Wall clock time and date at job start Wed Apr 1 2020 02:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 110.78129 * 2 1 4 4 C 1.54323 * 110.71652 * 236.76101 * 2 1 3 5 5 N 1.47022 * 107.27521 * 263.83055 * 4 2 1 6 6 C 1.36930 * 125.65025 * 181.09872 * 5 4 2 7 7 H 1.08004 * 120.00104 * 359.97438 * 6 5 4 8 8 C 1.38817 * 119.99868 * 179.97438 * 6 5 4 9 9 N 1.31621 * 120.00082 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99868 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47271 * 359.97438 * 10 8 6 12 12 H 1.48506 * 109.47157 * 119.99487 * 10 8 6 13 13 H 1.48500 * 109.47206 * 239.99413 * 10 8 6 14 14 C 1.47433 * 108.69797 * 1.05925 * 5 4 2 15 15 C 1.54908 * 104.83315 * 335.87270 * 14 5 4 16 16 H 1.09005 * 111.00118 * 155.12256 * 15 14 5 17 17 N 1.46500 * 111.00311 * 278.93446 * 15 14 5 18 18 C 1.34777 * 120.00039 * 273.54749 * 17 15 14 19 19 O 1.21289 * 120.00005 * 0.02562 * 18 17 15 20 20 C 1.50696 * 120.00221 * 180.02562 * 18 17 15 21 21 C 1.53006 * 109.47279 * 174.29595 * 20 18 17 22 22 H 1.08994 * 110.26807 * 52.20370 * 21 20 18 23 23 C 1.54343 * 110.38312 * 290.07895 * 21 20 18 24 24 C 1.54503 * 102.31717 * 214.50179 * 23 21 20 25 25 C 1.51369 * 105.09010 * 26.65567 * 24 23 21 26 26 C 1.38495 * 130.39195 * 162.74402 * 25 24 23 27 27 C 1.38097 * 120.21929 * 179.68094 * 26 25 24 28 28 C 1.38258 * 119.93367 * 0.02562 * 27 26 25 29 29 C 1.38106 * 119.93119 * 0.02562 * 28 27 26 30 30 C 1.38209 * 109.75819 * 342.46467 * 25 24 23 31 31 H 1.09000 * 109.46932 * 296.75852 * 1 2 3 32 32 H 1.08999 * 109.47384 * 56.75470 * 1 2 3 33 33 H 1.08998 * 109.47423 * 176.75803 * 1 2 3 34 34 H 1.08997 * 109.47145 * 183.23793 * 3 2 1 35 35 H 1.08997 * 109.47249 * 303.24087 * 3 2 1 36 36 H 1.09000 * 109.46836 * 63.23962 * 3 2 1 37 37 H 1.09001 * 109.88309 * 144.41163 * 4 2 1 38 38 H 1.09000 * 109.88518 * 23.25359 * 4 2 1 39 39 H 0.96992 * 119.99909 * 179.97438 * 9 8 6 40 40 H 1.09001 * 110.36294 * 217.02986 * 14 5 4 41 41 H 1.08998 * 110.36174 * 94.71159 * 14 5 4 42 42 H 0.96998 * 120.00242 * 93.54938 * 17 15 14 43 43 H 1.08998 * 109.47292 * 54.29169 * 20 18 17 44 44 H 1.08999 * 109.47048 * 294.29294 * 20 18 17 45 45 H 1.09007 * 110.82140 * 332.91932 * 23 21 20 46 46 H 1.09004 * 110.82446 * 96.26754 * 23 21 20 47 47 H 1.09001 * 110.40930 * 267.72158 * 24 23 21 48 48 H 1.09008 * 110.27631 * 145.51970 * 24 23 21 49 49 H 1.08006 * 119.88984 * 359.70773 * 26 25 24 50 50 H 1.07999 * 120.03739 * 179.97438 * 27 26 25 51 51 H 1.08001 * 120.03662 * 179.97438 * 28 27 26 52 52 H 1.08008 * 119.89096 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0759 -0.7912 -1.2073 5 7 2.3715 -2.1532 -0.7391 6 6 2.8944 -3.1633 -1.5016 7 1 3.1249 -2.9904 -2.5424 8 6 3.1280 -4.4096 -0.9367 9 7 2.8475 -4.6202 0.3319 10 14 3.8406 -5.7878 -1.9770 11 1 4.0651 -5.2981 -3.3609 12 1 5.1318 -6.2319 -1.3930 13 1 2.8911 -6.9292 -2.0041 14 6 2.0125 -2.2509 0.6875 15 6 2.0790 -0.7955 1.2137 16 1 1.4401 -0.6665 2.0875 17 7 3.4595 -0.4083 1.5144 18 6 3.9888 -0.6841 2.7228 19 8 3.3224 -1.2532 3.5612 20 6 5.4087 -0.2853 3.0322 21 6 5.7131 -0.5823 4.5020 22 1 5.4581 -1.6151 4.7392 23 6 4.9348 0.3855 5.4184 24 6 5.9202 0.5943 6.5899 25 6 7.2929 0.3586 5.9970 26 6 8.5470 0.7059 6.4711 27 6 9.6782 0.3758 5.7511 28 6 9.5594 -0.3033 4.5526 29 6 8.3096 -0.6496 4.0777 30 6 7.1741 -0.3204 4.7991 31 1 -0.3633 0.4627 0.9176 32 1 -0.3634 0.5634 -0.8594 33 1 -0.3634 -1.0260 -0.0581 34 1 3.1610 1.4061 -0.0580 35 1 1.6751 1.9700 -0.8595 36 1 1.7691 1.9342 0.9176 37 1 2.9868 -0.3207 -1.5776 38 1 1.3262 -0.8254 -1.9978 39 1 3.0104 -5.4911 0.7265 40 1 2.7293 -2.8789 1.2168 41 1 1.0038 -2.6488 0.7984 42 1 3.9927 0.0465 0.8437 43 1 5.5363 0.7805 2.8429 44 1 6.0914 -0.8512 2.3983 45 1 4.7320 1.3258 4.9056 46 1 4.0086 -0.0714 5.7669 47 1 5.7231 -0.1246 7.3851 48 1 5.8429 1.6124 6.9717 49 1 8.6406 1.2364 7.4072 50 1 10.6546 0.6484 6.1233 51 1 10.4429 -0.5619 3.9879 52 1 8.2176 -1.1804 3.1416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977375462.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:49 Heat of formation + Delta-G solvation = 3.422538 kcal Electronic energy + Delta-G solvation = -30619.622918 eV Core-core repulsion = 26776.806513 eV Total energy + Delta-G solvation = -3842.816405 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.44772 -39.48668 -37.89423 -35.78073 -33.79317 -32.94804 -32.23557 -30.69320 -29.99820 -28.81791 -28.04356 -26.85365 -25.62069 -25.13820 -23.20837 -22.68293 -21.05956 -20.84704 -20.04096 -19.51118 -18.56482 -17.02471 -16.68158 -16.19166 -15.79409 -15.28573 -15.22284 -14.93870 -14.73751 -14.34533 -13.91450 -13.77292 -13.63256 -13.27956 -13.18201 -13.01005 -12.84689 -12.70164 -12.48510 -12.14368 -11.96241 -11.84234 -11.72929 -11.54603 -11.26615 -11.21934 -11.14509 -10.97498 -10.92641 -10.78464 -10.73927 -10.67349 -10.37808 -10.17645 -9.91144 -9.77173 -9.67956 -9.29111 -8.86318 -8.66458 -8.54606 -8.27803 -6.79229 -5.61347 -3.04558 1.29396 1.32488 3.20423 3.39908 3.45205 3.48128 3.64434 3.77547 4.36035 4.49634 4.53903 4.90022 4.92471 4.93632 4.99563 5.06413 5.23480 5.24007 5.27469 5.31124 5.41192 5.47739 5.53217 5.53644 5.56719 5.64250 5.76675 5.81390 5.87889 5.88475 5.90735 6.00036 6.04148 6.07968 6.11756 6.18769 6.21206 6.27783 6.31613 6.42615 6.43671 6.46952 6.49913 6.63160 6.64176 6.71747 6.80569 6.93909 7.04606 7.53104 7.64584 7.91131 8.11752 8.41837 8.81806 9.23814 9.85368 10.49685 11.40930 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010716 B = 0.003203 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.373773 B = 8739.800123 C =10364.439447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 C -0.130 4.130 4 C 0.143 3.857 5 N -0.601 5.601 6 C -0.224 4.224 7 H 0.076 0.924 8 C -0.009 4.009 9 N -0.916 5.916 10 Si 0.911 3.089 11 H -0.281 1.281 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.146 3.854 15 C 0.126 3.874 16 H 0.083 0.917 17 N -0.704 5.704 18 C 0.514 3.486 19 O -0.542 6.542 20 C -0.132 4.132 21 C -0.033 4.033 22 H 0.099 0.901 23 C -0.109 4.109 24 C -0.083 4.083 25 C -0.096 4.096 26 C -0.111 4.111 27 C -0.125 4.125 28 C -0.122 4.122 29 C -0.105 4.105 30 C -0.086 4.086 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.021 0.979 38 H 0.023 0.977 39 H 0.251 0.749 40 H 0.113 0.887 41 H 0.018 0.982 42 H 0.394 0.606 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.068 0.932 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.072 0.928 49 H 0.117 0.883 50 H 0.120 0.880 51 H 0.122 0.878 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.670 15.002 9.175 19.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.088 4.088 3 C -0.188 4.188 4 C 0.017 3.983 5 N -0.327 5.327 6 C -0.353 4.353 7 H 0.094 0.906 8 C -0.205 4.205 9 N -0.564 5.564 10 Si 0.742 3.258 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.021 3.979 15 C 0.020 3.980 16 H 0.101 0.899 17 N -0.355 5.355 18 C 0.300 3.700 19 O -0.420 6.420 20 C -0.172 4.172 21 C -0.052 4.052 22 H 0.117 0.883 23 C -0.147 4.147 24 C -0.120 4.120 25 C -0.096 4.096 26 C -0.129 4.129 27 C -0.143 4.143 28 C -0.140 4.140 29 C -0.123 4.123 30 C -0.086 4.086 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.062 0.938 40 H 0.131 0.869 41 H 0.036 0.964 42 H 0.229 0.771 43 H 0.105 0.895 44 H 0.112 0.888 45 H 0.087 0.913 46 H 0.104 0.896 47 H 0.098 0.902 48 H 0.090 0.910 49 H 0.135 0.865 50 H 0.138 0.862 51 H 0.140 0.860 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.233 14.364 9.777 18.821 hybrid contribution 0.731 -0.640 -1.073 1.448 sum 7.964 13.724 8.704 18.098 Atomic orbital electron populations 1.21684 0.93635 1.02460 1.00809 1.21830 0.95949 0.94526 0.96538 1.21711 1.00362 0.95489 1.01232 1.21404 0.96375 0.86866 0.93646 1.44466 1.74162 1.06636 1.07418 1.19066 1.34057 0.89277 0.92865 0.90597 1.24788 1.01780 0.97602 0.96330 1.69822 1.53648 1.22148 1.10756 0.86061 0.78411 0.82302 0.79069 1.20611 1.21833 1.21793 1.22302 0.99975 0.90660 0.84991 1.22462 0.81535 0.98040 0.95932 0.89897 1.45825 1.14836 1.60139 1.14660 1.20380 0.88669 0.78899 0.82059 1.90671 1.62363 1.41584 1.47352 1.21711 0.94986 1.02931 0.97559 1.20459 0.89388 1.01705 0.93629 0.88259 1.22371 0.98260 0.98961 0.95076 1.21121 0.90558 1.01882 0.98438 1.20647 0.94769 0.98351 0.95846 1.20595 0.91368 1.01028 0.99956 1.21001 0.98097 0.99645 0.95530 1.21036 0.97123 0.99323 0.96541 1.20721 0.91485 1.00101 1.00011 1.20654 0.94969 0.97670 0.95282 0.93110 0.92767 0.91775 0.92933 0.92788 0.92850 0.96147 0.95958 0.93779 0.86895 0.96411 0.77113 0.89466 0.88818 0.91344 0.89578 0.90207 0.90972 0.86529 0.86188 0.86034 0.86042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 8.41 37.16 0.31 -1.62 16 2 C -0.09 -1.43 0.81 -152.68 -0.12 -1.55 16 3 C -0.13 -1.68 8.07 37.16 0.30 -1.38 16 4 C 0.14 2.85 6.41 -3.06 -0.02 2.83 16 5 N -0.60 -14.92 3.39 -170.07 -0.58 -15.50 16 6 C -0.22 -6.17 10.27 -15.06 -0.15 -6.32 16 7 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 8 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 9 N -0.92 -27.09 10.09 55.49 0.56 -26.53 16 10 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 C 0.15 3.58 5.27 -2.53 -0.01 3.56 16 15 C 0.13 2.39 2.56 -65.78 -0.17 2.22 16 16 H 0.08 1.61 7.63 -51.93 -0.40 1.22 16 17 N -0.70 -11.98 4.69 -51.73 -0.24 -12.22 16 18 C 0.51 8.86 7.59 -10.99 -0.08 8.78 16 19 O -0.54 -11.20 14.88 5.55 0.08 -11.12 16 20 C -0.13 -1.76 5.04 -27.88 -0.14 -1.90 16 21 C -0.03 -0.44 2.47 -90.74 -0.22 -0.67 16 22 H 0.10 1.54 7.80 -51.93 -0.40 1.13 16 23 C -0.11 -1.30 5.88 -25.24 -0.15 -1.45 16 24 C -0.08 -0.86 6.78 -26.77 -0.18 -1.04 16 25 C -0.10 -1.11 6.14 -104.21 -0.64 -1.75 16 26 C -0.11 -1.15 10.04 -39.54 -0.40 -1.54 16 27 C -0.12 -1.22 10.05 -39.63 -0.40 -1.62 16 28 C -0.12 -1.27 10.05 -39.62 -0.40 -1.67 16 29 C -0.11 -1.24 9.68 -39.53 -0.38 -1.62 16 30 C -0.09 -1.07 5.61 -104.21 -0.58 -1.65 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 1.10 7.57 -51.93 -0.39 0.71 16 34 H 0.05 0.64 6.35 -51.93 -0.33 0.31 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.02 0.40 7.77 -51.93 -0.40 0.00 16 38 H 0.02 0.45 7.84 -51.93 -0.41 0.05 16 39 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.11 3.23 5.87 -51.93 -0.30 2.92 16 41 H 0.02 0.48 7.80 -51.93 -0.41 0.07 16 42 H 0.39 5.98 6.88 -40.82 -0.28 5.70 16 43 H 0.09 0.97 7.97 -51.93 -0.41 0.56 16 44 H 0.09 1.23 7.57 -51.93 -0.39 0.84 16 45 H 0.07 0.77 7.80 -51.92 -0.41 0.36 16 46 H 0.09 1.12 7.84 -51.93 -0.41 0.72 16 47 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 49 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 50 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 51 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 52 H 0.12 1.34 7.67 -52.48 -0.40 0.94 16 LS Contribution 404.04 15.07 6.09 6.09 Total: -1.00 -32.01 404.04 -11.35 -43.36 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -8.70 Total: 7.50 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -3.54 Total: -8.74 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -0.26 Total: -54.25 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.08 Total: -11.12 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.01 -11.35 -43.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977375462.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.785 kcal (2) G-P(sol) polarization free energy of solvation -32.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds