10 Si 0.742 3.258 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.208 1.208 14 C 0.021 3.979 15 C 0.018 3.982 16 H 0.104 0.896 17 N -0.353 5.353 18 C 0.311 3.689 19 O -0.415 6.415 20 C -0.087 4.087 21 H 0.115 0.885 22 C -0.144 4.144 23 C -0.155 4.155 24 C -0.118 4.118 25 C -0.068 4.068 26 C -0.141 4.141 27 C -0.141 4.141 28 C -0.140 4.140 29 C -0.135 4.135 30 C -0.058 4.058 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.039 0.961 38 H 0.041 0.959 39 H 0.063 0.937 40 H 0.130 0.870 41 H 0.037 0.963 42 H 0.230 0.770 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.091 0.909 48 H 0.096 0.904 49 H 0.137 0.863 50 H 0.137 0.863 51 H 0.138 0.862 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.094 15.318 8.108 18.372 hybrid contribution 0.481 -0.490 -1.068 1.269 sum 6.575 14.829 7.040 17.683 Atomic orbital electron populations 1.21683 0.93584 1.02470 1.00829 1.21835 0.95994 0.94507 0.96506 1.21733 1.00318 0.95545 1.01295 1.21399 0.96385 0.86826 0.93629 1.44448 1.74159 1.06652 1.07374 1.19027 1.34127 0.89285 0.92872 0.90623 1.24775 1.01728 0.97573 0.96330 1.69804 1.53595 1.22293 1.10799 0.86129 0.78716 0.81824 0.79144 1.21685 1.21691 1.20819 1.22293 1.00017 0.90513 0.85059 1.22515 0.81507 0.98082 0.96125 0.89648 1.45911 1.14895 1.61446 1.13016 1.20135 0.88803 0.77582 0.82380 1.90665 1.61007 1.44877 1.45000 1.20205 0.94556 0.93500 1.00443 0.88451 1.21453 0.95913 0.97065 0.99951 1.21553 0.97107 0.97505 0.99376 1.20508 0.98387 0.94069 0.98852 1.19586 0.97188 0.94821 0.95244 1.21102 1.00196 0.92602 1.00218 1.21041 0.96921 0.98939 0.97153 1.21019 0.99162 0.96750 0.97032 1.21305 0.98932 0.92943 1.00340 1.19219 0.96690 0.93818 0.96115 0.93099 0.92749 0.91766 0.92981 0.92690 0.92828 0.96133 0.95921 0.93720 0.87017 0.96291 0.77045 0.90048 0.90566 0.91533 0.90988 0.90861 0.90445 0.86256 0.86264 0.86150 0.85931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 8.41 37.16 0.31 -1.63 16 2 C -0.09 -1.43 0.80 -152.67 -0.12 -1.56 16 3 C -0.13 -1.70 8.08 37.16 0.30 -1.40 16 4 C 0.14 2.85 6.41 -3.07 -0.02 2.83 16 5 N -0.60 -14.82 3.39 -170.08 -0.58 -15.40 16 6 C -0.22 -6.14 10.27 -15.06 -0.15 -6.30 16 7 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 8 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 9 N -0.92 -26.86 10.09 55.49 0.56 -26.30 16 10 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.15 3.58 5.27 -2.53 -0.01 3.56 16 15 C 0.12 2.36 2.64 -65.79 -0.17 2.19 16 16 H 0.09 1.71 7.49 -51.93 -0.39 1.32 16 17 N -0.70 -12.21 3.91 -51.73 -0.20 -12.41 16 18 C 0.53 9.54 5.65 -10.98 -0.06 9.48 16 19 O -0.54 -11.80 15.83 5.56 0.09 -11.71 16 20 C -0.07 -0.97 2.57 -93.10 -0.24 -1.21 16 21 H 0.10 1.32 8.10 -51.93 -0.42 0.90 16 22 C -0.11 -1.51 5.08 -26.71 -0.14 -1.64 16 23 C -0.12 -1.28 5.98 -26.70 -0.16 -1.44 16 24 C -0.08 -0.83 5.67 -28.05 -0.16 -0.99 16 25 C -0.07 -0.83 5.74 -104.61 -0.60 -1.43 16 26 C -0.12 -1.31 9.61 -39.44 -0.38 -1.69 16 27 C -0.12 -1.27 10.05 -39.68 -0.40 -1.67 16 28 C -0.12 -1.37 10.05 -39.68 -0.40 -1.77 16 29 C -0.12 -1.52 9.04 -39.45 -0.36 -1.88 16 30 C -0.06 -0.79 5.42 -104.62 -0.57 -1.35 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 1.11 7.58 -51.93 -0.39 0.71 16 34 H 0.05 0.64 6.38 -51.93 -0.33 0.31 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.02 0.40 7.77 -51.93 -0.40 0.00 16 38 H 0.02 0.46 7.84 -51.93 -0.41 0.05 16 39 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.11 3.17 5.87 -51.93 -0.30 2.86 16 41 H 0.02 0.51 7.81 -51.93 -0.41 0.10 16 42 H 0.39 6.17 6.91 -40.82 -0.28 5.89 16 43 H 0.08 1.28 7.52 -51.93 -0.39 0.89 16 44 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.07 0.60 8.13 -51.92 -0.42 0.18 16 48 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.12 0.99 8.05 -52.49 -0.42 0.57 16 50 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 51 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 52 H 0.12 1.57 6.67 -52.49 -0.35 1.22 16 LS Contribution 399.81 15.07 6.03 6.03 Total: -1.00 -31.99 399.81 -11.25 -43.24 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -8.69 Total: 7.77 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -3.42 Total: -8.21 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.22 Total: -54.12 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.99 -11.25 -43.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974753795.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.230 kcal (2) G-P(sol) polarization free energy of solvation -31.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds