Wall clock time and date at job start Wed Apr 1 2020 02:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 110.92080 * 2 1 4 4 C 1.54915 * 111.00657 * 236.09445 * 2 1 3 5 5 N 1.47423 * 104.83236 * 278.94032 * 4 2 1 6 6 C 1.36934 * 125.65198 * 155.90979 * 5 4 2 7 7 H 1.08006 * 119.99724 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00356 * 179.97438 * 6 5 4 9 9 N 1.31621 * 119.99869 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00078 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47019 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46911 * 119.99848 * 10 8 6 13 13 H 1.48500 * 109.47161 * 240.00161 * 10 8 6 14 14 C 1.47488 * 108.75965 * 335.89149 * 5 4 2 15 15 C 1.54327 * 107.03319 * 1.02356 * 14 5 4 16 16 H 1.09005 * 110.71684 * 140.69863 * 15 14 5 17 17 N 1.46505 * 110.71978 * 263.79013 * 15 14 5 18 18 C 1.34781 * 119.99607 * 271.15612 * 17 15 14 19 19 O 1.21274 * 120.00202 * 5.86281 * 18 17 15 20 20 C 1.50700 * 119.99426 * 185.85685 * 18 17 15 21 21 C 1.50705 * 112.91149 * 283.25103 * 20 18 17 22 22 C 1.38233 * 120.00154 * 124.28487 * 21 20 18 23 23 C 1.38234 * 120.00004 * 179.78595 * 22 21 20 24 24 C 1.38234 * 119.99617 * 0.45369 * 23 22 21 25 25 C 1.38237 * 120.00253 * 359.80055 * 24 23 22 26 26 C 1.38232 * 119.99527 * 304.56425 * 21 20 18 27 27 C 1.53776 * 113.61257 * 151.99795 * 20 18 17 28 28 C 1.53775 * 87.08413 * 270.88268 * 27 20 18 29 29 C 1.53783 * 87.08094 * 334.56696 * 28 27 20 30 30 H 1.09001 * 109.47005 * 296.10166 * 1 2 3 31 31 H 1.09005 * 109.46924 * 56.09583 * 1 2 3 32 32 H 1.08993 * 109.47659 * 176.09861 * 1 2 3 33 33 H 1.09003 * 109.47574 * 183.89941 * 3 2 1 34 34 H 1.09004 * 109.46731 * 303.89899 * 3 2 1 35 35 H 1.09001 * 109.47258 * 63.89712 * 3 2 1 36 36 H 1.09003 * 110.36154 * 37.77579 * 4 2 1 37 37 H 1.08991 * 110.36919 * 160.09963 * 4 2 1 38 38 H 0.97000 * 119.99715 * 180.02562 * 9 8 6 39 39 H 1.09005 * 110.03295 * 241.66869 * 14 5 4 40 40 H 1.08999 * 109.97026 * 120.35221 * 14 5 4 41 41 H 0.96996 * 119.99768 * 91.15737 * 17 15 14 42 42 H 1.08001 * 119.99773 * 0.02562 * 22 21 20 43 43 H 1.07992 * 120.00011 * 180.27581 * 23 22 21 44 44 H 1.08002 * 119.99791 * 179.83402 * 24 23 22 45 45 H 1.08006 * 119.99691 * 180.02562 * 25 24 23 46 46 H 1.08000 * 120.00439 * 359.97438 * 26 21 20 47 47 H 1.09003 * 113.61582 * 25.43334 * 27 20 18 48 48 H 1.09005 * 113.61644 * 156.33681 * 27 20 18 49 49 H 1.08998 * 113.62170 * 220.01745 * 28 27 20 50 50 H 1.08999 * 113.68925 * 89.12720 * 28 27 20 51 51 H 1.08993 * 113.61332 * 270.88206 * 29 28 27 52 52 H 1.09005 * 113.68717 * 139.98940 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0763 1.4291 0.0000 4 6 2.0853 -0.8067 -1.2003 5 7 2.0138 -2.2159 -0.7733 6 6 1.9460 -3.3001 -1.6070 7 1 1.9414 -3.1584 -2.6777 8 6 1.8832 -4.5811 -1.0761 9 7 1.8882 -4.7537 0.2287 10 14 1.7899 -6.0600 -2.2136 11 1 1.7987 -5.5999 -3.6255 12 1 2.9595 -6.9432 -1.9740 13 1 0.5381 -6.8126 -1.9455 14 6 2.0278 -2.2662 0.7007 15 6 2.0861 -0.8079 1.2022 16 1 1.4540 -0.6767 2.0806 17 7 3.4667 -0.4156 1.4963 18 6 3.9810 -0.6293 2.7236 19 8 3.3400 -1.2409 3.5517 20 6 5.3529 -0.1084 3.0667 21 6 6.4614 -0.9415 2.4765 22 6 7.4164 -0.3504 1.6707 23 6 8.4356 -1.1138 1.1330 24 6 8.4945 -2.4701 1.3935 25 6 7.5365 -3.0622 2.1951 26 6 6.5198 -2.2979 2.7364 27 6 5.5401 0.1954 4.5625 28 6 5.0201 1.6106 4.2597 29 6 5.5183 1.4005 2.8201 30 1 -0.3633 0.4521 0.9229 31 1 -0.3633 0.5733 -0.8530 32 1 -0.3634 -1.0252 -0.0699 33 1 3.1637 1.4025 -0.0699 34 1 1.6706 1.9731 -0.8530 35 1 1.7837 1.9300 0.9229 36 1 1.4672 -0.6462 -2.0837 37 1 3.1182 -0.5235 -1.4024 38 1 1.8447 -5.6490 0.5996 39 1 2.9050 -2.8127 1.0474 40 1 1.1205 -2.7477 1.0654 41 1 4.0104 -0.0022 0.8077 42 1 7.3683 0.7086 1.4643 43 1 9.1842 -0.6512 0.5070 44 1 9.2893 -3.0671 0.9712 45 1 7.5828 -4.1218 2.3990 46 1 5.7713 -2.7606 3.3627 47 1 4.8815 -0.3823 5.2111 48 1 6.5808 0.1725 4.8858 49 1 5.5531 2.3957 4.7960 50 1 3.9371 1.7052 4.3375 51 1 6.5530 1.7071 2.6670 52 1 4.8431 1.7955 2.0610 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974787185.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:19 Heat of formation + Delta-G solvation = 36.031276 kcal Electronic energy + Delta-G solvation = -31884.311765 eV Core-core repulsion = 28042.909381 eV Total energy + Delta-G solvation = -3841.402384 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.96227 -39.08753 -38.11587 -36.78440 -33.81914 -32.93308 -31.19845 -30.82734 -30.65400 -28.24312 -26.95870 -25.98944 -25.69664 -25.54958 -23.44639 -22.42141 -21.75364 -21.22039 -20.06296 -19.14732 -18.30035 -17.33949 -16.67360 -16.48415 -15.80294 -15.46435 -14.92041 -14.72639 -14.54087 -14.30493 -13.90376 -13.85683 -13.64987 -13.36515 -13.32046 -13.16528 -12.70923 -12.51058 -12.43533 -12.04597 -11.97543 -11.88178 -11.65819 -11.54257 -11.35488 -11.06908 -11.04406 -10.97611 -10.92877 -10.76960 -10.46173 -10.36657 -10.28175 -10.19743 -9.98092 -9.83351 -9.61249 -9.45442 -8.80489 -8.61198 -8.54503 -8.36673 -6.78232 -5.64955 -2.99475 1.41333 1.51732 3.00647 3.42008 3.47090 3.49968 3.52357 3.86046 4.41930 4.53116 4.56957 4.65947 4.75955 4.90613 4.97300 5.07964 5.12953 5.25094 5.28365 5.32734 5.36824 5.56753 5.58045 5.60627 5.62610 5.66318 5.72821 5.78080 5.83087 5.92970 6.02406 6.04643 6.05007 6.07423 6.15072 6.17541 6.20937 6.25314 6.29448 6.41187 6.54627 6.60214 6.63696 6.64409 6.69627 6.70495 6.79972 6.99591 7.09142 7.59896 7.69934 7.87919 8.00739 8.29360 8.66970 9.25618 9.86831 10.52519 11.45631 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009444 B = 0.004694 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.035716 B = 5963.403223 C = 7673.454958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.089 4.089 3 C -0.130 4.130 4 C 0.145 3.855 5 N -0.602 5.602 6 C -0.228 4.228 7 H 0.077 0.923 8 C -0.007 4.007 9 N -0.917 5.917 10 Si 0.908 3.092 11 H -0.281 1.281 12 H -0.292 1.292 13 H -0.291 1.291 14 C 0.177 3.823 15 C 0.125 3.875 16 H 0.085 0.915 17 N -0.703 5.703 18 C 0.542 3.458 19 O -0.535 6.535 20 C -0.067 4.067 21 C -0.063 4.063 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.122 4.122 25 C -0.113 4.113 26 C -0.099 4.099 27 C -0.111 4.111 28 C -0.140 4.140 29 C -0.130 4.130 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.040 0.960 37 H 0.014 0.986 38 H 0.251 0.749 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.395 0.605 42 H 0.124 0.876 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.084 0.916 48 H 0.087 0.913 49 H 0.071 0.929 50 H 0.082 0.918 51 H 0.093 0.907 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.026 14.750 5.078 18.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C -0.188 4.188 4 C 0.018 3.982 5 N -0.329 5.329 6 C -0.356 4.356 7 H 0.095 0.905 8 C -0.203 4.203 9 N -0.564 5.564 10 Si 0.739 3.261 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.218 1.218 14 C 0.052 3.948 15 C 0.020 3.980 16 H 0.103 0.897 17 N -0.353 5.353 18 C 0.327 3.673 19 O -0.411 6.411 20 C -0.070 4.070 21 C -0.064 4.064 22 C -0.135 4.135 23 C -0.140 4.140 24 C -0.140 4.140 25 C -0.131 4.131 26 C -0.117 4.117 27 C -0.149 4.149 28 C -0.178 4.178 29 C -0.167 4.167 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.032 0.968 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.230 0.770 42 H 0.142 0.858 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.103 0.897 48 H 0.105 0.895 49 H 0.090 0.910 50 H 0.100 0.900 51 H 0.112 0.888 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.513 14.074 5.688 17.914 hybrid contribution 0.292 -0.889 -1.056 1.411 sum 9.805 13.185 4.632 17.071 Atomic orbital electron populations 1.21591 0.93315 1.02936 1.00448 1.22005 0.96305 0.94088 0.96687 1.21674 1.00194 0.95638 1.01295 1.21610 0.96451 0.85850 0.94264 1.44541 1.86878 0.99620 1.01834 1.19055 1.43667 0.84031 0.88882 0.90534 1.24789 1.02325 0.97298 0.95901 1.69979 1.56770 1.20584 1.09092 0.86102 0.77224 0.83159 0.79618 1.20588 1.21876 1.21800 1.21578 1.01549 0.88505 0.83166 1.22475 0.80981 0.97690 0.96864 0.89690 1.45914 1.14744 1.62401 1.12264 1.19552 0.86175 0.79298 0.82292 1.90692 1.61159 1.40083 1.49174 1.20911 0.92029 0.95210 0.98829 1.19294 0.95270 0.93711 0.98113 1.21026 0.94842 0.99950 0.97688 1.21060 0.98578 0.94191 1.00162 1.21143 0.99102 0.95072 0.98646 1.21158 0.94661 0.99889 0.97414 1.21106 0.97978 0.93289 0.99366 1.22848 1.02015 0.96535 0.93513 1.22824 1.01343 0.97315 0.96283 1.23102 1.02390 0.93081 0.98124 0.93397 0.92913 0.91197 0.93123 0.92669 0.92879 0.94179 0.96846 0.93822 0.93262 0.92983 0.76996 0.85807 0.86233 0.86313 0.86034 0.85785 0.89717 0.89472 0.91030 0.89981 0.88817 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.57 37.16 0.32 -1.68 16 2 C -0.09 -1.48 0.83 -152.36 -0.13 -1.61 16 3 C -0.13 -1.67 8.22 37.16 0.31 -1.36 16 4 C 0.14 2.89 6.14 -2.53 -0.02 2.88 16 5 N -0.60 -15.16 3.39 -169.69 -0.58 -15.74 16 6 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16 7 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 8 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 9 N -0.92 -27.63 10.31 55.49 0.57 -27.06 16 10 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 C 0.18 4.42 4.82 -2.81 -0.01 4.40 16 15 C 0.12 2.40 2.49 -66.09 -0.16 2.23 16 16 H 0.09 1.70 7.62 -51.93 -0.40 1.30 16 17 N -0.70 -11.93 4.26 -52.03 -0.22 -12.15 16 18 C 0.54 9.39 6.06 -10.98 -0.07 9.33 16 19 O -0.53 -11.31 15.87 5.56 0.09 -11.22 16 20 C -0.07 -0.89 0.97 -156.00 -0.15 -1.04 16 21 C -0.06 -0.89 4.95 -104.62 -0.52 -1.40 16 22 C -0.12 -1.41 9.14 -39.58 -0.36 -1.77 16 23 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 24 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16 25 C -0.11 -1.61 10.05 -39.58 -0.40 -2.01 16 26 C -0.10 -1.55 9.37 -39.59 -0.37 -1.93 16 27 C -0.11 -1.34 7.13 -25.92 -0.18 -1.52 16 28 C -0.14 -1.43 7.80 -25.92 -0.20 -1.63 16 29 C -0.13 -1.31 6.46 -25.92 -0.17 -1.48 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.33 7.91 -51.93 -0.41 0.92 16 33 H 0.05 0.61 6.43 -51.93 -0.33 0.27 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.04 0.79 8.05 -51.93 -0.42 0.37 16 37 H 0.01 0.27 7.98 -51.93 -0.41 -0.14 16 38 H 0.25 7.41 8.31 -40.82 -0.34 7.08 16 39 H 0.05 1.42 7.41 -51.93 -0.38 1.04 16 40 H 0.05 1.47 7.39 -51.93 -0.38 1.08 16 41 H 0.40 6.07 6.79 -40.82 -0.28 5.79 16 42 H 0.12 1.18 5.97 -52.49 -0.31 0.86 16 43 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 45 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 46 H 0.12 2.12 8.03 -52.49 -0.42 1.70 16 47 H 0.08 1.17 7.42 -51.93 -0.39 0.79 16 48 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 49 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 51 H 0.09 0.78 6.24 -51.93 -0.32 0.46 16 52 H 0.07 0.73 7.73 -51.93 -0.40 0.33 16 LS Contribution 405.80 15.07 6.12 6.12 Total: -1.00 -32.65 405.80 -10.84 -43.50 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -8.64 Total: 8.22 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -3.16 Total: -9.15 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.22 Total: -54.95 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.65 -10.84 -43.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974787185.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.529 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds