Wall clock time and date at job start Wed Apr 1 2020 02:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 110.78140 * 2 1 4 4 C 1.54322 * 110.71841 * 236.75967 * 2 1 3 5 5 N 1.47028 * 107.27232 * 219.44717 * 4 2 1 6 6 C 1.36930 * 125.64905 * 178.98892 * 5 4 2 7 7 H 1.08000 * 119.99968 * 359.97438 * 6 5 4 8 8 C 1.38820 * 120.00182 * 179.97438 * 6 5 4 9 9 N 1.31625 * 119.99471 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00425 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46974 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47191 * 119.99726 * 10 8 6 13 13 H 1.48499 * 109.47453 * 240.00291 * 10 8 6 14 14 C 1.47425 * 108.69991 * 358.93932 * 5 4 2 15 15 C 1.54905 * 104.83564 * 24.12780 * 14 5 4 16 16 H 1.08996 * 111.03929 * 204.89671 * 15 14 5 17 17 N 1.46508 * 111.00340 * 81.06391 * 15 14 5 18 18 C 1.34775 * 120.00149 * 92.80333 * 17 15 14 19 19 O 1.21281 * 119.99559 * 5.02121 * 18 17 15 20 20 C 1.50697 * 120.00359 * 185.02140 * 18 17 15 21 21 H 1.09004 * 109.24988 * 337.08431 * 20 18 17 22 22 C 1.52798 * 109.24920 * 217.67149 * 20 18 17 23 23 C 1.53326 * 108.34175 * 188.58385 * 22 20 18 24 24 C 1.52727 * 108.43315 * 69.83472 * 23 22 20 25 25 C 1.50635 * 110.59879 * 308.93388 * 24 23 22 26 26 C 1.38913 * 117.75307 * 197.66327 * 25 24 23 27 27 C 1.37938 * 120.54061 * 180.25316 * 26 25 24 28 28 C 1.38264 * 119.77600 * 0.04420 * 27 26 25 29 29 C 1.37934 * 119.76936 * 359.87537 * 28 27 26 30 30 C 1.37656 * 122.56368 * 17.73424 * 25 24 23 31 31 H 1.09005 * 109.46948 * 296.76734 * 1 2 3 32 32 H 1.08994 * 109.47186 * 56.75845 * 1 2 3 33 33 H 1.08992 * 109.47502 * 176.76557 * 1 2 3 34 34 H 1.09006 * 109.46744 * 183.23786 * 3 2 1 35 35 H 1.08991 * 109.47073 * 303.23454 * 3 2 1 36 36 H 1.08997 * 109.47351 * 63.24385 * 3 2 1 37 37 H 1.08994 * 109.88238 * 338.85862 * 4 2 1 38 38 H 1.08997 * 109.88276 * 99.87462 * 4 2 1 39 39 H 0.97002 * 119.99201 * 180.02562 * 9 8 6 40 40 H 1.08998 * 110.36820 * 265.28882 * 14 5 4 41 41 H 1.09005 * 110.36717 * 142.96994 * 14 5 4 42 42 H 0.97002 * 119.99963 * 272.80630 * 17 15 14 43 43 H 1.09004 * 109.73563 * 68.85812 * 22 20 18 44 44 H 1.08994 * 109.66767 * 308.27414 * 22 20 18 45 45 H 1.08998 * 109.68380 * 310.08305 * 23 22 20 46 46 H 1.09006 * 109.67835 * 189.57553 * 23 22 20 47 47 H 1.09003 * 109.25185 * 69.22311 * 24 23 22 48 48 H 1.09000 * 109.25598 * 188.64786 * 24 23 22 49 49 H 1.07998 * 119.72959 * 0.24354 * 26 25 24 50 50 H 1.08002 * 120.11058 * 180.02562 * 27 26 25 51 51 H 1.08002 * 120.11475 * 179.85325 * 28 27 26 52 52 H 1.07996 * 119.73281 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0759 -0.7912 -1.2072 5 7 3.2444 -1.5509 -0.7390 6 6 4.0042 -2.3969 -1.5018 7 1 3.7611 -2.5507 -2.5428 8 6 5.0870 -3.0570 -0.9371 9 7 5.3830 -2.8700 0.3317 10 14 6.1232 -4.2117 -1.9774 11 1 5.5855 -4.2482 -3.3612 12 1 7.5269 -3.7280 -2.0050 13 1 6.0812 -5.5764 -1.3935 14 6 3.4632 -1.2499 0.6875 15 6 2.0790 -0.7954 1.2138 16 1 2.1844 -0.1520 2.0873 17 7 1.2270 -1.9488 1.5145 18 6 1.2024 -2.4617 2.7606 19 8 1.8139 -1.9147 3.6537 20 6 0.4151 -3.7150 3.0442 21 1 -0.3613 -3.8306 2.2878 22 6 -0.2376 -3.5993 4.4209 23 6 -0.8497 -4.9583 4.7805 24 6 0.2860 -5.9448 5.0443 25 6 1.2744 -5.9314 3.9076 26 6 2.1468 -7.0066 3.7963 27 6 3.0787 -7.0508 2.7803 28 6 3.1465 -6.0166 1.8652 29 6 2.2799 -4.9489 1.9731 30 6 1.3387 -4.9039 2.9938 31 1 -0.3633 0.4629 0.9176 32 1 -0.3633 0.5633 -0.8595 33 1 -0.3634 -1.0259 -0.0580 34 1 3.1610 1.4060 -0.0580 35 1 1.6752 1.9699 -0.8595 36 1 1.7692 1.9343 0.9176 37 1 1.3129 -1.4758 -1.5775 38 1 2.3715 -0.1026 -1.9988 39 1 6.1398 -3.3310 0.7262 40 1 4.1931 -0.4480 0.7985 41 1 3.7959 -2.1427 1.2170 42 1 0.6806 -2.3432 0.8168 43 1 -1.0192 -2.8399 4.3950 44 1 0.5144 -3.3278 5.1617 45 1 -1.4617 -5.3159 3.9525 46 1 -1.4645 -4.8587 5.6751 47 1 0.7957 -5.6677 5.9671 48 1 -0.1267 -6.9481 5.1497 49 1 2.0951 -7.8145 4.5112 50 1 3.7534 -7.8904 2.7001 51 1 3.8756 -6.0444 1.0689 52 1 2.3336 -4.1411 1.2582 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974753818.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:35 Heat of formation + Delta-G solvation = -0.942262 kcal Electronic energy + Delta-G solvation = -32107.005158 eV Core-core repulsion = 28263.999481 eV Total energy + Delta-G solvation = -3843.005677 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.48304 -39.13778 -37.75292 -35.68147 -33.80961 -33.14216 -32.23133 -30.69814 -30.00796 -28.90594 -27.99550 -26.79047 -25.61366 -24.36339 -23.18906 -22.49394 -22.05996 -20.46723 -19.80164 -19.20358 -18.55052 -16.93656 -16.65301 -16.29622 -15.71685 -15.24603 -15.17486 -14.59743 -14.31507 -13.98062 -13.95007 -13.69793 -13.66323 -13.32203 -13.15374 -12.97398 -12.80675 -12.57973 -12.29406 -12.09138 -11.94810 -11.87568 -11.70844 -11.48626 -11.28521 -11.20671 -11.12267 -10.99065 -10.89874 -10.79921 -10.52159 -10.37532 -10.19013 -10.18180 -9.94408 -9.80013 -9.69179 -9.34737 -8.69009 -8.37890 -8.31339 -8.23331 -6.81448 -5.63413 -3.06478 1.64994 1.75452 3.11834 3.36892 3.43832 3.45702 3.66406 4.12477 4.47260 4.67865 4.77051 4.92244 5.00048 5.08179 5.15925 5.25627 5.29883 5.32905 5.40025 5.45604 5.51878 5.53649 5.58897 5.63119 5.70285 5.81862 5.82858 5.89518 5.90797 5.96527 6.03878 6.05488 6.11309 6.13827 6.20151 6.27880 6.36152 6.38092 6.43093 6.46271 6.49299 6.62381 6.70915 6.77966 6.81186 6.92519 7.01641 7.02997 7.38109 7.50059 7.62904 7.87222 8.06328 8.37376 8.75132 9.21537 9.82793 10.47369 11.38411 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009140 B = 0.005475 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3062.667814 B = 5112.839625 C = 7581.956437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.088 4.088 3 C -0.128 4.128 4 C 0.143 3.857 5 N -0.600 5.600 6 C -0.224 4.224 7 H 0.076 0.924 8 C -0.005 4.005 9 N -0.912 5.912 10 Si 0.906 3.094 11 H -0.281 1.281 12 H -0.292 1.292 13 H -0.291 1.291 14 C 0.145 3.855 15 C 0.122 3.878 16 H 0.087 0.913 17 N -0.703 5.703 18 C 0.523 3.477 19 O -0.541 6.541 20 C -0.061 4.061 21 H 0.092 0.908 22 C -0.104 4.104 23 C -0.117 4.117 24 C -0.078 4.078 25 C -0.076 4.076 26 C -0.131 4.131 27 C -0.121 4.121 28 C -0.107 4.107 29 C -0.098 4.098 30 C -0.072 4.072 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.021 0.979 38 H 0.022 0.978 39 H 0.251 0.749 40 H 0.019 0.981 41 H 0.114 0.886 42 H 0.396 0.604 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.071 0.929 49 H 0.115 0.885 50 H 0.116 0.884 51 H 0.124 0.876 52 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.533 -2.783 6.037 15.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 C -0.186 4.186 4 C 0.017 3.983 5 N -0.326 5.326 6 C -0.352 4.352 7 H 0.093 0.907 8 C -0.202 4.202 9 N -0.560 5.560 10 Si 0.737 3.263 11 H -0.207 1.207 12 H -0.219 1.219 13 H -0.218 1.218 14 C 0.020 3.980 15 C 0.016 3.984 16 H 0.105 0.895 17 N -0.353 5.353 18 C 0.309 3.691 19 O -0.418 6.418 20 C -0.083 4.083 21 H 0.110 0.890 22 C -0.142 4.142 23 C -0.154 4.154 24 C -0.115 4.115 25 C -0.076 4.076 26 C -0.149 4.149 27 C -0.139 4.139 28 C -0.125 4.125 29 C -0.116 4.116 30 C -0.072 4.072 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.062 0.938 40 H 0.037 0.963 41 H 0.132 0.868 42 H 0.230 0.770 43 H 0.086 0.914 44 H 0.100 0.900 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.089 0.911 49 H 0.133 0.867 50 H 0.135 0.865 51 H 0.142 0.858 52 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.880 -2.521 6.676 14.724 hybrid contribution 0.631 -0.767 -1.149 1.519 sum -12.249 -3.288 5.526 13.834 Atomic orbital electron populations 1.21699 0.94656 1.01183 1.01168 1.21843 0.94817 0.95713 0.96527 1.21681 1.01866 0.94206 1.00807 1.21398 0.90294 0.92950 0.93637 1.44457 1.30613 1.50198 1.07305 1.19047 1.06430 1.16883 0.92850 0.90661 1.24733 0.98621 1.00544 0.96255 1.69813 1.29767 1.45897 1.10571 0.86137 0.80357 0.80610 0.79234 1.20672 1.21865 1.21780 1.22327 0.89236 1.01364 0.85109 1.22538 0.93198 0.86388 0.96258 0.89453 1.45908 1.45805 1.33020 1.10537 1.20236 0.81357 0.84916 0.82609 1.90659 1.44875 1.61210 1.45036 1.20143 0.96766 0.91497 0.99848 0.89041 1.21460 1.00101 0.97155 0.95513 1.21534 0.97288 0.94991 1.01592 1.20447 0.94895 0.99708 0.96472 1.19436 0.97613 0.94283 0.96234 1.20990 0.96732 0.98205 0.98965 1.21079 0.98538 0.98823 0.95462 1.21145 0.98591 0.93609 0.99118 1.21528 0.93878 0.98645 0.97521 1.19084 0.97600 0.94358 0.96187 0.92893 0.92858 0.92942 0.91809 0.92793 0.93120 0.96124 0.95967 0.93775 0.96323 0.86839 0.76958 0.91414 0.90021 0.91642 0.91309 0.90752 0.91079 0.86667 0.86545 0.85793 0.84523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 8.07 37.16 0.30 -1.38 16 2 C -0.09 -1.43 0.80 -152.68 -0.12 -1.55 16 3 C -0.13 -1.93 8.41 37.16 0.31 -1.62 16 4 C 0.14 2.78 6.41 -3.06 -0.02 2.76 16 5 N -0.60 -14.34 3.39 -170.07 -0.58 -14.92 16 6 C -0.22 -5.93 10.27 -15.06 -0.15 -6.08 16 7 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 8 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 9 N -0.91 -25.76 10.09 55.49 0.56 -25.20 16 10 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 C 0.15 3.45 5.27 -2.53 -0.01 3.44 16 15 C 0.12 2.30 2.71 -65.78 -0.18 2.12 16 16 H 0.09 1.73 7.38 -51.93 -0.38 1.35 16 17 N -0.70 -12.02 3.78 -51.73 -0.20 -12.21 16 18 C 0.52 9.35 5.67 -10.99 -0.06 9.29 16 19 O -0.54 -11.68 15.76 5.56 0.09 -11.59 16 20 C -0.06 -0.90 2.59 -93.06 -0.24 -1.14 16 21 H 0.09 1.13 8.06 -51.93 -0.42 0.71 16 22 C -0.10 -1.32 5.09 -26.67 -0.14 -1.45 16 23 C -0.12 -1.18 5.97 -26.70 -0.16 -1.34 16 24 C -0.08 -0.87 5.67 -28.05 -0.16 -1.03 16 25 C -0.08 -1.10 5.74 -104.62 -0.60 -1.70 16 26 C -0.13 -1.85 9.61 -39.44 -0.38 -2.23 16 27 C -0.12 -1.87 10.05 -39.68 -0.40 -2.27 16 28 C -0.11 -1.95 10.05 -39.68 -0.40 -2.35 16 29 C -0.10 -1.84 9.05 -39.44 -0.36 -2.20 16 30 C -0.07 -1.18 5.42 -104.62 -0.57 -1.74 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.65 6.48 -51.93 -0.34 0.31 16 34 H 0.06 1.09 7.57 -51.93 -0.39 0.70 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.02 0.39 7.76 -51.93 -0.40 -0.01 16 38 H 0.02 0.44 7.84 -51.93 -0.41 0.04 16 39 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.02 0.49 7.80 -51.93 -0.41 0.09 16 41 H 0.11 3.11 5.87 -51.93 -0.31 2.80 16 42 H 0.40 6.12 7.12 -40.82 -0.29 5.83 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.08 1.20 7.52 -51.93 -0.39 0.81 16 45 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 49 H 0.12 1.31 8.05 -52.49 -0.42 0.89 16 50 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 51 H 0.12 2.41 8.06 -52.49 -0.42 1.98 16 52 H 0.14 2.89 6.67 -52.49 -0.35 2.54 16 LS Contribution 399.85 15.07 6.03 6.03 Total: -1.00 -30.48 399.85 -11.25 -41.73 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -8.70 Total: 10.33 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -3.43 Total: -10.73 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: -0.21 Total: -52.33 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.48 -11.25 -41.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974753818.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.790 kcal (2) G-P(sol) polarization free energy of solvation -30.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds