Wall clock time and date at job start Wed Apr 1 2020 02:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 110.88878 * 2 1 4 4 C 1.55129 * 111.18921 * 236.06458 * 2 1 3 5 5 N 1.47421 * 104.72458 * 279.19182 * 4 2 1 6 6 C 1.36945 * 125.64870 * 155.81551 * 5 4 2 7 7 H 1.08000 * 119.99441 * 359.72084 * 6 5 4 8 8 C 1.38811 * 120.00031 * 179.71941 * 6 5 4 9 9 N 1.31619 * 120.00283 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99811 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47177 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46857 * 120.00139 * 10 8 6 13 13 H 1.48492 * 109.47220 * 239.99987 * 10 8 6 14 14 C 1.47018 * 108.70379 * 335.55582 * 5 4 2 15 15 C 1.54320 * 107.27210 * 1.28563 * 14 5 4 16 16 H 1.08997 * 110.72011 * 140.73537 * 15 14 5 17 17 N 1.46497 * 110.71903 * 263.83160 * 15 14 5 18 18 C 1.34777 * 119.99762 * 273.54291 * 17 15 14 19 19 O 1.21278 * 120.00343 * 0.02562 * 18 17 15 20 20 C 1.50705 * 120.00011 * 179.97438 * 18 17 15 21 21 H 1.08996 * 109.67722 * 299.49393 * 20 18 17 22 22 C 1.53317 * 109.67744 * 178.94551 * 20 18 17 23 23 C 1.52740 * 108.38117 * 170.41495 * 22 20 18 24 24 C 1.50638 * 110.57081 * 51.15675 * 23 22 20 25 25 C 1.38916 * 117.74640 * 162.48708 * 24 23 22 26 26 C 1.37929 * 120.54401 * 179.45613 * 25 24 23 27 27 C 1.38264 * 119.77138 * 359.97438 * 26 25 24 28 28 C 1.37933 * 119.77266 * 0.13205 * 27 26 25 29 29 C 1.37660 * 122.56537 * 342.14528 * 24 23 22 30 30 C 1.50632 * 122.56650 * 0.75280 * 29 24 23 31 31 H 1.09002 * 109.46863 * 296.12194 * 1 2 3 32 32 H 1.09004 * 109.46859 * 56.11887 * 1 2 3 33 33 H 1.08989 * 109.47342 * 176.11932 * 1 2 3 34 34 H 1.08998 * 109.46748 * 183.88306 * 3 2 1 35 35 H 1.09000 * 109.47082 * 303.87771 * 3 2 1 36 36 H 1.08995 * 109.47036 * 63.88408 * 3 2 1 37 37 H 1.08996 * 110.49705 * 160.35397 * 4 2 1 38 38 H 1.08997 * 110.34301 * 37.96002 * 4 2 1 39 39 H 0.96998 * 120.00243 * 179.97438 * 9 8 6 40 40 H 1.09010 * 109.88204 * 120.70275 * 14 5 4 41 41 H 1.09004 * 109.88434 * 241.70985 * 14 5 4 42 42 H 0.96994 * 120.00548 * 93.54768 * 17 15 14 43 43 H 1.08997 * 109.68670 * 290.13488 * 22 20 18 44 44 H 1.09001 * 109.68694 * 50.69843 * 22 20 18 45 45 H 1.08996 * 109.25832 * 290.87301 * 23 22 20 46 46 H 1.08999 * 109.25352 * 171.43450 * 23 22 20 47 47 H 1.08005 * 119.72253 * 359.43131 * 25 24 23 48 48 H 1.08002 * 120.11572 * 180.02562 * 26 25 24 49 49 H 1.08001 * 120.11717 * 180.14589 * 27 26 25 50 50 H 1.07997 * 119.72859 * 179.97438 * 28 27 26 51 51 H 1.08997 * 109.25033 * 221.97458 * 30 29 24 52 52 H 1.09005 * 109.21645 * 102.53365 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0756 1.4294 0.0000 4 6 2.0908 -0.8075 -1.2000 5 7 2.0138 -2.2162 -0.7725 6 6 1.9459 -3.3007 -1.6059 7 1 1.9413 -3.1593 -2.6766 8 6 1.8829 -4.5815 -1.0746 9 7 1.8880 -4.7538 0.2303 10 14 1.7895 -6.0608 -2.2115 11 1 1.7983 -5.6011 -3.6236 12 1 2.9589 -6.9440 -1.9717 13 1 0.5377 -6.8131 -1.9431 14 6 2.0285 -2.2644 0.6969 15 6 2.0861 -0.8075 1.2025 16 1 1.4548 -0.6792 2.0817 17 7 3.4667 -0.4152 1.4963 18 6 3.9980 -0.6755 2.7073 19 8 3.3335 -1.2349 3.5536 20 6 5.4184 -0.2724 3.0093 21 1 6.0970 -0.7754 2.3206 22 6 5.7680 -0.6555 4.4521 23 6 7.2692 -0.4578 4.6526 24 6 7.6868 0.9177 4.2020 25 6 8.9122 1.3991 4.6451 26 6 9.3564 2.6465 4.2588 27 6 8.5765 3.4247 3.4235 28 6 7.3584 2.9494 2.9843 29 6 6.9080 1.6944 3.3743 30 6 5.5657 1.2408 2.8630 31 1 -0.3633 0.4525 0.9227 32 1 -0.3633 0.5729 -0.8532 33 1 -0.3633 -1.0252 -0.0695 34 1 3.1630 1.4032 -0.0696 35 1 1.6699 1.9731 -0.8532 36 1 1.7825 1.9301 0.9227 37 1 3.1252 -0.5273 -1.3986 38 1 1.4764 -0.6457 -2.0857 39 1 1.8436 -5.6488 0.6016 40 1 1.1217 -2.7476 1.0610 41 1 2.9048 -2.8137 1.0411 42 1 3.9983 0.0320 0.8194 43 1 5.2181 -0.0184 5.1448 44 1 5.5087 -1.6995 4.6279 45 1 7.8109 -1.2056 4.0735 46 1 7.5097 -0.5784 5.7089 47 1 9.5219 0.7918 5.2976 48 1 10.3105 3.0138 4.6071 49 1 8.9199 4.4013 3.1156 50 1 6.7496 3.5580 2.3321 51 1 5.4716 1.5111 1.8113 52 1 4.7789 1.7352 3.4329 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000975091646.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:10 Heat of formation + Delta-G solvation = -4.669950 kcal Electronic energy + Delta-G solvation = -30761.194456 eV Core-core repulsion = 26918.027135 eV Total energy + Delta-G solvation = -3843.167322 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.53420 -39.48528 -38.00401 -35.70561 -33.87997 -33.12208 -32.55247 -30.70158 -30.49263 -29.14689 -27.90711 -26.77316 -25.61828 -24.47936 -23.56153 -22.77423 -22.30755 -20.67349 -19.89023 -19.33851 -18.60615 -16.97169 -16.68526 -16.52399 -15.84849 -15.67923 -15.05146 -14.72226 -14.51456 -14.22049 -13.97621 -13.96064 -13.79114 -13.68936 -13.36862 -13.19078 -13.01117 -12.62796 -12.51927 -12.16403 -12.00862 -11.96424 -11.66538 -11.60826 -11.56797 -11.36058 -11.05890 -11.05169 -10.97579 -10.87399 -10.77980 -10.49056 -10.35975 -10.21068 -9.96997 -9.84686 -9.63095 -9.30769 -8.92349 -8.70369 -8.61009 -8.38726 -6.80296 -5.66942 -3.01851 1.19691 1.20675 3.05598 3.41091 3.46225 3.49173 3.56787 3.59351 4.43435 4.51132 4.53171 4.77299 4.80518 4.84439 4.93910 4.96963 5.01791 5.17488 5.27822 5.29112 5.32333 5.37565 5.40902 5.54185 5.55435 5.63543 5.65821 5.73607 5.80420 5.81704 5.86236 5.92210 5.95272 6.03762 6.13033 6.17171 6.21422 6.25433 6.28649 6.33579 6.35594 6.41159 6.52020 6.59811 6.62501 6.69180 6.79160 6.85269 6.98646 7.58440 7.68307 7.85996 8.00212 8.28321 8.69031 9.24339 9.85083 10.50548 11.43480 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013934 B = 0.002872 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.048057 B = 9745.605400 C =10641.965340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 C -0.130 4.130 4 C 0.144 3.856 5 N -0.603 5.603 6 C -0.229 4.229 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.917 5.917 10 Si 0.910 3.090 11 H -0.281 1.281 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.176 3.824 15 C 0.125 3.875 16 H 0.085 0.915 17 N -0.710 5.710 18 C 0.517 3.483 19 O -0.538 6.538 20 C -0.107 4.107 21 H 0.099 0.901 22 C -0.098 4.098 23 C -0.083 4.083 24 C -0.072 4.072 25 C -0.121 4.121 26 C -0.124 4.124 27 C -0.125 4.125 28 C -0.119 4.119 29 C -0.072 4.072 30 C -0.070 4.070 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.015 0.985 38 H 0.040 0.960 39 H 0.252 0.748 40 H 0.052 0.948 41 H 0.048 0.952 42 H 0.394 0.606 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.121 0.879 51 H 0.079 0.921 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.075 17.483 6.903 21.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C -0.188 4.188 4 C 0.018 3.982 5 N -0.329 5.329 6 C -0.357 4.357 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.564 5.564 10 Si 0.740 3.260 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.218 1.218 14 C 0.050 3.950 15 C 0.020 3.980 16 H 0.103 0.897 17 N -0.361 5.361 18 C 0.302 3.698 19 O -0.415 6.415 20 C -0.128 4.128 21 H 0.117 0.883 22 C -0.136 4.136 23 C -0.120 4.120 24 C -0.073 4.073 25 C -0.139 4.139 26 C -0.142 4.142 27 C -0.143 4.143 28 C -0.137 4.137 29 C -0.072 4.072 30 C -0.107 4.107 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.032 0.968 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.229 0.771 43 H 0.089 0.911 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.139 0.861 51 H 0.097 0.903 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.561 16.825 7.524 21.242 hybrid contribution 0.386 -0.623 -0.993 1.234 sum 10.947 16.202 6.531 20.615 Atomic orbital electron populations 1.21591 0.93339 1.02941 1.00461 1.22037 0.96305 0.94055 0.96668 1.21676 1.00155 0.95671 1.01334 1.21663 0.96444 0.85826 0.94309 1.44451 1.86854 0.99721 1.01882 1.19059 1.43765 0.83989 0.88903 0.90489 1.24812 1.02286 0.97369 0.95942 1.69980 1.56696 1.20672 1.09097 0.86081 0.77241 0.83074 0.79567 1.20587 1.21851 1.21791 1.21511 1.01591 0.88635 0.83250 1.22445 0.81247 0.97511 0.96817 0.89666 1.46044 1.15027 1.60686 1.14310 1.20348 0.88421 0.78842 0.82146 1.90697 1.62229 1.41690 1.46872 1.21326 0.94943 0.96682 0.99865 0.88318 1.21352 0.94423 1.03362 0.94442 1.20553 0.96699 0.93192 1.01552 1.19710 0.94263 0.96301 0.96977 1.21165 0.95927 0.96239 1.00603 1.21049 0.99797 0.94793 0.98601 1.21040 0.94956 0.99845 0.98477 1.21156 0.96529 0.95529 1.00440 1.19562 0.95966 0.94272 0.97396 1.20427 0.94444 0.94224 1.01620 0.93365 0.92931 0.91198 0.93119 0.92677 0.92852 0.96758 0.94164 0.93776 0.92972 0.93406 0.77131 0.91132 0.89972 0.90328 0.90430 0.86231 0.86301 0.86245 0.86113 0.90257 0.90009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.59 37.16 0.32 -1.67 16 2 C -0.09 -1.45 0.83 -152.24 -0.13 -1.58 16 3 C -0.13 -1.62 8.22 37.16 0.31 -1.32 16 4 C 0.14 2.82 6.15 -2.41 -0.01 2.81 16 5 N -0.60 -14.98 3.38 -169.94 -0.57 -15.55 16 6 C -0.23 -6.32 10.28 -15.06 -0.15 -6.47 16 7 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 8 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 9 N -0.92 -27.44 10.31 55.49 0.57 -26.86 16 10 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 C 0.18 4.31 4.79 -3.07 -0.01 4.30 16 15 C 0.12 2.35 2.51 -66.10 -0.17 2.18 16 16 H 0.09 1.68 7.60 -51.93 -0.39 1.29 16 17 N -0.71 -11.47 4.47 -52.03 -0.23 -11.70 16 18 C 0.52 8.61 7.14 -10.98 -0.08 8.54 16 19 O -0.54 -11.17 15.57 5.56 0.09 -11.09 16 20 C -0.11 -1.35 2.55 -91.74 -0.23 -1.58 16 21 H 0.10 1.22 8.10 -51.93 -0.42 0.80 16 22 C -0.10 -1.20 4.72 -26.70 -0.13 -1.32 16 23 C -0.08 -0.83 5.67 -28.05 -0.16 -0.99 16 24 C -0.07 -0.76 5.74 -104.61 -0.60 -1.36 16 25 C -0.12 -1.13 9.61 -39.44 -0.38 -1.51 16 26 C -0.12 -1.08 10.05 -39.69 -0.40 -1.48 16 27 C -0.13 -1.09 10.05 -39.68 -0.40 -1.49 16 28 C -0.12 -1.12 9.61 -39.44 -0.38 -1.50 16 29 C -0.07 -0.75 5.74 -104.61 -0.60 -1.35 16 30 C -0.07 -0.73 4.83 -28.05 -0.14 -0.86 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.32 7.91 -51.94 -0.41 0.91 16 34 H 0.05 0.57 6.38 -51.93 -0.33 0.24 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.01 0.28 7.99 -51.93 -0.41 -0.13 16 38 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 39 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.05 1.46 7.38 -51.92 -0.38 1.07 16 41 H 0.05 1.35 7.40 -51.93 -0.38 0.97 16 42 H 0.39 5.48 6.52 -40.82 -0.27 5.21 16 43 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 44 H 0.08 1.13 7.80 -51.93 -0.41 0.72 16 45 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.08 0.67 8.13 -51.93 -0.42 0.25 16 47 H 0.12 0.90 8.05 -52.48 -0.42 0.48 16 48 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 49 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 50 H 0.12 0.93 8.05 -52.49 -0.42 0.51 16 51 H 0.08 0.72 7.81 -51.93 -0.41 0.31 16 52 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 LS Contribution 403.51 15.07 6.08 6.08 Total: -1.00 -32.68 403.51 -11.38 -44.05 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -8.85 Total: 4.78 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -3.44 Total: -6.98 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -0.23 Total: -54.12 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.68 -11.38 -44.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975091646.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.384 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds