Wall clock time and date at job start Wed Apr 1 2020 02:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 110.91389 * 2 1 4 4 C 1.55381 * 111.19048 * 235.94082 * 2 1 3 5 5 N 1.47429 * 104.87380 * 204.98226 * 4 2 1 6 6 C 1.36945 * 125.64636 * 204.16893 * 5 4 2 7 7 H 1.08001 * 119.99902 * 354.83836 * 6 5 4 8 8 C 1.38805 * 119.99934 * 174.83534 * 6 5 4 9 9 N 1.31628 * 119.99844 * 7.06218 * 8 6 5 10 10 Si 1.86793 * 120.00387 * 187.06374 * 8 6 5 11 11 H 1.48499 * 109.47302 * 94.98517 * 10 8 6 12 12 H 1.48496 * 109.47658 * 214.98697 * 10 8 6 13 13 H 1.48507 * 109.46738 * 334.98847 * 10 8 6 14 14 C 1.47015 * 108.70428 * 24.13144 * 5 4 2 15 15 C 1.54327 * 107.27030 * 358.94313 * 14 5 4 16 16 H 1.09005 * 110.71974 * 219.27066 * 15 14 5 17 17 N 1.46500 * 110.72272 * 96.17197 * 15 14 5 18 18 C 1.34772 * 119.99827 * 88.83787 * 17 15 14 19 19 O 1.21279 * 120.00765 * 0.02562 * 18 17 15 20 20 C 1.50704 * 119.99732 * 180.02562 * 18 17 15 21 21 H 1.09008 * 109.68058 * 299.47853 * 20 18 17 22 22 C 1.53324 * 109.71583 * 178.93573 * 20 18 17 23 23 C 1.52743 * 108.37657 * 170.33755 * 22 20 18 24 24 C 1.50626 * 110.58951 * 51.05512 * 23 22 20 25 25 C 1.38912 * 117.75125 * 162.53284 * 24 23 22 26 26 C 1.37935 * 120.54549 * 179.80582 * 25 24 23 27 27 C 1.38269 * 119.77460 * 359.96030 * 26 25 24 28 28 C 1.37931 * 119.76602 * 0.10071 * 27 26 25 29 29 C 1.37670 * 122.56909 * 342.46882 * 24 23 22 30 30 C 1.50638 * 122.56908 * 0.37106 * 29 24 23 31 31 H 1.08995 * 109.47339 * 296.10038 * 1 2 3 32 32 H 1.08999 * 109.46887 * 56.10297 * 1 2 3 33 33 H 1.08998 * 109.46962 * 176.09409 * 1 2 3 34 34 H 1.09001 * 109.46690 * 183.89920 * 3 2 1 35 35 H 1.08995 * 109.47489 * 303.90008 * 3 2 1 36 36 H 1.09001 * 109.47106 * 63.90055 * 3 2 1 37 37 H 1.09001 * 110.34641 * 86.12888 * 4 2 1 38 38 H 1.09004 * 110.44421 * 323.88244 * 4 2 1 39 39 H 0.97002 * 119.99624 * 180.02562 * 9 8 6 40 40 H 1.08998 * 109.88332 * 239.52905 * 14 5 4 41 41 H 1.08994 * 109.88379 * 118.35811 * 14 5 4 42 42 H 0.97005 * 119.99729 * 268.84688 * 17 15 14 43 43 H 1.08999 * 109.68863 * 290.05781 * 22 20 18 44 44 H 1.09001 * 109.68352 * 50.58072 * 22 20 18 45 45 H 1.09000 * 109.25453 * 171.34609 * 23 22 20 46 46 H 1.09007 * 109.24703 * 290.81087 * 23 22 20 47 47 H 1.07991 * 119.72709 * 359.78575 * 25 24 23 48 48 H 1.07995 * 120.11125 * 179.97438 * 26 25 24 49 49 H 1.07993 * 120.11556 * 180.12194 * 27 26 25 50 50 H 1.08003 * 119.72477 * 180.02562 * 28 27 26 51 51 H 1.08997 * 109.25203 * 222.15916 * 30 29 24 52 52 H 1.08997 * 109.24978 * 102.73283 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0917 -0.8114 -1.2002 5 7 3.4327 -1.2461 -0.7687 6 6 4.4726 -1.5693 -1.5992 7 1 4.3214 -1.5966 -2.6683 8 6 5.7207 -1.8618 -1.0670 9 7 5.8726 -1.9652 0.2364 10 14 7.1849 -2.1088 -2.2003 11 1 7.9317 -0.8318 -2.3296 12 1 8.0793 -3.1501 -1.6340 13 1 6.7075 -2.5407 -3.5386 14 6 3.4691 -1.2742 0.7007 15 6 2.0861 -0.8079 1.2022 16 1 2.1892 -0.1706 2.0805 17 7 1.2268 -1.9574 1.4962 18 6 1.2427 -2.5143 2.7234 19 8 1.9681 -2.0636 3.5846 20 6 0.3591 -3.6971 3.0257 21 1 -0.6858 -3.4198 2.8863 22 6 0.5836 -4.1543 4.4719 23 6 -0.4867 -5.1860 4.8224 24 6 -0.5438 -6.2669 3.7748 25 6 -1.1793 -7.4566 4.1069 26 6 -1.2684 -8.4834 3.1902 27 6 -0.7217 -8.3279 1.9298 28 6 -0.0891 -7.1478 1.5986 29 6 0.0037 -6.1134 2.5210 30 6 0.7128 -4.8547 2.0944 31 1 -0.3634 0.4521 0.9228 32 1 -0.3633 0.5731 -0.8530 33 1 -0.3633 -1.0253 -0.0700 34 1 3.1637 1.4025 -0.0699 35 1 1.6705 1.9732 -0.8529 36 1 1.7836 1.9300 0.9229 37 1 2.1644 -0.1785 -2.0847 38 1 1.4600 -1.6760 -1.4042 39 1 6.7449 -2.1692 0.6083 40 1 4.2428 -0.5985 1.0653 41 1 3.6664 -2.2885 1.0473 42 1 0.6464 -2.3178 0.8076 43 1 1.5719 -4.6043 4.5655 44 1 0.5043 -3.2995 5.1436 45 1 -0.2520 -5.6335 5.7882 46 1 -1.4565 -4.6919 4.8814 47 1 -1.6069 -7.5788 5.0910 48 1 -1.7637 -9.4055 3.4560 49 1 -0.7900 -9.1275 1.2071 50 1 0.3373 -7.0269 0.6137 51 1 0.4148 -4.6016 1.0769 52 1 1.7895 -5.0220 2.1217 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000975091652.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:18 Heat of formation + Delta-G solvation = -5.073760 kcal Electronic energy + Delta-G solvation = -30888.247437 eV Core-core repulsion = 27045.062604 eV Total energy + Delta-G solvation = -3843.184832 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.49078 -39.45482 -37.98798 -35.67056 -33.87395 -33.11619 -32.49083 -30.71081 -30.44818 -29.08735 -27.91177 -26.75919 -25.61880 -24.42543 -23.54754 -22.74780 -22.22644 -20.62736 -19.94605 -19.30459 -18.58395 -16.93838 -16.68124 -16.48164 -15.79516 -15.68578 -14.99702 -14.67151 -14.51582 -14.11137 -14.02220 -13.94315 -13.79959 -13.60667 -13.29874 -13.17700 -12.94199 -12.72038 -12.43333 -12.10522 -12.02109 -11.96363 -11.66474 -11.54149 -11.49831 -11.34595 -11.07835 -11.01404 -10.98559 -10.83368 -10.77552 -10.45267 -10.37269 -10.22418 -9.97538 -9.86333 -9.64270 -9.30672 -8.84235 -8.62747 -8.59027 -8.39057 -6.80849 -5.69033 -3.02669 1.27697 1.28330 3.03590 3.40966 3.46078 3.48626 3.58632 3.66109 4.48529 4.51229 4.58816 4.82189 4.84718 4.90842 4.96365 5.02632 5.07442 5.21325 5.28694 5.30023 5.34667 5.41901 5.45268 5.54630 5.59303 5.65527 5.69624 5.80842 5.81914 5.88910 5.92773 5.95239 5.98186 6.04236 6.16512 6.17502 6.21731 6.26279 6.31290 6.40422 6.41489 6.42729 6.59556 6.59985 6.62021 6.69020 6.78698 6.93213 6.98476 7.59021 7.66050 7.84602 7.99288 8.27303 8.67911 9.23218 9.84210 10.50165 11.41749 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010905 B = 0.003274 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.966534 B = 8551.388131 C = 9780.881496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.090 4.090 3 C -0.126 4.126 4 C 0.144 3.856 5 N -0.602 5.602 6 C -0.231 4.231 7 H 0.077 0.923 8 C -0.005 4.005 9 N -0.915 5.915 10 Si 0.908 3.092 11 H -0.289 1.289 12 H -0.292 1.292 13 H -0.282 1.282 14 C 0.176 3.824 15 C 0.124 3.876 16 H 0.086 0.914 17 N -0.709 5.709 18 C 0.516 3.484 19 O -0.539 6.539 20 C -0.104 4.104 21 H 0.095 0.905 22 C -0.099 4.099 23 C -0.080 4.080 24 C -0.076 4.076 25 C -0.122 4.122 26 C -0.126 4.126 27 C -0.124 4.124 28 C -0.117 4.117 29 C -0.068 4.068 30 C -0.074 4.074 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.047 0.953 37 H 0.040 0.960 38 H 0.014 0.986 39 H 0.252 0.748 40 H 0.054 0.946 41 H 0.046 0.954 42 H 0.394 0.606 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.119 0.881 48 H 0.118 0.882 49 H 0.120 0.880 50 H 0.123 0.877 51 H 0.080 0.920 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.917 -6.278 5.796 19.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.091 4.091 3 C -0.184 4.184 4 C 0.018 3.982 5 N -0.328 5.328 6 C -0.359 4.359 7 H 0.095 0.905 8 C -0.202 4.202 9 N -0.562 5.562 10 Si 0.738 3.262 11 H -0.216 1.216 12 H -0.218 1.218 13 H -0.207 1.207 14 C 0.050 3.950 15 C 0.019 3.981 16 H 0.104 0.896 17 N -0.360 5.360 18 C 0.302 3.698 19 O -0.416 6.416 20 C -0.125 4.125 21 H 0.113 0.887 22 C -0.137 4.137 23 C -0.117 4.117 24 C -0.077 4.077 25 C -0.140 4.140 26 C -0.144 4.144 27 C -0.142 4.142 28 C -0.135 4.135 29 C -0.068 4.068 30 C -0.111 4.111 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.032 0.968 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.229 0.771 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.137 0.863 48 H 0.136 0.864 49 H 0.138 0.862 50 H 0.141 0.859 51 H 0.099 0.901 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.142 -6.015 6.435 19.272 hybrid contribution 0.590 -0.532 -1.042 1.310 sum -16.552 -6.546 5.393 18.599 Atomic orbital electron populations 1.21662 0.94786 1.01027 1.01297 1.22086 0.94341 0.96008 0.96696 1.21594 1.02524 0.93774 1.00460 1.21702 0.87786 0.94415 0.94300 1.44429 1.07798 1.78791 1.01826 1.19012 0.87432 1.40376 0.89113 0.90529 1.24815 0.97539 1.01902 0.95904 1.69987 1.22600 1.54287 1.09336 0.86168 0.83014 0.77392 0.79604 1.21649 1.21839 1.20720 1.21512 0.89768 1.00351 0.83354 1.22463 0.92367 0.86365 0.96916 0.89575 1.46038 1.44139 1.33241 1.12582 1.20381 0.83007 0.84094 0.82340 1.90694 1.41143 1.63290 1.46484 1.21300 1.00107 0.93542 0.97564 0.88687 1.21365 0.99268 0.98617 0.94428 1.20523 0.99777 0.94592 0.96835 1.19674 0.98077 0.95504 0.94397 1.21129 1.00027 0.93308 0.99555 1.21038 1.00505 0.98817 0.94028 1.21052 0.98811 0.97561 0.96759 1.21212 0.99441 0.93317 0.99558 1.19582 0.98181 0.95737 0.93324 1.20455 1.01177 0.90702 0.98742 0.92881 0.92708 0.93103 0.91199 0.92930 0.93381 0.94160 0.96822 0.93722 0.92841 0.93608 0.77107 0.90866 0.90253 0.90484 0.90615 0.86335 0.86352 0.86216 0.85926 0.90139 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 8.23 37.16 0.31 -1.34 16 2 C -0.09 -1.47 0.84 -152.10 -0.13 -1.59 16 3 C -0.13 -2.00 8.58 37.16 0.32 -1.69 16 4 C 0.14 2.81 6.16 -2.27 -0.01 2.80 16 5 N -0.60 -14.82 3.38 -169.77 -0.57 -15.40 16 6 C -0.23 -6.34 10.27 -15.06 -0.15 -6.49 16 7 H 0.08 2.04 7.84 -52.49 -0.41 1.62 16 8 C 0.00 -0.13 5.48 -17.43 -0.10 -0.23 16 9 N -0.92 -27.17 10.36 55.49 0.57 -26.60 16 10 Si 0.91 22.16 29.56 -169.99 -5.02 17.14 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.18 4.27 4.81 -3.07 -0.01 4.26 16 15 C 0.12 2.33 2.54 -66.09 -0.17 2.16 16 16 H 0.09 1.71 7.53 -51.93 -0.39 1.32 16 17 N -0.71 -11.42 4.42 -52.03 -0.23 -11.65 16 18 C 0.52 8.54 7.14 -10.99 -0.08 8.46 16 19 O -0.54 -11.11 15.53 5.56 0.09 -11.02 16 20 C -0.10 -1.30 2.55 -91.74 -0.23 -1.54 16 21 H 0.10 1.01 8.10 -51.92 -0.42 0.59 16 22 C -0.10 -1.21 4.72 -26.70 -0.13 -1.33 16 23 C -0.08 -0.79 5.67 -28.05 -0.16 -0.95 16 24 C -0.08 -0.84 5.74 -104.62 -0.60 -1.44 16 25 C -0.12 -1.21 9.61 -39.44 -0.38 -1.59 16 26 C -0.13 -1.20 10.05 -39.68 -0.40 -1.60 16 27 C -0.12 -1.24 10.05 -39.68 -0.40 -1.64 16 28 C -0.12 -1.32 9.61 -39.45 -0.38 -1.70 16 29 C -0.07 -0.81 5.74 -104.61 -0.60 -1.41 16 30 C -0.07 -0.92 4.82 -28.05 -0.14 -1.05 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.59 6.44 -51.93 -0.33 0.26 16 34 H 0.07 1.32 7.91 -51.93 -0.41 0.91 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 38 H 0.01 0.27 8.00 -51.93 -0.42 -0.15 16 39 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.05 1.49 7.30 -51.93 -0.38 1.11 16 41 H 0.05 1.28 7.51 -51.93 -0.39 0.89 16 42 H 0.39 5.48 6.63 -40.82 -0.27 5.21 16 43 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 44 H 0.08 0.99 7.80 -51.93 -0.41 0.59 16 45 H 0.08 0.67 8.13 -51.93 -0.42 0.24 16 46 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.12 0.92 8.05 -52.49 -0.42 0.50 16 48 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 49 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 50 H 0.12 1.27 8.05 -52.48 -0.42 0.84 16 51 H 0.08 0.92 7.81 -51.93 -0.41 0.52 16 52 H 0.09 1.29 8.11 -51.93 -0.42 0.86 16 LS Contribution 403.68 15.07 6.08 6.08 Total: -1.00 -32.27 403.68 -11.38 -43.65 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -8.86 Total: 5.71 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -3.44 Total: -7.91 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.23 Total: -53.64 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.27 -11.38 -43.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975091652.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.572 kcal (2) G-P(sol) polarization free energy of solvation -32.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds