Wall clock time and date at job start Wed Apr 1 2020 02:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38255 * 120.00320 * 2 1 4 4 C 1.38210 * 120.00435 * 179.97438 * 3 2 1 5 5 C 1.38257 * 119.99797 * 359.97438 * 4 3 2 6 6 C 1.38214 * 120.00196 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.00280 * 180.02562 * 6 5 4 8 8 H 1.08994 * 115.54766 * 154.28005 * 7 6 5 9 9 C 1.53006 * 117.49575 * 8.61327 * 7 6 5 10 10 C 1.52998 * 117.49813 * 299.99166 * 7 6 5 11 11 H 1.08997 * 117.50332 * 359.97438 * 10 7 6 12 12 C 1.50697 * 117.49530 * 214.97565 * 10 7 6 13 13 O 1.21281 * 120.00547 * 0.02562 * 12 10 7 14 14 N 1.34783 * 119.99881 * 180.02562 * 12 10 7 15 15 C 1.46502 * 119.99763 * 180.02562 * 14 12 10 16 16 H 1.08994 * 110.64074 * 323.30551 * 15 14 12 17 17 C 1.54325 * 110.72313 * 86.45465 * 15 14 12 18 18 N 1.47022 * 107.27353 * 96.16605 * 17 15 14 19 19 C 1.36936 * 125.64679 * 178.97789 * 18 17 15 20 20 H 1.08001 * 120.00084 * 174.79063 * 19 18 17 21 21 C 1.38811 * 120.00203 * 354.79079 * 19 18 17 22 22 N 1.31622 * 119.99852 * 7.05869 * 21 19 18 23 23 Si 1.86800 * 120.00229 * 187.05410 * 21 19 18 24 24 H 1.48499 * 109.47003 * 94.98907 * 23 21 19 25 25 H 1.48499 * 109.47110 * 214.98777 * 23 21 19 26 26 H 1.48494 * 109.47005 * 334.98609 * 23 21 19 27 27 C 1.47419 * 108.70154 * 358.94123 * 18 17 15 28 28 C 1.54906 * 104.83770 * 24.12828 * 27 18 17 29 29 C 1.52995 * 111.00558 * 204.91636 * 28 27 18 30 30 C 1.53003 * 111.00418 * 81.06158 * 28 27 18 31 31 C 1.38220 * 119.99821 * 179.72767 * 2 1 3 32 32 H 1.09002 * 109.47301 * 90.00199 * 1 2 3 33 33 H 1.09003 * 109.47078 * 209.99664 * 1 2 3 34 34 H 1.08992 * 109.47169 * 329.99951 * 1 2 3 35 35 H 1.08004 * 119.99440 * 0.02562 * 3 2 1 36 36 H 1.08000 * 119.99844 * 180.02562 * 4 3 2 37 37 H 1.08001 * 120.00287 * 180.02562 * 5 4 3 38 38 H 1.09004 * 117.49568 * 359.97438 * 9 7 6 39 39 H 1.08998 * 117.49764 * 145.02146 * 9 7 6 40 40 H 0.97003 * 119.99845 * 359.97438 * 14 12 10 41 41 H 1.08997 * 109.88106 * 215.58745 * 17 15 14 42 42 H 1.09005 * 109.87997 * 336.74841 * 17 15 14 43 43 H 0.97003 * 120.00327 * 179.97438 * 22 21 19 44 44 H 1.08998 * 110.36576 * 142.97136 * 27 18 17 45 45 H 1.09003 * 110.36627 * 265.17940 * 27 18 17 46 46 H 1.09006 * 109.46865 * 172.19935 * 29 28 27 47 47 H 1.09006 * 109.46998 * 292.19064 * 29 28 27 48 48 H 1.09000 * 109.47381 * 52.19808 * 29 28 27 49 49 H 1.09003 * 109.47210 * 307.80935 * 30 28 27 50 50 H 1.08997 * 109.46668 * 67.80117 * 30 28 27 51 51 H 1.08994 * 109.47305 * 187.81173 * 30 28 27 52 52 H 1.07992 * 120.00256 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5806 -1.1970 0.0016 7 6 4.3341 -2.5022 0.0034 8 1 3.8013 -3.3519 0.4301 9 6 5.8492 -2.4429 0.2083 10 6 5.2762 -2.7756 -1.1708 11 1 5.3507 -2.0117 -1.9447 12 6 5.3966 -4.1995 -1.6492 13 8 4.7593 -5.0774 -1.1070 14 7 6.2125 -4.4974 -2.6798 15 6 6.3291 -5.8816 -3.1452 16 1 6.2846 -6.5745 -2.3051 17 6 5.2293 -6.2048 -4.1785 18 7 5.8165 -6.0192 -5.5135 19 6 5.1725 -6.2251 -6.7043 20 1 5.6647 -5.9802 -7.6339 21 6 3.8869 -6.7486 -6.7166 22 7 3.2341 -6.9171 -5.5862 23 14 3.0833 -7.2138 -8.3375 24 1 3.2939 -8.6607 -8.5970 25 1 1.6273 -6.9302 -8.2675 26 1 3.6899 -6.4204 -9.4364 27 6 7.2132 -5.5738 -5.3579 28 6 7.6370 -6.0796 -3.9564 29 6 8.7711 -5.2262 -3.3852 30 6 8.0348 -7.5562 -4.0034 31 6 2.1980 -1.1970 0.0057 32 1 -0.3634 0.0000 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3633 0.8899 0.5138 35 1 1.6582 2.1326 0.0004 36 1 4.1204 2.1326 0.0010 37 1 5.3517 -0.0001 0.0024 38 1 6.3009 -1.4598 0.3415 39 1 6.3132 -3.2539 0.7695 40 1 6.7219 -3.7952 -3.1137 41 1 4.8998 -7.2368 -4.0586 42 1 4.3862 -5.5266 -4.0468 43 1 2.3356 -7.2825 -5.5948 44 1 7.8418 -6.0203 -6.1284 45 1 7.2720 -4.4864 -5.4043 46 1 8.9553 -5.5128 -2.3497 47 1 9.6758 -5.3842 -3.9723 48 1 8.4902 -4.1738 -3.4264 49 1 7.2395 -8.1320 -4.4768 50 1 8.9545 -7.6665 -4.5780 51 1 8.1939 -7.9222 -2.9891 52 1 1.6581 -2.1323 0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977322007.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:29 Heat of formation + Delta-G solvation = 12.190881 kcal Electronic energy + Delta-G solvation = -30008.282611 eV Core-core repulsion = 26165.846430 eV Total energy + Delta-G solvation = -3842.436181 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.51239 -40.57461 -39.54324 -37.37709 -35.69861 -34.45849 -33.39076 -32.62985 -31.77186 -29.91988 -28.14237 -27.76644 -27.44692 -25.99204 -24.68866 -24.26307 -22.98206 -22.12353 -21.26120 -20.61461 -20.00725 -18.70435 -18.48930 -17.61386 -17.27540 -16.74942 -16.28214 -16.08720 -15.73510 -15.66041 -15.47415 -15.23127 -14.87655 -14.66348 -14.63730 -14.06360 -14.04845 -13.81448 -13.58946 -13.41271 -13.19522 -13.14757 -13.02356 -12.97234 -12.87528 -12.77857 -12.72392 -12.59089 -12.22149 -12.11694 -11.87671 -11.86303 -11.77372 -11.57092 -11.51376 -11.42876 -11.30767 -10.90481 -10.71982 -9.98566 -9.65993 -9.41042 -8.90298 -7.85983 -5.21730 0.36977 0.48271 1.42051 1.44547 1.53245 1.53687 2.18228 2.47682 2.66280 3.07188 3.32095 3.47712 3.54026 3.67755 3.72765 3.87425 3.95791 3.96084 4.06384 4.07516 4.14815 4.22875 4.25096 4.39561 4.49655 4.52461 4.53822 4.68071 4.74659 4.78301 4.84415 4.85818 4.88462 4.94581 4.95479 5.00378 5.05532 5.08700 5.14141 5.16412 5.17418 5.30414 5.31765 5.36474 5.45347 5.56924 5.58508 5.68478 5.70637 5.72808 5.74785 6.13581 6.16156 6.61264 7.06336 7.31148 7.76664 8.41431 9.23629 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010029 B = 0.002974 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.301636 B = 9412.116486 C =11349.099622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.096 4.096 3 C -0.132 4.132 4 C -0.115 4.115 5 C -0.128 4.128 6 C -0.059 4.059 7 C -0.097 4.097 8 H 0.097 0.903 9 C -0.110 4.110 10 C -0.180 4.180 11 H 0.140 0.860 12 C 0.534 3.466 13 O -0.590 6.590 14 N -0.695 5.695 15 C 0.138 3.862 16 H 0.074 0.926 17 C 0.193 3.807 18 N -0.620 5.620 19 C -0.237 4.237 20 H 0.087 0.913 21 C -0.069 4.069 22 N -0.952 5.952 23 Si 0.976 3.024 24 H -0.288 1.288 25 H -0.300 1.300 26 H -0.262 1.262 27 C 0.137 3.863 28 C -0.073 4.073 29 C -0.123 4.123 30 C -0.124 4.124 31 C -0.138 4.138 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.143 0.857 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.104 0.896 40 H 0.410 0.590 41 H 0.005 0.995 42 H -0.006 1.006 43 H 0.243 0.757 44 H 0.049 0.951 45 H 0.031 0.969 46 H 0.066 0.934 47 H 0.078 0.922 48 H 0.065 0.935 49 H 0.027 0.973 50 H 0.079 0.921 51 H 0.065 0.935 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.840 17.318 13.324 23.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.096 4.096 3 C -0.150 4.150 4 C -0.132 4.132 5 C -0.146 4.146 6 C -0.059 4.059 7 C -0.116 4.116 8 H 0.116 0.884 9 C -0.147 4.147 10 C -0.200 4.200 11 H 0.157 0.843 12 C 0.322 3.678 13 O -0.471 6.471 14 N -0.346 5.346 15 C 0.032 3.968 16 H 0.092 0.908 17 C 0.067 3.933 18 N -0.346 5.346 19 C -0.366 4.366 20 H 0.105 0.895 21 C -0.262 4.262 22 N -0.602 5.602 23 Si 0.805 3.195 24 H -0.215 1.215 25 H -0.227 1.227 26 H -0.187 1.187 27 C 0.012 3.988 28 C -0.074 4.074 29 C -0.181 4.181 30 C -0.182 4.182 31 C -0.157 4.157 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.160 0.840 36 H 0.169 0.831 37 H 0.165 0.835 38 H 0.160 0.840 39 H 0.123 0.877 40 H 0.248 0.752 41 H 0.023 0.977 42 H 0.012 0.988 43 H 0.052 0.948 44 H 0.067 0.933 45 H 0.049 0.951 46 H 0.085 0.915 47 H 0.097 0.903 48 H 0.083 0.917 49 H 0.047 0.953 50 H 0.098 0.902 51 H 0.084 0.916 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.224 16.630 13.597 23.001 hybrid contribution -1.347 -0.811 -1.266 2.019 sum 6.877 15.819 12.331 21.203 Atomic orbital electron populations 1.20838 0.90095 1.03530 1.02723 1.20189 0.97209 0.93034 0.99202 1.21366 0.94943 0.97765 1.00914 1.21477 0.94325 0.98746 0.98694 1.21299 1.01200 0.91246 1.00844 1.19170 0.93191 0.93327 1.00174 1.20976 0.93324 0.96521 1.00786 0.88438 1.23266 0.93416 1.05069 0.92913 1.22286 1.09130 0.93715 0.94919 0.84269 1.20240 0.77935 0.90268 0.79317 1.90674 1.46388 1.50868 1.59122 1.45778 1.45422 1.09834 1.33516 1.22059 0.96239 0.83031 0.95466 0.90792 1.21073 0.92044 0.96489 0.83710 1.44688 1.09171 1.79202 1.01561 1.19479 0.97203 1.34595 0.85370 0.89476 1.25707 0.98110 1.02185 1.00215 1.70264 1.12048 1.51625 1.26221 0.85085 0.76973 0.78086 0.79393 1.21464 1.22709 1.18681 1.21913 0.84866 0.96545 0.95434 1.21972 0.93434 0.97716 0.94281 1.21651 0.96427 0.98755 1.01220 1.21598 1.01095 0.93466 1.02011 1.21044 0.94184 0.98113 1.02324 0.91088 0.91716 0.89714 0.83970 0.83134 0.83459 0.83957 0.87719 0.75175 0.97719 0.98804 0.94820 0.93258 0.95120 0.91542 0.90281 0.91655 0.95324 0.90173 0.91597 0.87417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.97 10.01 71.23 0.71 -1.25 16 2 C -0.10 -2.06 5.88 -19.87 -0.12 -2.18 16 3 C -0.13 -2.32 9.70 22.27 0.22 -2.11 16 4 C -0.11 -1.84 10.05 22.27 0.22 -1.62 16 5 C -0.13 -2.31 9.30 22.27 0.21 -2.10 16 6 C -0.06 -1.39 5.61 -19.86 -0.11 -1.50 16 7 C -0.10 -2.49 5.55 -11.54 -0.06 -2.56 16 8 H 0.10 3.04 7.67 -2.39 -0.02 3.02 16 9 C -0.11 -2.02 9.56 30.60 0.29 -1.73 16 10 C -0.18 -4.59 5.82 -11.54 -0.07 -4.66 16 11 H 0.14 3.08 8.14 -2.39 -0.02 3.06 16 12 C 0.53 18.99 7.61 87.66 0.67 19.65 16 13 O -0.59 -26.78 15.98 -3.03 -0.05 -26.83 16 14 N -0.69 -23.12 4.57 -436.90 -2.00 -25.11 16 15 C 0.14 5.43 2.51 46.18 0.12 5.55 16 16 H 0.07 3.10 7.60 -2.39 -0.02 3.08 16 17 C 0.19 10.27 4.80 86.73 0.42 10.69 16 18 N -0.62 -32.04 3.38 -692.00 -2.34 -34.38 16 19 C -0.24 -13.51 10.27 84.03 0.86 -12.65 16 20 H 0.09 4.67 7.84 -2.91 -0.02 4.64 16 21 C -0.07 -4.11 5.48 84.86 0.46 -3.65 16 22 N -0.95 -61.21 10.36 21.65 0.22 -60.98 16 23 Si 0.98 47.43 29.56 68.60 2.03 49.45 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 25 H -0.30 -14.85 7.11 99.48 0.71 -14.15 16 26 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 27 C 0.14 5.26 6.14 86.86 0.53 5.79 16 28 C -0.07 -2.29 0.83 -50.79 -0.04 -2.33 16 29 C -0.12 -2.60 8.22 71.98 0.59 -2.01 16 30 C -0.12 -3.82 8.57 71.98 0.62 -3.21 16 31 C -0.14 -3.55 9.39 22.27 0.21 -3.34 16 32 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.11 8.08 -2.39 -0.02 1.09 16 34 H 0.08 1.08 8.08 -2.39 -0.02 1.06 16 35 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 36 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 37 H 0.15 1.81 6.02 -2.91 -0.02 1.79 16 38 H 0.14 1.59 6.18 -2.39 -0.01 1.57 16 39 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.41 11.02 6.90 -92.71 -0.64 10.38 16 41 H 0.00 0.29 7.30 -2.39 -0.02 0.27 16 42 H -0.01 -0.39 7.51 -2.38 -0.02 -0.41 16 43 H 0.24 15.33 8.31 -92.71 -0.77 14.56 16 44 H 0.05 1.82 8.05 -2.39 -0.02 1.81 16 45 H 0.03 1.11 7.99 -2.39 -0.02 1.09 16 46 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 47 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 48 H 0.06 1.22 6.38 -2.39 -0.02 1.21 16 49 H 0.03 1.10 7.91 -2.39 -0.02 1.08 16 50 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 51 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 52 H 0.11 2.95 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -80.23 413.47 3.86 -76.37 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 0.27 Total: 26.69 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 5.73 Total: -5.20 kcal Atomic # 7 Polarization: -116.36 SS G_CDS: -4.11 Total: -120.47 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.05 Total: -26.83 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.45 kcal Total: -80.23 3.86 -76.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977322007.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.557 kcal (2) G-P(sol) polarization free energy of solvation -80.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds