Wall clock time and date at job start Wed Apr 1 2020 02:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 115.55649 * 2 1 4 4 C 1.38234 * 119.99968 * 86.78957 * 3 2 1 5 5 C 1.38239 * 119.99963 * 179.76564 * 4 3 2 6 6 C 1.38237 * 119.99793 * 0.49866 * 5 4 3 7 7 C 1.38239 * 120.00147 * 359.74362 * 6 5 4 8 8 C 1.38235 * 119.99843 * 267.04727 * 3 2 1 9 9 C 1.53076 * 117.49528 * 214.29017 * 2 1 3 10 10 C 1.52997 * 59.98508 * 252.51249 * 9 2 1 11 11 H 1.09003 * 117.49647 * 107.49596 * 10 9 2 12 12 C 1.50701 * 117.49901 * 252.50093 * 10 9 2 13 13 O 1.21273 * 120.00192 * 25.61517 * 12 10 9 14 14 N 1.34777 * 119.99321 * 205.61645 * 12 10 9 15 15 C 1.46504 * 119.99158 * 179.97438 * 14 12 10 16 16 H 1.09001 * 110.64596 * 328.13403 * 15 14 12 17 17 C 1.54326 * 110.66893 * 91.41652 * 15 14 12 18 18 N 1.47023 * 107.26946 * 96.52094 * 17 15 14 19 19 C 1.36941 * 125.64716 * 178.84966 * 18 17 15 20 20 H 1.07998 * 119.99318 * 189.92989 * 19 18 17 21 21 C 1.38811 * 120.00143 * 9.93339 * 19 18 17 22 22 N 1.31613 * 119.99760 * 185.21084 * 21 19 18 23 23 Si 1.86800 * 120.00040 * 5.21412 * 21 19 18 24 24 H 1.48500 * 109.47230 * 175.00300 * 23 21 19 25 25 H 1.48502 * 109.47449 * 54.99784 * 23 21 19 26 26 H 1.48505 * 109.46983 * 294.99936 * 23 21 19 27 27 C 1.47417 * 108.70154 * 358.58177 * 18 17 15 28 28 C 1.54913 * 104.83234 * 24.36067 * 27 18 17 29 29 C 1.53000 * 111.00622 * 81.06165 * 28 27 18 30 30 C 1.52998 * 111.00484 * 204.87860 * 28 27 18 31 31 H 1.08999 * 109.47496 * 274.30970 * 1 2 3 32 32 H 1.08999 * 109.47688 * 34.31338 * 1 2 3 33 33 H 1.09008 * 109.47363 * 154.31242 * 1 2 3 34 34 H 1.07993 * 120.00218 * 359.97438 * 4 3 2 35 35 H 1.07995 * 120.00034 * 180.22480 * 5 4 3 36 36 H 1.08001 * 119.99634 * 179.73088 * 6 5 4 37 37 H 1.07994 * 120.00165 * 179.97438 * 7 6 5 38 38 H 1.07996 * 120.00444 * 0.02562 * 8 3 2 39 39 H 1.08997 * 117.51105 * 145.03372 * 9 2 1 40 40 H 1.09002 * 117.49209 * 0.02562 * 9 2 1 41 41 H 0.96991 * 120.00530 * 0.02562 * 14 12 10 42 42 H 1.09004 * 109.99268 * 337.03963 * 17 15 14 43 43 H 1.09010 * 109.77977 * 215.87576 * 17 15 14 44 44 H 0.97000 * 120.00288 * 5.24700 * 22 21 19 45 45 H 1.09008 * 110.36755 * 143.19518 * 27 18 17 46 46 H 1.08995 * 110.37114 * 265.51952 * 27 18 17 47 47 H 1.09007 * 109.47011 * 61.45290 * 29 28 27 48 48 H 1.09000 * 109.47309 * 181.45156 * 29 28 27 49 49 H 1.09001 * 109.46854 * 301.45684 * 29 28 27 50 50 H 1.08996 * 109.47296 * 58.54098 * 30 28 27 51 51 H 1.09005 * 109.47337 * 178.54900 * 30 28 27 52 52 H 1.09011 * 109.47106 * 298.54110 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1801 1.3595 0.0000 4 6 2.4178 2.0120 1.1953 5 6 3.0186 3.2570 1.1955 6 6 3.3722 3.8540 -0.0001 7 6 3.1300 3.2037 -1.1956 8 6 2.5339 1.9565 -1.1956 9 6 2.2367 -1.1219 -0.7650 10 6 2.2365 -1.1210 0.7650 11 1 1.6112 -1.8582 1.2686 12 6 3.5293 -0.7810 1.4608 13 8 4.3572 -0.0945 0.9005 14 7 3.7653 -1.2401 2.7058 15 6 5.0224 -0.9100 3.3820 16 1 5.8331 -0.8127 2.6600 17 6 4.8704 0.3803 4.2148 18 7 4.5855 -0.0247 5.5991 19 6 4.4051 0.8247 6.6581 20 1 4.3595 0.4323 7.6632 21 6 4.2807 2.1898 6.4395 22 7 4.2104 3.0161 7.4615 23 14 4.2132 2.8541 4.6949 24 1 3.9586 4.3167 4.7317 25 1 3.1194 2.1798 3.9504 26 1 5.5079 2.5939 4.0157 27 6 4.5199 -1.4962 5.6571 28 6 5.3666 -1.9787 4.4529 29 6 6.8592 -1.9578 4.7885 30 6 4.9292 -3.3726 3.9983 31 1 -0.3634 0.0772 1.0247 32 1 -0.3634 0.8488 -0.5793 33 1 -0.3634 -0.9262 -0.4455 34 1 2.1372 1.5477 2.1290 35 1 3.2075 3.7652 2.1295 36 1 3.8376 4.8286 0.0000 37 1 3.4059 3.6703 -2.1297 38 1 2.3441 1.4488 -2.1297 39 1 3.1719 -0.8765 -1.2683 40 1 1.6113 -1.8592 -1.2683 41 1 3.1033 -1.7895 3.1538 42 1 4.0466 0.9795 3.8268 43 1 5.7971 0.9534 4.1795 44 1 4.3217 2.6808 8.3649 45 1 4.9484 -1.8586 6.5916 46 1 3.4887 -1.8343 5.5555 47 1 7.0543 -2.6357 5.6196 48 1 7.4319 -2.2765 3.9176 49 1 7.1547 -0.9464 5.0676 50 1 3.8744 -3.3511 3.7245 51 1 5.5224 -3.6763 3.1357 52 1 5.0792 -4.0836 4.8109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974854422.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:09 Heat of formation + Delta-G solvation = 52.130009 kcal Electronic energy + Delta-G solvation = -32089.535340 eV Core-core repulsion = 28248.831050 eV Total energy + Delta-G solvation = -3840.704291 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.61493 -39.36928 -38.10799 -36.57258 -34.05446 -33.13763 -31.32827 -30.67679 -30.60304 -28.92519 -28.29501 -27.01612 -26.07147 -24.48094 -23.05906 -22.67243 -22.02168 -20.76869 -20.21239 -19.53009 -18.75360 -17.44899 -17.30345 -16.40269 -16.05304 -15.37107 -14.88261 -14.80100 -14.64591 -14.43429 -14.17239 -14.04929 -13.60565 -13.55981 -13.29429 -13.06149 -12.89756 -12.84324 -12.64763 -12.50673 -12.35063 -12.15071 -12.01139 -11.91641 -11.67547 -11.48719 -11.08723 -10.96792 -10.94631 -10.71455 -10.61232 -10.45251 -10.14966 -10.05627 -10.00891 -9.50327 -9.31000 -9.01180 -8.91190 -8.66964 -8.55998 -8.41584 -6.94876 -6.27962 -3.20824 1.56754 1.65925 2.60780 3.30997 3.41553 3.47335 3.67201 3.76664 3.99426 4.49318 4.59705 4.60291 4.69240 4.72491 4.90106 4.97801 5.08938 5.13063 5.14905 5.21570 5.26455 5.35640 5.47476 5.49223 5.54379 5.58621 5.59434 5.60879 5.71092 5.79075 5.80568 5.86183 5.88864 5.92174 5.99068 6.02535 6.06443 6.13674 6.22557 6.25655 6.30131 6.41403 6.45544 6.54291 6.57547 6.67306 6.74681 6.76834 6.82650 6.92215 7.23107 7.65889 7.77874 8.34335 8.50275 9.06493 9.57526 10.24583 11.23351 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010121 B = 0.005362 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.876013 B = 5220.816607 C = 6947.405726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.057 4.057 3 C -0.039 4.039 4 C -0.093 4.093 5 C -0.116 4.116 6 C -0.120 4.120 7 C -0.123 4.123 8 C -0.106 4.106 9 C -0.132 4.132 10 C -0.182 4.182 11 H 0.120 0.880 12 C 0.539 3.461 13 O -0.528 6.528 14 N -0.712 5.712 15 C 0.147 3.853 16 H 0.095 0.905 17 C 0.077 3.923 18 N -0.611 5.611 19 C -0.315 4.315 20 H 0.078 0.922 21 C -0.026 4.026 22 N -0.935 5.935 23 Si 1.077 2.923 24 H -0.304 1.304 25 H -0.289 1.289 26 H -0.289 1.289 27 C 0.147 3.853 28 C -0.090 4.090 29 C -0.127 4.127 30 C -0.130 4.130 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.398 0.602 42 H 0.054 0.946 43 H 0.053 0.947 44 H 0.260 0.740 45 H 0.046 0.954 46 H 0.020 0.980 47 H 0.056 0.944 48 H 0.050 0.950 49 H 0.066 0.934 50 H 0.052 0.948 51 H 0.054 0.946 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.870 -10.612 -17.349 20.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.058 4.058 3 C -0.039 4.039 4 C -0.111 4.111 5 C -0.134 4.134 6 C -0.138 4.138 7 C -0.141 4.141 8 C -0.124 4.124 9 C -0.170 4.170 10 C -0.203 4.203 11 H 0.138 0.862 12 C 0.325 3.675 13 O -0.405 6.405 14 N -0.363 5.363 15 C 0.042 3.958 16 H 0.113 0.887 17 C -0.048 4.048 18 N -0.338 5.338 19 C -0.443 4.443 20 H 0.096 0.904 21 C -0.224 4.224 22 N -0.577 5.577 23 Si 0.913 3.087 24 H -0.233 1.233 25 H -0.219 1.219 26 H -0.217 1.217 27 C 0.021 3.979 28 C -0.092 4.092 29 C -0.185 4.185 30 C -0.187 4.187 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.233 0.767 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.038 0.962 47 H 0.075 0.925 48 H 0.069 0.931 49 H 0.085 0.915 50 H 0.071 0.929 51 H 0.073 0.927 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.461 -8.665 -18.527 20.934 hybrid contribution -0.048 -1.757 1.459 2.284 sum -4.509 -10.422 -17.069 20.501 Atomic orbital electron populations 1.21370 0.90542 1.02335 1.02656 1.20170 0.94436 0.88118 1.03091 1.18747 0.98566 0.93225 0.93374 1.20988 0.97786 0.94867 0.97435 1.21150 0.98455 0.95671 0.98122 1.21103 1.00158 0.99954 0.92553 1.20996 0.99994 0.95418 0.97717 1.20776 0.99259 0.95388 0.96994 1.23192 1.02959 0.99704 0.91124 1.22441 0.98104 1.03787 0.95964 0.86244 1.19478 0.87161 0.79522 0.81335 1.90716 1.46830 1.37207 1.65703 1.45931 1.20632 1.53948 1.15815 1.21935 0.85909 0.94608 0.93359 0.88687 1.22719 1.00056 0.95809 0.86237 1.44717 1.84478 1.00607 1.04036 1.20185 1.48642 0.89105 0.86333 0.90387 1.25807 0.98979 0.91743 1.05909 1.70879 1.51683 1.36096 0.99060 0.83864 0.76535 0.73960 0.74323 1.23309 1.21896 1.21676 1.21623 0.95535 0.85570 0.95214 1.22056 0.97093 0.93929 0.96102 1.21614 0.93287 1.02944 1.00613 1.21661 1.00730 0.95490 1.00858 0.91635 0.91438 0.91870 0.86514 0.86632 0.86299 0.86416 0.86536 0.87488 0.87770 0.76669 0.92866 0.92954 0.92948 0.93597 0.96213 0.92468 0.93137 0.91499 0.92868 0.92700 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 9.84 37.16 0.37 -0.68 16 2 C -0.06 -0.68 2.18 -155.62 -0.34 -1.02 16 3 C -0.04 -0.57 3.61 -104.63 -0.38 -0.95 16 4 C -0.09 -1.62 7.83 -39.58 -0.31 -1.93 16 5 C -0.12 -2.04 10.00 -39.58 -0.40 -2.43 16 6 C -0.12 -1.78 10.05 -39.58 -0.40 -2.18 16 7 C -0.12 -1.64 10.05 -39.58 -0.40 -2.04 16 8 C -0.11 -1.42 9.51 -39.58 -0.38 -1.80 16 9 C -0.13 -1.37 9.19 -26.69 -0.25 -1.62 16 10 C -0.18 -2.18 5.89 -91.77 -0.54 -2.72 16 11 H 0.12 1.13 8.14 -51.93 -0.42 0.70 16 12 C 0.54 8.49 6.30 -10.98 -0.07 8.42 16 13 O -0.53 -10.09 14.10 5.56 0.08 -10.01 16 14 N -0.71 -10.97 4.42 -52.03 -0.23 -11.20 16 15 C 0.15 2.60 2.59 -66.09 -0.17 2.43 16 16 H 0.10 1.74 7.45 -51.93 -0.39 1.35 16 17 C 0.08 1.74 4.03 -3.06 -0.01 1.73 16 18 N -0.61 -14.73 3.35 -170.07 -0.57 -15.30 16 19 C -0.32 -9.05 10.63 -15.06 -0.16 -9.21 16 20 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 21 C -0.03 -0.78 5.50 -17.43 -0.10 -0.88 16 22 N -0.93 -29.91 13.70 55.49 0.76 -29.15 16 23 Si 1.08 28.26 22.71 -169.99 -3.86 24.40 16 24 H -0.30 -8.14 7.11 56.52 0.40 -7.74 16 25 H -0.29 -7.12 5.15 56.52 0.29 -6.83 16 26 H -0.29 -7.36 5.64 56.52 0.32 -7.04 16 27 C 0.15 2.81 6.13 -2.53 -0.02 2.80 16 28 C -0.09 -1.41 0.83 -152.36 -0.13 -1.53 16 29 C -0.13 -1.91 8.60 37.16 0.32 -1.59 16 30 C -0.13 -1.55 8.35 37.16 0.31 -1.24 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 33 H 0.06 0.45 7.90 -51.92 -0.41 0.04 16 34 H 0.12 2.21 7.03 -52.49 -0.37 1.84 16 35 H 0.12 2.13 6.11 -52.49 -0.32 1.80 16 36 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 39 H 0.11 1.27 7.90 -51.93 -0.41 0.86 16 40 H 0.10 0.78 8.05 -51.93 -0.42 0.36 16 41 H 0.40 5.29 7.05 -40.82 -0.29 5.01 16 42 H 0.05 1.30 3.66 -51.93 -0.19 1.11 16 43 H 0.05 1.29 6.03 -51.92 -0.31 0.98 16 44 H 0.26 8.20 8.73 -40.82 -0.36 7.85 16 45 H 0.05 0.89 8.05 -51.92 -0.42 0.47 16 46 H 0.02 0.37 8.04 -51.93 -0.42 -0.05 16 47 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.07 1.18 7.83 -51.93 -0.41 0.77 16 50 H 0.05 0.58 6.27 -51.93 -0.33 0.25 16 51 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 52 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 LS Contribution 396.54 15.07 5.98 5.98 Total: -1.00 -34.35 396.54 -9.55 -43.89 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -8.67 Total: 7.82 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -3.04 Total: -16.43 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -0.04 Total: -55.65 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.01 kcal Atomic # 14 Polarization: 28.26 SS G_CDS: -3.86 Total: 24.40 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.35 -9.55 -43.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974854422.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.022 kcal (2) G-P(sol) polarization free energy of solvation -34.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds