Wall clock time and date at job start Wed Apr 1 2020 02:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 110.91259 * 2 1 4 4 C 1.54902 * 111.00045 * 123.90278 * 2 1 3 5 5 N 1.47428 * 104.83469 * 81.06534 * 4 2 1 6 6 C 1.36936 * 125.64785 * 204.08942 * 5 4 2 7 7 H 1.08003 * 120.00271 * 0.02562 * 6 5 4 8 8 C 1.38817 * 119.99862 * 180.02562 * 6 5 4 9 9 N 1.31618 * 119.99574 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99979 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47247 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.46954 * 119.99710 * 10 8 6 13 13 H 1.48500 * 109.46840 * 239.99659 * 10 8 6 14 14 C 1.47020 * 108.70027 * 24.12669 * 5 4 2 15 15 C 1.54323 * 107.40415 * 358.86117 * 14 5 4 16 16 H 1.09000 * 110.72269 * 219.52068 * 15 14 5 17 17 N 1.46508 * 110.71851 * 96.24720 * 15 14 5 18 18 C 1.34773 * 119.99802 * 88.68926 * 17 15 14 19 19 O 1.21288 * 119.99966 * 5.30811 * 18 17 15 20 20 C 1.50698 * 120.00168 * 185.30526 * 18 17 15 21 21 H 1.08999 * 109.25300 * 22.80751 * 20 18 17 22 22 C 1.52727 * 109.25599 * 142.27838 * 20 18 17 23 23 C 1.53313 * 108.40035 * 171.41820 * 22 20 18 24 24 C 1.52727 * 108.34809 * 290.08149 * 23 22 20 25 25 C 1.50632 * 110.59018 * 51.12452 * 24 23 22 26 26 C 1.38908 * 117.75507 * 162.54611 * 25 24 23 27 27 C 1.37924 * 120.54918 * 179.38463 * 26 25 24 28 28 C 1.38270 * 119.76971 * 0.05554 * 27 26 25 29 29 C 1.37935 * 119.76875 * 0.11431 * 28 27 26 30 30 C 1.37663 * 122.56200 * 342.20365 * 25 24 23 31 31 H 1.08996 * 109.47204 * 297.55564 * 1 2 3 32 32 H 1.09002 * 109.47029 * 57.55139 * 1 2 3 33 33 H 1.08995 * 109.46914 * 177.54680 * 1 2 3 34 34 H 1.09006 * 109.46559 * 178.22994 * 3 2 1 35 35 H 1.08993 * 109.47623 * 298.22674 * 3 2 1 36 36 H 1.09001 * 109.47476 * 58.23263 * 3 2 1 37 37 H 1.09001 * 110.37135 * 322.22168 * 4 2 1 38 38 H 1.09004 * 110.36773 * 199.90110 * 4 2 1 39 39 H 0.97004 * 119.99462 * 179.97438 * 9 8 6 40 40 H 1.08998 * 109.88085 * 118.35903 * 14 5 4 41 41 H 1.08995 * 109.87996 * 239.36617 * 14 5 4 42 42 H 0.96999 * 120.00532 * 268.69272 * 17 15 14 43 43 H 1.09007 * 109.67976 * 291.11000 * 22 20 18 44 44 H 1.08999 * 109.68490 * 51.65641 * 22 20 18 45 45 H 1.09007 * 109.68716 * 170.37507 * 23 22 20 46 46 H 1.08994 * 109.74196 * 49.81911 * 23 22 20 47 47 H 1.09001 * 109.25932 * 290.83422 * 24 23 22 48 48 H 1.09006 * 109.22392 * 171.38562 * 24 23 22 49 49 H 1.08005 * 119.72468 * 359.41314 * 26 25 24 50 50 H 1.08002 * 120.11854 * 180.02562 * 27 26 25 51 51 H 1.07994 * 120.11872 * 180.09059 * 28 27 26 52 52 H 1.08002 * 119.72153 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0852 -0.8066 1.2003 5 7 2.0139 -2.2159 0.7733 6 6 1.9460 -3.3000 1.6072 7 1 1.9413 -3.1583 2.6779 8 6 1.8832 -4.5811 1.0763 9 7 1.8885 -4.7537 -0.2285 10 14 1.7899 -6.0599 2.2138 11 1 1.7985 -5.5997 3.6257 12 1 0.5382 -6.8124 1.9456 13 1 2.9595 -6.9431 1.9743 14 6 2.0285 -2.2646 -0.6960 15 6 2.0841 -0.8090 -1.2056 16 1 1.4491 -0.6828 -2.0824 17 7 3.4640 -0.4161 -1.5023 18 6 3.9793 -0.6385 -2.7276 19 8 3.2734 -1.0746 -3.6123 20 6 5.4324 -0.3451 -2.9986 21 1 5.9835 -0.3599 -2.0583 22 6 5.9971 -1.4155 -3.9303 23 6 7.4031 -0.9860 -4.3649 24 6 7.2716 0.2151 -5.2991 25 6 6.4052 1.2783 -4.6763 26 6 6.4768 2.5617 -5.2030 27 6 5.6994 3.5764 -4.6851 28 6 4.8422 3.3153 -3.6320 29 6 4.7722 2.0424 -3.1053 30 6 5.5552 1.0194 -3.6248 31 1 -0.3633 0.4754 0.9111 32 1 -0.3633 0.5514 -0.8672 33 1 -0.3633 -1.0267 -0.0440 34 1 3.1655 1.4018 0.0317 35 1 1.7519 1.9421 -0.9054 36 1 1.7005 1.9618 0.8737 37 1 1.4672 -0.6461 2.0837 38 1 3.1182 -0.5234 1.4025 39 1 1.8450 -5.6490 -0.5994 40 1 2.9063 -2.8116 -1.0400 41 1 1.1232 -2.7504 -1.0598 42 1 4.0068 0.0041 -0.8169 43 1 6.0512 -2.3687 -3.4041 44 1 5.3560 -1.5152 -4.8062 45 1 7.8923 -1.8070 -4.8891 46 1 7.9901 -0.7077 -3.4897 47 1 6.8244 -0.1079 -6.2392 48 1 8.2615 0.6274 -5.4951 49 1 7.1465 2.7665 -6.0252 50 1 5.7603 4.5716 -5.1002 51 1 4.2298 4.1053 -3.2231 52 1 4.1027 1.8394 -2.2825 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974753806.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:30 Heat of formation + Delta-G solvation = -1.502563 kcal Electronic energy + Delta-G solvation = -31369.988427 eV Core-core repulsion = 27526.958454 eV Total energy + Delta-G solvation = -3843.029973 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.70697 -39.28598 -37.84276 -35.90470 -33.87444 -33.14882 -32.48037 -30.68805 -30.31148 -29.16084 -28.02683 -26.79567 -25.62927 -24.50511 -23.31173 -22.75100 -22.36475 -20.58021 -19.86088 -19.36838 -18.63071 -17.04365 -16.72398 -16.43758 -15.89981 -15.53660 -15.39034 -14.74564 -14.34758 -14.24560 -14.02488 -13.90006 -13.63116 -13.54272 -13.27658 -13.21049 -12.94130 -12.53397 -12.45976 -12.17924 -12.01602 -11.98032 -11.71513 -11.66337 -11.50194 -11.34951 -11.09536 -11.02030 -10.95028 -10.79019 -10.73176 -10.39363 -10.36301 -10.21535 -9.98769 -9.85780 -9.63893 -9.46963 -8.82765 -8.64435 -8.57561 -8.40206 -6.81442 -5.68213 -3.02899 1.25775 1.29174 3.01218 3.40466 3.45709 3.48579 3.49207 3.75559 4.49771 4.51109 4.57643 4.83286 4.86448 4.88255 4.95322 5.01690 5.03973 5.25326 5.28677 5.30539 5.32045 5.36009 5.46094 5.54082 5.54350 5.64586 5.76301 5.79138 5.81623 5.87752 5.91361 5.93747 5.96518 6.03352 6.12905 6.16765 6.21143 6.25091 6.34862 6.40291 6.41067 6.44158 6.55211 6.59509 6.61823 6.68214 6.76962 6.91786 6.97200 7.57144 7.65801 7.83642 7.96800 8.26862 8.65418 9.23196 9.83933 10.49444 11.42324 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014050 B = 0.003411 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.394340 B = 8206.232386 C = 9656.439816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.089 4.089 3 C -0.131 4.131 4 C 0.144 3.856 5 N -0.602 5.602 6 C -0.229 4.229 7 H 0.077 0.923 8 C -0.007 4.007 9 N -0.918 5.918 10 Si 0.910 3.090 11 H -0.281 1.281 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.175 3.825 15 C 0.123 3.877 16 H 0.088 0.912 17 N -0.711 5.711 18 C 0.523 3.477 19 O -0.535 6.535 20 C -0.066 4.066 21 H 0.097 0.903 22 C -0.107 4.107 23 C -0.118 4.118 24 C -0.082 4.082 25 C -0.068 4.068 26 C -0.123 4.123 27 C -0.122 4.122 28 C -0.121 4.121 29 C -0.117 4.117 30 C -0.060 4.060 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.040 0.960 38 H 0.015 0.985 39 H 0.252 0.748 40 H 0.047 0.953 41 H 0.053 0.947 42 H 0.394 0.606 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.066 0.934 47 H 0.078 0.922 48 H 0.073 0.927 49 H 0.120 0.880 50 H 0.120 0.880 51 H 0.121 0.879 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.525 16.629 -7.559 20.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C -0.189 4.189 4 C 0.018 3.982 5 N -0.329 5.329 6 C -0.357 4.357 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.565 5.565 10 Si 0.741 3.259 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.050 3.950 15 C 0.018 3.982 16 H 0.106 0.894 17 N -0.362 5.362 18 C 0.308 3.692 19 O -0.411 6.411 20 C -0.087 4.087 21 H 0.115 0.885 22 C -0.144 4.144 23 C -0.155 4.155 24 C -0.118 4.118 25 C -0.068 4.068 26 C -0.141 4.141 27 C -0.140 4.140 28 C -0.139 4.139 29 C -0.135 4.135 30 C -0.060 4.060 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.032 0.968 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.229 0.771 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.096 0.904 48 H 0.092 0.908 49 H 0.138 0.862 50 H 0.138 0.862 51 H 0.139 0.861 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 8.984 16.039 -8.202 20.130 hybrid contribution 0.172 -0.610 1.008 1.191 sum 9.157 15.429 -7.193 19.329 Atomic orbital electron populations 1.21590 0.93341 1.02825 1.00522 1.22050 0.96339 0.94063 0.96627 1.21690 1.00140 0.95702 1.01375 1.21623 0.96505 0.85801 0.94282 1.44436 1.86896 0.99699 1.01825 1.19066 1.43755 0.83985 0.88911 0.90466 1.24806 1.02261 0.97357 0.95944 1.69979 1.56742 1.20650 1.09122 0.86077 0.77242 0.83046 0.79573 1.20584 1.21794 1.21845 1.21511 1.01566 0.88582 0.83345 1.22522 0.81278 0.97446 0.96945 0.89378 1.46135 1.15101 1.62141 1.12795 1.20197 0.88911 0.77582 0.82462 1.90684 1.61041 1.44844 1.44556 1.20217 0.94403 0.93573 1.00533 0.88468 1.21462 0.96052 0.97037 0.99893 1.21550 0.96996 0.97449 0.99529 1.20508 0.98465 0.94036 0.98840 1.19580 0.97173 0.94777 0.95275 1.21106 1.00211 0.92555 1.00240 1.21052 0.96846 0.99001 0.97057 1.21030 0.99116 0.96672 0.97107 1.21312 0.98904 0.92950 1.00344 1.19199 0.96856 0.93716 0.96266 0.92864 0.93418 0.91288 0.93129 0.92851 0.92599 0.94146 0.96761 0.93786 0.93488 0.92908 0.77076 0.90689 0.89961 0.90952 0.91521 0.90406 0.90815 0.86223 0.86217 0.86097 0.85893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.60 37.16 0.32 -1.68 16 2 C -0.09 -1.46 0.83 -152.23 -0.13 -1.59 16 3 C -0.13 -1.66 8.26 37.16 0.31 -1.36 16 4 C 0.14 2.82 6.15 -2.53 -0.02 2.81 16 5 N -0.60 -14.89 3.38 -170.08 -0.58 -15.47 16 6 C -0.23 -6.29 10.28 -15.06 -0.15 -6.44 16 7 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 8 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 9 N -0.92 -27.24 10.31 55.49 0.57 -26.66 16 10 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 C 0.18 4.28 4.73 -3.07 -0.01 4.27 16 15 C 0.12 2.33 2.60 -65.96 -0.17 2.16 16 16 H 0.09 1.77 7.47 -51.93 -0.39 1.39 16 17 N -0.71 -11.71 3.77 -51.90 -0.20 -11.91 16 18 C 0.52 9.03 5.66 -10.99 -0.06 8.97 16 19 O -0.54 -11.39 15.81 5.55 0.09 -11.30 16 20 C -0.07 -0.90 2.57 -93.10 -0.24 -1.14 16 21 H 0.10 1.18 8.11 -51.93 -0.42 0.76 16 22 C -0.11 -1.40 5.08 -26.71 -0.14 -1.54 16 23 C -0.12 -1.17 5.98 -26.71 -0.16 -1.33 16 24 C -0.08 -0.78 5.67 -28.06 -0.16 -0.94 16 25 C -0.07 -0.78 5.74 -104.62 -0.60 -1.38 16 26 C -0.12 -1.25 9.61 -39.45 -0.38 -1.63 16 27 C -0.12 -1.21 10.05 -39.68 -0.40 -1.61 16 28 C -0.12 -1.31 10.05 -39.68 -0.40 -1.71 16 29 C -0.12 -1.45 9.04 -39.45 -0.36 -1.81 16 30 C -0.06 -0.77 5.42 -104.62 -0.57 -1.34 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 1.30 7.81 -51.93 -0.41 0.90 16 34 H 0.05 0.59 6.37 -51.93 -0.33 0.26 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.04 0.78 8.05 -51.93 -0.42 0.37 16 38 H 0.01 0.28 8.01 -51.93 -0.42 -0.14 16 39 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.05 1.32 7.41 -51.93 -0.38 0.93 16 41 H 0.05 1.47 7.37 -51.93 -0.38 1.09 16 42 H 0.39 5.64 6.90 -40.82 -0.28 5.36 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.08 1.22 7.52 -51.93 -0.39 0.83 16 45 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 46 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 47 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 49 H 0.12 0.94 8.05 -52.48 -0.42 0.52 16 50 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 51 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 52 H 0.12 1.50 6.64 -52.49 -0.35 1.15 16 LS Contribution 401.16 15.07 6.05 6.05 Total: -1.00 -32.54 401.16 -11.28 -43.83 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -8.78 Total: 5.90 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -3.41 Total: -7.59 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.20 Total: -54.04 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.54 -11.28 -43.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974753806.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.325 kcal (2) G-P(sol) polarization free energy of solvation -32.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds