Wall clock time and date at job start Wed Apr 1 2020 02:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 110.91439 * 2 1 4 4 C 1.54908 * 111.00481 * 123.90045 * 2 1 3 5 5 N 1.47425 * 104.92961 * 81.01010 * 4 2 1 6 6 C 1.36938 * 125.65179 * 204.15650 * 5 4 2 7 7 H 1.08005 * 119.99558 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00146 * 180.02562 * 6 5 4 9 9 N 1.31620 * 120.00086 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99779 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47268 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47204 * 119.99715 * 10 8 6 13 13 H 1.48508 * 109.46889 * 239.99519 * 10 8 6 14 14 C 1.47290 * 108.55742 * 24.15407 * 5 4 2 15 15 C 1.54325 * 107.30599 * 358.92448 * 14 5 4 16 16 H 1.09002 * 110.72180 * 219.45147 * 15 14 5 17 17 N 1.46496 * 110.87283 * 96.25220 * 15 14 5 18 18 C 1.34782 * 120.00326 * 91.38814 * 17 15 14 19 19 O 1.21281 * 119.99454 * 359.97438 * 18 17 15 20 20 C 1.50695 * 120.00475 * 180.02562 * 18 17 15 21 21 H 1.08999 * 109.67919 * 59.47640 * 20 18 17 22 22 C 1.53323 * 109.68346 * 180.02562 * 20 18 17 23 23 C 1.52738 * 108.39667 * 189.58571 * 22 20 18 24 24 C 1.50633 * 110.59328 * 308.94686 * 23 22 20 25 25 C 1.38918 * 117.74932 * 197.67340 * 24 23 22 26 26 C 1.37932 * 120.54360 * 180.25447 * 25 24 23 27 27 C 1.38266 * 119.77524 * 0.02798 * 26 25 24 28 28 C 1.37936 * 119.76862 * 359.87254 * 27 26 25 29 29 C 1.37652 * 122.56937 * 17.71838 * 24 23 22 30 30 C 1.50631 * 122.56679 * 359.28371 * 29 24 23 31 31 H 1.09001 * 109.46742 * 297.54757 * 1 2 3 32 32 H 1.08996 * 109.47279 * 57.55485 * 1 2 3 33 33 H 1.09002 * 109.47053 * 177.55228 * 1 2 3 34 34 H 1.09001 * 109.47276 * 182.45167 * 3 2 1 35 35 H 1.09003 * 109.46690 * 302.44706 * 3 2 1 36 36 H 1.08998 * 109.47248 * 62.44868 * 3 2 1 37 37 H 1.09002 * 110.36632 * 199.90406 * 4 2 1 38 38 H 1.08995 * 110.36781 * 322.11643 * 4 2 1 39 39 H 0.96999 * 120.00175 * 180.02562 * 9 8 6 40 40 H 1.09004 * 109.85762 * 239.50064 * 14 5 4 41 41 H 1.08995 * 110.00297 * 118.43011 * 14 5 4 42 42 H 0.97000 * 119.99859 * 271.39321 * 17 15 14 43 43 H 1.09001 * 109.67810 * 309.30573 * 22 20 18 44 44 H 1.08993 * 109.68308 * 69.85414 * 22 20 18 45 45 H 1.08996 * 109.25009 * 69.23185 * 23 22 20 46 46 H 1.08992 * 109.25261 * 188.65757 * 23 22 20 47 47 H 1.08001 * 119.72963 * 0.24053 * 25 24 23 48 48 H 1.08004 * 120.11396 * 180.02562 * 26 25 24 49 49 H 1.07999 * 120.11848 * 179.89218 * 27 26 25 50 50 H 1.08002 * 119.73261 * 180.02562 * 28 27 26 51 51 H 1.09009 * 109.24525 * 257.55005 * 30 29 24 52 52 H 1.08991 * 109.26552 * 138.11411 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0853 -0.8066 1.2003 5 7 2.0137 -2.2167 0.7761 6 6 1.9448 -3.2991 1.6120 7 1 1.9403 -3.1553 2.6824 8 6 1.8819 -4.5812 1.0836 9 7 1.8879 -4.7564 -0.2208 10 14 1.7872 -6.0577 2.2240 11 1 1.7950 -5.5947 3.6349 12 1 0.5353 -6.8103 1.9564 13 1 2.9566 -6.9419 1.9870 14 6 2.0286 -2.2647 -0.6960 15 6 2.0862 -0.8079 -1.2022 16 1 1.4524 -0.6792 -2.0796 17 7 3.4652 -0.4126 -1.4989 18 6 3.9625 -0.5812 -2.7402 19 8 3.2683 -1.0608 -3.6115 20 6 5.3812 -0.1751 -3.0453 21 1 6.0674 -0.7287 -2.4044 22 6 5.6974 -0.4686 -4.5166 23 6 7.1965 -0.2748 -4.7354 24 6 7.6409 1.0630 -4.2046 25 6 8.8615 1.5601 -4.6437 26 6 9.3267 2.7770 -4.1906 27 6 8.5729 3.5087 -3.2916 28 6 7.3597 3.0178 -2.8560 29 6 6.8882 1.7937 -3.3133 30 6 5.5498 1.3241 -2.8063 31 1 -0.3633 0.4753 0.9112 32 1 -0.3633 0.5513 -0.8672 33 1 -0.3633 -1.0267 -0.0439 34 1 3.1650 1.4021 -0.0440 35 1 1.6908 1.9653 -0.8673 36 1 1.7619 1.9383 0.9111 37 1 3.1183 -0.5233 1.4024 38 1 1.4684 -0.6446 2.0842 39 1 1.8436 -5.6523 -0.5901 40 1 1.1219 -2.7480 -1.0599 41 1 2.9050 -2.8123 -1.0423 42 1 4.0205 -0.0295 -0.8019 43 1 5.4218 -1.4963 -4.7533 44 1 5.1415 0.2175 -5.1555 45 1 7.7403 -1.0653 -4.2182 46 1 7.4139 -0.3284 -5.8021 47 1 9.4513 0.9889 -5.3454 48 1 10.2765 3.1571 -4.5369 49 1 8.9326 4.4614 -2.9319 50 1 6.7712 3.5900 -2.1541 51 1 4.7587 1.8625 -3.3284 52 1 5.4782 1.5281 -1.7380 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000975091648.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:14 Heat of formation + Delta-G solvation = -4.729661 kcal Electronic energy + Delta-G solvation = -30740.593327 eV Core-core repulsion = 26897.423416 eV Total energy + Delta-G solvation = -3843.169911 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.54249 -39.49058 -38.01457 -35.71584 -33.87528 -33.12627 -32.56423 -30.70000 -30.50001 -29.15376 -27.92115 -26.77161 -25.62223 -24.48465 -23.56064 -22.77897 -22.31180 -20.66388 -19.93552 -19.34674 -18.60365 -16.98571 -16.69140 -16.53933 -15.84970 -15.69611 -15.05842 -14.71105 -14.51642 -14.21801 -13.99683 -13.96652 -13.79648 -13.68355 -13.38028 -13.20143 -13.01564 -12.61491 -12.50721 -12.17029 -12.01817 -11.98010 -11.66399 -11.61527 -11.57521 -11.35911 -11.07243 -11.05374 -10.98121 -10.87967 -10.78371 -10.50036 -10.35658 -10.20892 -9.99383 -9.85355 -9.62739 -9.33019 -8.92609 -8.70759 -8.62348 -8.39363 -6.81076 -5.67991 -3.02553 1.19405 1.20356 3.03109 3.40693 3.45901 3.48781 3.55966 3.58488 4.42847 4.50543 4.52595 4.76950 4.79626 4.84005 4.94352 4.97498 5.01073 5.16810 5.27999 5.29246 5.32326 5.36882 5.40300 5.53483 5.54804 5.63065 5.65256 5.72983 5.79641 5.83183 5.85782 5.92042 5.94575 6.04047 6.12037 6.17050 6.22620 6.24920 6.27729 6.33339 6.35021 6.41572 6.51579 6.59601 6.62258 6.68868 6.78183 6.84950 6.98120 7.57369 7.65971 7.84240 7.98461 8.26730 8.66864 9.23080 9.84048 10.49901 11.42824 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014005 B = 0.002842 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.771427 B = 9851.368293 C =10664.777673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.090 4.090 3 C -0.130 4.130 4 C 0.144 3.856 5 N -0.603 5.603 6 C -0.228 4.228 7 H 0.077 0.923 8 C -0.008 4.008 9 N -0.918 5.918 10 Si 0.910 3.090 11 H -0.281 1.281 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.175 3.825 15 C 0.124 3.876 16 H 0.088 0.912 17 N -0.709 5.709 18 C 0.517 3.483 19 O -0.540 6.540 20 C -0.107 4.107 21 H 0.099 0.901 22 C -0.098 4.098 23 C -0.083 4.083 24 C -0.073 4.073 25 C -0.121 4.121 26 C -0.124 4.124 27 C -0.125 4.125 28 C -0.118 4.118 29 C -0.072 4.072 30 C -0.070 4.070 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.014 0.986 38 H 0.040 0.960 39 H 0.252 0.748 40 H 0.053 0.947 41 H 0.048 0.952 42 H 0.395 0.605 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.121 0.879 51 H 0.082 0.918 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.110 17.500 -6.845 21.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C -0.188 4.188 4 C 0.017 3.983 5 N -0.329 5.329 6 C -0.356 4.356 7 H 0.095 0.905 8 C -0.204 4.204 9 N -0.565 5.565 10 Si 0.741 3.259 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.219 1.219 14 C 0.049 3.951 15 C 0.019 3.981 16 H 0.106 0.894 17 N -0.359 5.359 18 C 0.303 3.697 19 O -0.417 6.417 20 C -0.128 4.128 21 H 0.117 0.883 22 C -0.136 4.136 23 C -0.120 4.120 24 C -0.073 4.073 25 C -0.139 4.139 26 C -0.142 4.142 27 C -0.143 4.143 28 C -0.136 4.136 29 C -0.072 4.072 30 C -0.107 4.107 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.032 0.968 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.229 0.771 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.139 0.861 51 H 0.100 0.900 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.578 16.900 -7.482 21.295 hybrid contribution 0.390 -0.663 1.013 1.272 sum 10.967 16.237 -6.469 20.634 Atomic orbital electron populations 1.21592 0.93384 1.02814 1.00508 1.22009 0.96292 0.94120 0.96698 1.21671 1.00227 0.95616 1.01265 1.21619 0.96501 0.85831 0.94317 1.44498 1.86896 0.99680 1.01823 1.19059 1.43703 0.84000 0.88865 0.90469 1.24808 1.02305 0.97361 0.95952 1.69972 1.56757 1.20599 1.09197 0.86079 0.77242 0.83039 0.79584 1.20585 1.21791 1.21850 1.21555 1.01563 0.88660 0.83291 1.22443 0.81347 0.97351 0.96994 0.89387 1.46035 1.14887 1.63858 1.11149 1.20359 0.88629 0.78272 0.82458 1.90691 1.60438 1.44184 1.46392 1.21328 0.94955 0.96947 0.99598 0.88308 1.21351 0.94539 1.03567 0.94107 1.20548 0.96582 0.93745 1.01116 1.19703 0.94399 0.96509 0.96648 1.21165 0.95887 0.96330 1.00553 1.21052 0.99844 0.95227 0.98115 1.21042 0.95116 0.99941 0.98209 1.21160 0.96461 0.95651 1.00373 1.19557 0.96012 0.94633 0.96990 1.20426 0.94480 0.94285 1.01517 0.92879 0.93427 0.91297 0.93074 0.92909 0.92735 0.96805 0.94186 0.93779 0.92926 0.93434 0.77051 0.90017 0.91112 0.90334 0.90427 0.86232 0.86299 0.86240 0.86105 0.89998 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 8.61 37.16 0.32 -1.67 16 2 C -0.09 -1.46 0.83 -152.36 -0.13 -1.59 16 3 C -0.13 -1.63 8.35 37.16 0.31 -1.32 16 4 C 0.14 2.81 6.12 -2.53 -0.02 2.79 16 5 N -0.60 -14.92 3.39 -169.86 -0.58 -15.49 16 6 C -0.23 -6.27 10.28 -15.06 -0.15 -6.43 16 7 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 8 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 9 N -0.92 -27.34 10.33 55.49 0.57 -26.76 16 10 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 C 0.17 4.26 4.75 -2.92 -0.01 4.25 16 15 C 0.12 2.32 2.59 -66.10 -0.17 2.15 16 16 H 0.09 1.74 7.45 -51.93 -0.39 1.36 16 17 N -0.71 -11.42 4.34 -52.03 -0.23 -11.64 16 18 C 0.52 8.52 7.13 -10.99 -0.08 8.44 16 19 O -0.54 -11.05 15.50 5.56 0.09 -10.97 16 20 C -0.11 -1.34 2.55 -91.74 -0.23 -1.57 16 21 H 0.10 1.21 8.10 -51.93 -0.42 0.79 16 22 C -0.10 -1.18 4.71 -26.70 -0.13 -1.31 16 23 C -0.08 -0.82 5.67 -28.05 -0.16 -0.98 16 24 C -0.07 -0.75 5.74 -104.62 -0.60 -1.35 16 25 C -0.12 -1.13 9.61 -39.44 -0.38 -1.51 16 26 C -0.12 -1.08 10.05 -39.68 -0.40 -1.47 16 27 C -0.13 -1.09 10.05 -39.68 -0.40 -1.49 16 28 C -0.12 -1.11 9.61 -39.44 -0.38 -1.49 16 29 C -0.07 -0.75 5.74 -104.62 -0.60 -1.35 16 30 C -0.07 -0.72 4.85 -28.05 -0.14 -0.86 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 1.30 7.81 -51.93 -0.41 0.89 16 34 H 0.05 0.59 6.26 -51.93 -0.33 0.26 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.01 0.27 8.04 -51.93 -0.42 -0.15 16 38 H 0.04 0.78 8.05 -51.93 -0.42 0.36 16 39 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.05 1.46 7.39 -51.93 -0.38 1.08 16 41 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 42 H 0.39 5.53 6.73 -40.82 -0.27 5.25 16 43 H 0.08 1.10 7.82 -51.93 -0.41 0.70 16 44 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 47 H 0.12 0.90 8.05 -52.49 -0.42 0.47 16 48 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 49 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 50 H 0.12 0.93 8.05 -52.49 -0.42 0.51 16 51 H 0.08 0.87 8.11 -51.92 -0.42 0.45 16 52 H 0.08 0.72 7.87 -51.93 -0.41 0.31 16 LS Contribution 403.50 15.07 6.08 6.08 Total: -1.00 -32.47 403.50 -11.37 -43.84 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -8.85 Total: 4.80 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -3.44 Total: -7.07 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.23 Total: -53.90 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.47 -11.37 -43.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975091648.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.109 kcal (2) G-P(sol) polarization free energy of solvation -32.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds