Wall clock time and date at job start Wed Apr 1 2020 02:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 110.92080 * 2 1 4 4 C 1.54915 * 111.00657 * 236.09445 * 2 1 3 5 5 N 1.47423 * 104.83236 * 278.94032 * 4 2 1 6 6 C 1.36934 * 125.65198 * 155.90979 * 5 4 2 7 7 H 1.08006 * 119.99724 * 359.97438 * 6 5 4 8 8 C 1.38810 * 120.00356 * 179.97438 * 6 5 4 9 9 N 1.31621 * 119.99869 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00078 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47019 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46911 * 119.99848 * 10 8 6 13 13 H 1.48500 * 109.47161 * 240.00161 * 10 8 6 14 14 C 1.47488 * 108.75965 * 335.89149 * 5 4 2 15 15 C 1.54327 * 107.03319 * 1.02356 * 14 5 4 16 16 H 1.09005 * 110.71684 * 140.69863 * 15 14 5 17 17 N 1.46505 * 110.71978 * 263.79013 * 15 14 5 18 18 C 1.34781 * 119.99607 * 271.15612 * 17 15 14 19 19 O 1.21274 * 120.00202 * 5.86281 * 18 17 15 20 20 C 1.50700 * 119.99426 * 185.85685 * 18 17 15 21 21 C 1.50705 * 112.91149 * 283.25103 * 20 18 17 22 22 C 1.38233 * 120.00154 * 124.28487 * 21 20 18 23 23 C 1.38234 * 120.00004 * 179.78595 * 22 21 20 24 24 C 1.38234 * 119.99617 * 0.45369 * 23 22 21 25 25 C 1.38237 * 120.00253 * 359.80055 * 24 23 22 26 26 C 1.38232 * 119.99527 * 304.56425 * 21 20 18 27 27 C 1.53776 * 113.61257 * 151.99795 * 20 18 17 28 28 C 1.53775 * 87.08413 * 270.88268 * 27 20 18 29 29 C 1.53783 * 87.08094 * 334.56696 * 28 27 20 30 30 H 1.09001 * 109.47005 * 296.10166 * 1 2 3 31 31 H 1.09005 * 109.46924 * 56.09583 * 1 2 3 32 32 H 1.08993 * 109.47659 * 176.09861 * 1 2 3 33 33 H 1.09003 * 109.47574 * 183.89941 * 3 2 1 34 34 H 1.09004 * 109.46731 * 303.89899 * 3 2 1 35 35 H 1.09001 * 109.47258 * 63.89712 * 3 2 1 36 36 H 1.09003 * 110.36154 * 37.77579 * 4 2 1 37 37 H 1.08991 * 110.36919 * 160.09963 * 4 2 1 38 38 H 0.97000 * 119.99715 * 180.02562 * 9 8 6 39 39 H 1.09005 * 110.03295 * 241.66869 * 14 5 4 40 40 H 1.08999 * 109.97026 * 120.35221 * 14 5 4 41 41 H 0.96996 * 119.99768 * 91.15737 * 17 15 14 42 42 H 1.08001 * 119.99773 * 0.02562 * 22 21 20 43 43 H 1.07992 * 120.00011 * 180.27581 * 23 22 21 44 44 H 1.08002 * 119.99791 * 179.83402 * 24 23 22 45 45 H 1.08006 * 119.99691 * 180.02562 * 25 24 23 46 46 H 1.08000 * 120.00439 * 359.97438 * 26 21 20 47 47 H 1.09003 * 113.61582 * 25.43334 * 27 20 18 48 48 H 1.09005 * 113.61644 * 156.33681 * 27 20 18 49 49 H 1.08998 * 113.62170 * 220.01745 * 28 27 20 50 50 H 1.08999 * 113.68925 * 89.12720 * 28 27 20 51 51 H 1.08993 * 113.61332 * 270.88206 * 29 28 27 52 52 H 1.09005 * 113.68717 * 139.98940 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0763 1.4291 0.0000 4 6 2.0853 -0.8067 -1.2003 5 7 2.0138 -2.2159 -0.7733 6 6 1.9460 -3.3001 -1.6070 7 1 1.9414 -3.1584 -2.6777 8 6 1.8832 -4.5811 -1.0761 9 7 1.8882 -4.7537 0.2287 10 14 1.7899 -6.0600 -2.2136 11 1 1.7987 -5.5999 -3.6255 12 1 2.9595 -6.9432 -1.9740 13 1 0.5381 -6.8126 -1.9455 14 6 2.0278 -2.2662 0.7007 15 6 2.0861 -0.8079 1.2022 16 1 1.4540 -0.6767 2.0806 17 7 3.4667 -0.4156 1.4963 18 6 3.9810 -0.6293 2.7236 19 8 3.3400 -1.2409 3.5517 20 6 5.3529 -0.1084 3.0667 21 6 6.4614 -0.9415 2.4765 22 6 7.4164 -0.3504 1.6707 23 6 8.4356 -1.1138 1.1330 24 6 8.4945 -2.4701 1.3935 25 6 7.5365 -3.0622 2.1951 26 6 6.5198 -2.2979 2.7364 27 6 5.5401 0.1954 4.5625 28 6 5.0201 1.6106 4.2597 29 6 5.5183 1.4005 2.8201 30 1 -0.3633 0.4521 0.9229 31 1 -0.3633 0.5733 -0.8530 32 1 -0.3634 -1.0252 -0.0699 33 1 3.1637 1.4025 -0.0699 34 1 1.6706 1.9731 -0.8530 35 1 1.7837 1.9300 0.9229 36 1 1.4672 -0.6462 -2.0837 37 1 3.1182 -0.5235 -1.4024 38 1 1.8447 -5.6490 0.5996 39 1 2.9050 -2.8127 1.0474 40 1 1.1205 -2.7477 1.0654 41 1 4.0104 -0.0022 0.8077 42 1 7.3683 0.7086 1.4643 43 1 9.1842 -0.6512 0.5070 44 1 9.2893 -3.0671 0.9712 45 1 7.5828 -4.1218 2.3990 46 1 5.7713 -2.7606 3.3627 47 1 4.8815 -0.3823 5.2111 48 1 6.5808 0.1725 4.8858 49 1 5.5531 2.3957 4.7960 50 1 3.9371 1.7052 4.3375 51 1 6.5530 1.7071 2.6670 52 1 4.8431 1.7955 2.0610 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974787185.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:18 Heat of formation + Delta-G solvation = 17.210707 kcal Electronic energy + Delta-G solvation = -31885.127886 eV Core-core repulsion = 28042.909381 eV Total energy + Delta-G solvation = -3842.218505 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.14064 -40.49803 -39.35385 -38.02820 -35.69964 -34.46558 -32.60779 -32.19509 -31.84040 -29.96085 -28.17212 -27.50659 -26.97316 -26.66774 -25.09347 -23.54364 -22.92670 -22.41015 -21.80689 -20.55326 -19.60366 -18.70266 -18.37360 -17.63798 -17.35819 -16.77693 -16.39985 -15.93796 -15.74925 -15.64270 -15.54732 -15.42665 -14.94564 -14.73098 -14.45111 -14.32326 -13.95087 -13.82468 -13.74606 -13.44725 -13.34448 -13.16010 -12.96161 -12.94015 -12.78682 -12.73067 -12.58468 -12.48528 -12.08997 -12.03763 -11.86556 -11.85427 -11.75417 -11.52731 -11.39465 -11.32306 -11.23004 -10.87024 -10.72695 -9.97979 -9.83753 -9.60701 -8.90518 -7.84854 -5.21495 0.38165 0.48026 1.40603 1.42102 1.52447 1.63160 2.17817 2.46930 2.83061 3.33457 3.46041 3.48924 3.62157 3.66099 3.72699 3.82929 3.89230 3.96696 4.07190 4.11449 4.12988 4.27418 4.39352 4.42234 4.51789 4.62635 4.66151 4.70280 4.78310 4.84923 4.86092 4.88397 4.95184 5.03444 5.05511 5.06667 5.08491 5.13373 5.14120 5.16595 5.17627 5.32107 5.35701 5.43711 5.45056 5.55755 5.56725 5.61226 5.64929 5.70873 5.76129 6.09686 6.15408 6.59722 7.05801 7.29071 7.76273 8.41118 9.24442 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009444 B = 0.004694 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.035716 B = 5963.403223 C = 7673.454958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.073 4.073 3 C -0.123 4.123 4 C 0.139 3.861 5 N -0.619 5.619 6 C -0.234 4.234 7 H 0.088 0.912 8 C -0.071 4.071 9 N -0.954 5.954 10 Si 0.975 3.025 11 H -0.259 1.259 12 H -0.297 1.297 13 H -0.294 1.294 14 C 0.197 3.803 15 C 0.138 3.862 16 H 0.074 0.926 17 N -0.693 5.693 18 C 0.537 3.463 19 O -0.585 6.585 20 C -0.073 4.073 21 C -0.072 4.072 22 C -0.111 4.111 23 C -0.116 4.116 24 C -0.126 4.126 25 C -0.134 4.134 26 C -0.134 4.134 27 C -0.116 4.116 28 C -0.131 4.131 29 C -0.112 4.112 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.027 0.973 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.049 0.951 37 H 0.028 0.972 38 H 0.241 0.759 39 H -0.005 1.005 40 H 0.001 0.999 41 H 0.407 0.593 42 H 0.162 0.838 43 H 0.157 0.843 44 H 0.142 0.858 45 H 0.118 0.882 46 H 0.085 0.915 47 H 0.052 0.948 48 H 0.105 0.895 49 H 0.101 0.899 50 H 0.067 0.933 51 H 0.126 0.874 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.227 19.268 2.594 22.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.074 4.074 3 C -0.180 4.180 4 C 0.014 3.986 5 N -0.345 5.345 6 C -0.363 4.363 7 H 0.105 0.895 8 C -0.263 4.263 9 N -0.604 5.604 10 Si 0.804 3.196 11 H -0.183 1.183 12 H -0.225 1.225 13 H -0.222 1.222 14 C 0.071 3.929 15 C 0.031 3.969 16 H 0.092 0.908 17 N -0.343 5.343 18 C 0.325 3.675 19 O -0.465 6.465 20 C -0.076 4.076 21 C -0.072 4.072 22 C -0.128 4.128 23 C -0.134 4.134 24 C -0.144 4.144 25 C -0.153 4.153 26 C -0.153 4.153 27 C -0.154 4.154 28 C -0.169 4.169 29 C -0.149 4.149 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.013 0.987 40 H 0.019 0.981 41 H 0.245 0.755 42 H 0.179 0.821 43 H 0.175 0.825 44 H 0.160 0.840 45 H 0.136 0.864 46 H 0.103 0.897 47 H 0.071 0.929 48 H 0.123 0.877 49 H 0.120 0.880 50 H 0.085 0.915 51 H 0.144 0.856 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.733 18.654 3.156 22.262 hybrid contribution -0.388 -2.365 -0.279 2.412 sum 11.345 16.289 2.877 20.058 Atomic orbital electron populations 1.21590 0.92844 1.00956 1.02696 1.21985 0.96640 0.96015 0.92805 1.21654 1.00986 0.92151 1.03250 1.21890 0.97523 0.83278 0.95928 1.44785 1.86514 1.01605 1.01636 1.19519 1.41910 0.85067 0.89774 0.89465 1.25673 1.03070 1.00383 0.97207 1.70266 1.58671 1.20243 1.11170 0.85049 0.76443 0.79382 0.78755 1.18273 1.22472 1.22173 1.21099 0.96658 0.91584 0.83604 1.22077 0.82639 0.94634 0.97501 0.90826 1.45752 1.13891 1.62006 1.12668 1.20390 0.87463 0.78078 0.81609 1.90667 1.62996 1.42134 1.50686 1.20925 0.88922 0.97688 1.00049 1.19403 0.96199 0.92768 0.98856 1.21419 0.93670 1.01743 0.95996 1.21547 0.98849 0.93589 0.99427 1.21475 0.98846 0.96263 0.97800 1.21294 0.95379 1.00025 0.98557 1.21036 0.98367 0.95026 1.00838 1.22921 1.02504 0.97784 0.92148 1.22779 1.00768 0.96457 0.96870 1.23173 1.04533 0.89069 0.98150 0.91579 0.90119 0.95392 0.91792 0.90186 0.91403 0.93254 0.95382 0.94948 0.98657 0.98051 0.75538 0.82081 0.82502 0.83984 0.86369 0.89656 0.92944 0.87679 0.88037 0.91474 0.85641 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.79 8.57 71.98 0.62 -3.17 16 2 C -0.07 -2.31 0.83 -50.79 -0.04 -2.35 16 3 C -0.12 -2.58 8.22 71.98 0.59 -1.99 16 4 C 0.14 5.36 6.14 86.86 0.53 5.89 16 5 N -0.62 -32.19 3.39 -690.79 -2.34 -34.54 16 6 C -0.23 -13.37 10.28 84.03 0.86 -12.50 16 7 H 0.09 4.70 7.83 -2.91 -0.02 4.68 16 8 C -0.07 -4.23 5.49 84.86 0.47 -3.76 16 9 N -0.95 -61.85 10.31 21.65 0.22 -61.62 16 10 Si 0.97 47.85 29.55 68.60 2.03 49.88 16 11 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 12 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 13 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 14 C 0.20 10.57 4.82 86.64 0.42 10.99 16 15 C 0.14 5.47 2.49 46.18 0.12 5.59 16 16 H 0.07 3.11 7.62 -2.38 -0.02 3.09 16 17 N -0.69 -23.62 4.26 -436.90 -1.86 -25.48 16 18 C 0.54 19.43 6.06 87.66 0.53 19.97 16 19 O -0.59 -27.08 15.87 -3.01 -0.05 -27.13 16 20 C -0.07 -1.91 0.97 -53.15 -0.05 -1.96 16 21 C -0.07 -1.97 4.95 -19.87 -0.10 -2.07 16 22 C -0.11 -2.26 9.14 22.27 0.20 -2.05 16 23 C -0.12 -2.28 10.05 22.27 0.22 -2.06 16 24 C -0.13 -2.97 10.05 22.27 0.22 -2.74 16 25 C -0.13 -4.04 10.05 22.27 0.22 -3.81 16 26 C -0.13 -4.55 9.37 22.27 0.21 -4.34 16 27 C -0.12 -2.76 7.13 31.12 0.22 -2.54 16 28 C -0.13 -2.34 7.80 31.12 0.24 -2.10 16 29 C -0.11 -1.81 6.46 31.12 0.20 -1.61 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.03 1.07 7.91 -2.39 -0.02 1.05 16 33 H 0.06 1.20 6.43 -2.39 -0.02 1.18 16 34 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.05 1.83 8.05 -2.39 -0.02 1.82 16 37 H 0.03 1.04 7.98 -2.39 -0.02 1.02 16 38 H 0.24 15.39 8.31 -92.71 -0.77 14.62 16 39 H 0.00 -0.31 7.41 -2.38 -0.02 -0.32 16 40 H 0.00 0.08 7.39 -2.39 -0.02 0.07 16 41 H 0.41 11.72 6.79 -92.71 -0.63 11.09 16 42 H 0.16 2.04 5.97 -2.91 -0.02 2.03 16 43 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 44 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 45 H 0.12 3.40 8.06 -2.91 -0.02 3.38 16 46 H 0.09 3.42 8.03 -2.91 -0.02 3.40 16 47 H 0.05 1.58 7.42 -2.39 -0.02 1.56 16 48 H 0.10 2.10 8.09 -2.38 -0.02 2.08 16 49 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 51 H 0.13 1.29 6.24 -2.39 -0.01 1.28 16 52 H 0.09 1.25 7.73 -2.38 -0.02 1.23 16 Total: -1.00 -81.52 405.80 3.96 -77.55 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: 0.27 Total: 27.98 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: 5.69 Total: -6.64 kcal Atomic # 7 Polarization: -117.66 SS G_CDS: -3.98 Total: -121.64 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.05 Total: -27.13 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.03 Total: 49.88 kcal Total: -81.52 3.96 -77.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974787185.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.765 kcal (2) G-P(sol) polarization free energy of solvation -81.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds