Wall clock time and date at job start Wed Apr 1 2020 02:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 115.55649 * 2 1 4 4 C 1.38234 * 119.99968 * 86.78957 * 3 2 1 5 5 C 1.38239 * 119.99963 * 179.76564 * 4 3 2 6 6 C 1.38237 * 119.99793 * 0.49866 * 5 4 3 7 7 C 1.38239 * 120.00147 * 359.74362 * 6 5 4 8 8 C 1.38235 * 119.99843 * 267.04727 * 3 2 1 9 9 C 1.53076 * 117.49528 * 214.29017 * 2 1 3 10 10 C 1.52997 * 59.98508 * 252.51249 * 9 2 1 11 11 H 1.09003 * 117.49647 * 107.49596 * 10 9 2 12 12 C 1.50701 * 117.49901 * 252.50093 * 10 9 2 13 13 O 1.21273 * 120.00192 * 25.61517 * 12 10 9 14 14 N 1.34777 * 119.99321 * 205.61645 * 12 10 9 15 15 C 1.46504 * 119.99158 * 179.97438 * 14 12 10 16 16 H 1.09001 * 110.64596 * 328.13403 * 15 14 12 17 17 C 1.54326 * 110.66893 * 91.41652 * 15 14 12 18 18 N 1.47023 * 107.26946 * 96.52094 * 17 15 14 19 19 C 1.36941 * 125.64716 * 178.84966 * 18 17 15 20 20 H 1.07998 * 119.99318 * 189.92989 * 19 18 17 21 21 C 1.38811 * 120.00143 * 9.93339 * 19 18 17 22 22 N 1.31613 * 119.99760 * 185.21084 * 21 19 18 23 23 Si 1.86800 * 120.00040 * 5.21412 * 21 19 18 24 24 H 1.48500 * 109.47230 * 175.00300 * 23 21 19 25 25 H 1.48502 * 109.47449 * 54.99784 * 23 21 19 26 26 H 1.48505 * 109.46983 * 294.99936 * 23 21 19 27 27 C 1.47417 * 108.70154 * 358.58177 * 18 17 15 28 28 C 1.54913 * 104.83234 * 24.36067 * 27 18 17 29 29 C 1.53000 * 111.00622 * 81.06165 * 28 27 18 30 30 C 1.52998 * 111.00484 * 204.87860 * 28 27 18 31 31 H 1.08999 * 109.47496 * 274.30970 * 1 2 3 32 32 H 1.08999 * 109.47688 * 34.31338 * 1 2 3 33 33 H 1.09008 * 109.47363 * 154.31242 * 1 2 3 34 34 H 1.07993 * 120.00218 * 359.97438 * 4 3 2 35 35 H 1.07995 * 120.00034 * 180.22480 * 5 4 3 36 36 H 1.08001 * 119.99634 * 179.73088 * 6 5 4 37 37 H 1.07994 * 120.00165 * 179.97438 * 7 6 5 38 38 H 1.07996 * 120.00444 * 0.02562 * 8 3 2 39 39 H 1.08997 * 117.51105 * 145.03372 * 9 2 1 40 40 H 1.09002 * 117.49209 * 0.02562 * 9 2 1 41 41 H 0.96991 * 120.00530 * 0.02562 * 14 12 10 42 42 H 1.09004 * 109.99268 * 337.03963 * 17 15 14 43 43 H 1.09010 * 109.77977 * 215.87576 * 17 15 14 44 44 H 0.97000 * 120.00288 * 5.24700 * 22 21 19 45 45 H 1.09008 * 110.36755 * 143.19518 * 27 18 17 46 46 H 1.08995 * 110.37114 * 265.51952 * 27 18 17 47 47 H 1.09007 * 109.47011 * 61.45290 * 29 28 27 48 48 H 1.09000 * 109.47309 * 181.45156 * 29 28 27 49 49 H 1.09001 * 109.46854 * 301.45684 * 29 28 27 50 50 H 1.08996 * 109.47296 * 58.54098 * 30 28 27 51 51 H 1.09005 * 109.47337 * 178.54900 * 30 28 27 52 52 H 1.09011 * 109.47106 * 298.54110 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1801 1.3595 0.0000 4 6 2.4178 2.0120 1.1953 5 6 3.0186 3.2570 1.1955 6 6 3.3722 3.8540 -0.0001 7 6 3.1300 3.2037 -1.1956 8 6 2.5339 1.9565 -1.1956 9 6 2.2367 -1.1219 -0.7650 10 6 2.2365 -1.1210 0.7650 11 1 1.6112 -1.8582 1.2686 12 6 3.5293 -0.7810 1.4608 13 8 4.3572 -0.0945 0.9005 14 7 3.7653 -1.2401 2.7058 15 6 5.0224 -0.9100 3.3820 16 1 5.8331 -0.8127 2.6600 17 6 4.8704 0.3803 4.2148 18 7 4.5855 -0.0247 5.5991 19 6 4.4051 0.8247 6.6581 20 1 4.3595 0.4323 7.6632 21 6 4.2807 2.1898 6.4395 22 7 4.2104 3.0161 7.4615 23 14 4.2132 2.8541 4.6949 24 1 3.9586 4.3167 4.7317 25 1 3.1194 2.1798 3.9504 26 1 5.5079 2.5939 4.0157 27 6 4.5199 -1.4962 5.6571 28 6 5.3666 -1.9787 4.4529 29 6 6.8592 -1.9578 4.7885 30 6 4.9292 -3.3726 3.9983 31 1 -0.3634 0.0772 1.0247 32 1 -0.3634 0.8488 -0.5793 33 1 -0.3634 -0.9262 -0.4455 34 1 2.1372 1.5477 2.1290 35 1 3.2075 3.7652 2.1295 36 1 3.8376 4.8286 0.0000 37 1 3.4059 3.6703 -2.1297 38 1 2.3441 1.4488 -2.1297 39 1 3.1719 -0.8765 -1.2683 40 1 1.6113 -1.8592 -1.2683 41 1 3.1033 -1.7895 3.1538 42 1 4.0466 0.9795 3.8268 43 1 5.7971 0.9534 4.1795 44 1 4.3217 2.6808 8.3649 45 1 4.9484 -1.8586 6.5916 46 1 3.4887 -1.8343 5.5555 47 1 7.0543 -2.6357 5.6196 48 1 7.4319 -2.2765 3.9176 49 1 7.1547 -0.9464 5.0676 50 1 3.8744 -3.3511 3.7245 51 1 5.5224 -3.6763 3.1357 52 1 5.0792 -4.0836 4.8109 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974854422.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:05 Heat of formation + Delta-G solvation = 30.122440 kcal Electronic energy + Delta-G solvation = -32090.489660 eV Core-core repulsion = 28248.831050 eV Total energy + Delta-G solvation = -3841.658610 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 3.98 seconds Orbital eigenvalues (eV) -41.78267 -40.68239 -39.37976 -37.64266 -35.89717 -34.52761 -33.36170 -31.82746 -31.68822 -30.24452 -29.38651 -28.15748 -27.77010 -25.82005 -24.16830 -24.04220 -23.24502 -22.63426 -21.35524 -20.69538 -20.07263 -19.42382 -18.55439 -17.59926 -17.52584 -17.01623 -16.16594 -16.03159 -15.93418 -15.74955 -15.58707 -15.22703 -15.15431 -14.98048 -14.51535 -14.38899 -14.28986 -14.08210 -13.89874 -13.72893 -13.60731 -13.26934 -13.11911 -13.07632 -13.04817 -12.79533 -12.71909 -12.17146 -12.15028 -12.03298 -11.92544 -11.85970 -11.52983 -11.38326 -11.36116 -11.15371 -11.04094 -11.00539 -10.66645 -10.02622 -9.81608 -9.57574 -9.08127 -8.68938 -5.52575 0.44356 0.48483 1.25327 1.28959 1.46947 1.51473 2.14038 2.36873 2.82548 2.87643 3.09588 3.18609 3.41419 3.54882 3.68809 3.73342 3.84729 3.92382 3.96644 4.04230 4.08605 4.21769 4.23645 4.25572 4.30545 4.40427 4.53788 4.59834 4.67214 4.69599 4.76290 4.78568 4.82825 4.86533 4.91456 4.92196 4.95789 5.00536 5.05838 5.09782 5.13738 5.17413 5.18060 5.29231 5.34718 5.42937 5.46468 5.56155 5.56365 5.60640 5.66182 6.04510 6.11738 6.59062 6.76377 7.30932 7.39430 8.03429 8.84773 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010121 B = 0.005362 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.876013 B = 5220.816607 C = 6947.405726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.068 4.068 3 C -0.041 4.041 4 C -0.117 4.117 5 C -0.150 4.150 6 C -0.131 4.131 7 C -0.118 4.118 8 C -0.107 4.107 9 C -0.107 4.107 10 C -0.191 4.191 11 H 0.151 0.849 12 C 0.533 3.467 13 O -0.567 6.567 14 N -0.706 5.706 15 C 0.159 3.841 16 H 0.091 0.909 17 C 0.077 3.923 18 N -0.626 5.626 19 C -0.293 4.293 20 H 0.058 0.942 21 C -0.080 4.080 22 N -0.972 5.972 23 Si 1.117 2.883 24 H -0.318 1.318 25 H -0.274 1.274 26 H -0.286 1.286 27 C 0.140 3.860 28 C -0.074 4.074 29 C -0.127 4.127 30 C -0.122 4.122 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.135 0.865 37 H 0.153 0.847 38 H 0.149 0.851 39 H 0.091 0.909 40 H 0.145 0.855 41 H 0.410 0.590 42 H 0.037 0.963 43 H 0.024 0.976 44 H 0.251 0.749 45 H 0.043 0.957 46 H 0.037 0.963 47 H 0.073 0.927 48 H 0.074 0.926 49 H 0.029 0.971 50 H 0.066 0.934 51 H 0.069 0.931 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.025 -14.353 -21.214 26.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.069 4.069 3 C -0.041 4.041 4 C -0.135 4.135 5 C -0.168 4.168 6 C -0.149 4.149 7 C -0.136 4.136 8 C -0.125 4.125 9 C -0.144 4.144 10 C -0.212 4.212 11 H 0.169 0.831 12 C 0.322 3.678 13 O -0.445 6.445 14 N -0.358 5.358 15 C 0.053 3.947 16 H 0.109 0.891 17 C -0.049 4.049 18 N -0.354 5.354 19 C -0.422 4.422 20 H 0.075 0.925 21 C -0.273 4.273 22 N -0.617 5.617 23 Si 0.950 3.050 24 H -0.248 1.248 25 H -0.202 1.202 26 H -0.213 1.213 27 C 0.015 3.985 28 C -0.076 4.076 29 C -0.185 4.185 30 C -0.180 4.180 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.153 0.847 37 H 0.170 0.830 38 H 0.167 0.833 39 H 0.110 0.890 40 H 0.163 0.837 41 H 0.248 0.752 42 H 0.054 0.946 43 H 0.041 0.959 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.092 0.908 48 H 0.093 0.907 49 H 0.049 0.951 50 H 0.085 0.915 51 H 0.088 0.912 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.638 -12.485 -22.401 26.258 hybrid contribution 0.366 -0.628 2.685 2.781 sum -5.272 -13.113 -19.717 24.259 Atomic orbital electron populations 1.21379 0.88458 1.04009 1.02509 1.20329 0.95783 0.86736 1.04057 1.19075 0.97813 0.94555 0.92639 1.20874 0.99684 0.95326 0.97647 1.21180 1.00643 0.96567 0.98393 1.21344 1.00342 1.00868 0.92341 1.21432 0.98552 0.95352 0.98268 1.21214 0.98109 0.95412 0.97748 1.23312 1.02430 0.99056 0.89625 1.22548 0.96463 1.04873 0.97285 0.83108 1.20214 0.88093 0.78423 0.81120 1.90696 1.48488 1.38761 1.66594 1.45856 1.20105 1.53984 1.15884 1.21644 0.87097 0.92852 0.93146 0.89092 1.22644 0.97757 0.98285 0.86193 1.44784 1.84258 1.02688 1.03669 1.20139 1.45459 0.89672 0.86957 0.92459 1.26702 1.00075 0.92781 1.07739 1.70944 1.55046 1.36786 0.98971 0.83317 0.77225 0.72726 0.71704 1.24760 1.20234 1.21349 1.21908 0.97187 0.82367 0.97027 1.22019 0.96780 0.95598 0.93184 1.21634 0.93238 1.01236 1.02343 1.21640 1.01770 0.92542 1.02020 0.92499 0.91438 0.88754 0.89281 0.89082 0.84678 0.82967 0.83340 0.89014 0.83721 0.75216 0.94627 0.95869 0.93997 0.93821 0.94527 0.90792 0.90718 0.95147 0.91496 0.91154 0.90659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 9.84 71.98 0.71 -0.89 16 2 C -0.07 -1.41 2.18 -52.90 -0.12 -1.52 16 3 C -0.04 -1.14 3.61 -19.87 -0.07 -1.22 16 4 C -0.12 -4.20 7.83 22.27 0.17 -4.03 16 5 C -0.15 -5.53 10.00 22.27 0.22 -5.31 16 6 C -0.13 -3.92 10.05 22.27 0.22 -3.69 16 7 C -0.12 -2.91 10.05 22.27 0.22 -2.68 16 8 C -0.11 -2.60 9.51 22.27 0.21 -2.38 16 9 C -0.11 -1.72 9.19 30.62 0.28 -1.44 16 10 C -0.19 -3.92 5.89 -11.54 -0.07 -3.99 16 11 H 0.15 2.11 8.14 -2.39 -0.02 2.09 16 12 C 0.53 15.89 6.30 87.66 0.55 16.44 16 13 O -0.57 -21.27 14.10 -3.01 -0.04 -21.32 16 14 N -0.71 -20.44 4.42 -436.90 -1.93 -22.37 16 15 C 0.16 5.49 2.59 46.18 0.12 5.61 16 16 H 0.09 3.27 7.45 -2.39 -0.02 3.25 16 17 C 0.08 3.55 4.03 86.73 0.35 3.90 16 18 N -0.63 -30.82 3.35 -691.97 -2.32 -33.14 16 19 C -0.29 -17.48 10.63 84.03 0.89 -16.59 16 20 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 21 C -0.08 -5.08 5.50 84.86 0.47 -4.61 16 22 N -0.97 -65.36 13.70 21.65 0.30 -65.06 16 23 Si 1.12 61.57 22.71 68.60 1.56 63.13 16 24 H -0.32 -17.93 7.11 99.48 0.71 -17.22 16 25 H -0.27 -14.20 5.15 99.48 0.51 -13.69 16 26 H -0.29 -15.37 5.64 99.48 0.56 -14.81 16 27 C 0.14 5.20 6.13 86.86 0.53 5.73 16 28 C -0.07 -2.16 0.83 -50.79 -0.04 -2.20 16 29 C -0.13 -3.60 8.60 71.98 0.62 -2.98 16 30 C -0.12 -2.37 8.35 71.98 0.60 -1.77 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 1.02 8.08 -2.39 -0.02 1.00 16 33 H 0.09 0.84 7.90 -2.38 -0.02 0.82 16 34 H 0.09 3.56 7.03 -2.91 -0.02 3.54 16 35 H 0.09 3.66 6.11 -2.91 -0.02 3.65 16 36 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 37 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 38 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 39 H 0.09 1.83 7.90 -2.39 -0.02 1.81 16 40 H 0.14 1.19 8.05 -2.39 -0.02 1.17 16 41 H 0.41 9.69 7.05 -92.71 -0.65 9.04 16 42 H 0.04 1.82 3.66 -2.38 -0.01 1.81 16 43 H 0.02 1.21 6.03 -2.38 -0.01 1.19 16 44 H 0.25 16.69 8.73 -92.71 -0.81 15.88 16 45 H 0.04 1.65 8.05 -2.38 -0.02 1.63 16 46 H 0.04 1.27 8.04 -2.39 -0.02 1.26 16 47 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 48 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 49 H 0.03 1.07 7.83 -2.39 -0.02 1.05 16 50 H 0.07 1.14 6.27 -2.39 -0.01 1.12 16 51 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 52 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -82.02 396.54 3.33 -78.69 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: -0.12 Total: 23.70 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: 5.88 Total: -23.63 kcal Atomic # 7 Polarization: -116.62 SS G_CDS: -3.95 Total: -120.57 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.04 Total: -21.32 kcal Atomic # 14 Polarization: 61.57 SS G_CDS: 1.56 Total: 63.13 kcal Total: -82.02 3.33 -78.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974854422.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.816 kcal (2) G-P(sol) polarization free energy of solvation -82.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.98 seconds