Wall clock time and date at job start Wed Apr 1 2020 02:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 110.88739 * 2 1 4 4 C 1.54914 * 111.00263 * 123.87742 * 2 1 3 5 5 N 1.47426 * 104.82992 * 81.06932 * 4 2 1 6 6 C 1.36936 * 125.64483 * 204.16378 * 5 4 2 7 7 H 1.08004 * 120.00405 * 359.97438 * 6 5 4 8 8 C 1.38812 * 120.00093 * 179.97438 * 6 5 4 9 9 N 1.31626 * 119.99909 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00506 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.47109 * 60.00305 * 10 8 6 12 12 H 1.48499 * 109.47578 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47363 * 300.00729 * 10 8 6 14 14 C 1.47018 * 108.70517 * 24.12623 * 5 4 2 15 15 C 1.54325 * 107.40412 * 358.86539 * 14 5 4 16 16 H 1.09002 * 110.72265 * 219.52294 * 15 14 5 17 17 N 1.46501 * 110.72113 * 96.24493 * 15 14 5 18 18 C 1.34773 * 119.99782 * 86.45299 * 17 15 14 19 19 O 1.21280 * 120.00408 * 0.02562 * 18 17 15 20 20 C 1.50700 * 119.99682 * 179.97438 * 18 17 15 21 21 C 1.53005 * 109.46991 * 180.02562 * 20 18 17 22 22 H 1.09002 * 110.26980 * 52.92442 * 21 20 18 23 23 C 1.54340 * 110.30546 * 175.00444 * 21 20 18 24 24 C 1.54341 * 102.39822 * 92.57174 * 23 21 20 25 25 C 1.51380 * 105.16625 * 26.34724 * 24 23 21 26 26 C 1.38498 * 130.39108 * 162.80872 * 25 24 23 27 27 C 1.38101 * 120.21471 * 180.02562 * 26 25 24 28 28 C 1.38259 * 119.93551 * 359.97438 * 27 26 25 29 29 C 1.38101 * 119.93266 * 0.02562 * 28 27 26 30 30 C 1.38215 * 109.75662 * 342.81025 * 25 24 23 31 31 H 1.08998 * 109.47124 * 297.57088 * 1 2 3 32 32 H 1.09000 * 109.46711 * 57.57440 * 1 2 3 33 33 H 1.08996 * 109.47179 * 177.57339 * 1 2 3 34 34 H 1.08997 * 109.47394 * 182.42099 * 3 2 1 35 35 H 1.08994 * 109.47153 * 302.42597 * 3 2 1 36 36 H 1.09004 * 109.47185 * 62.42577 * 3 2 1 37 37 H 1.08999 * 110.37121 * 322.22667 * 4 2 1 38 38 H 1.09001 * 110.45739 * 199.95279 * 4 2 1 39 39 H 0.96997 * 120.00493 * 180.02562 * 9 8 6 40 40 H 1.09002 * 109.88241 * 118.36067 * 14 5 4 41 41 H 1.09000 * 109.88049 * 239.37196 * 14 5 4 42 42 H 0.97002 * 119.99754 * 266.45742 * 17 15 14 43 43 H 1.09000 * 109.47622 * 300.00278 * 20 18 17 44 44 H 1.08989 * 109.47257 * 60.00481 * 20 18 17 45 45 H 1.09000 * 110.82487 * 210.80378 * 23 21 20 46 46 H 1.09005 * 110.82072 * 334.15073 * 23 21 20 47 47 H 1.08993 * 110.30853 * 145.27151 * 24 23 21 48 48 H 1.09002 * 110.30431 * 267.33308 * 24 23 21 49 49 H 1.08002 * 119.89072 * 359.97438 * 26 25 24 50 50 H 1.07997 * 120.03619 * 180.02562 * 27 26 25 51 51 H 1.07994 * 120.02984 * 180.02562 * 28 27 26 52 52 H 1.08003 * 119.89464 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0852 -0.8062 1.2007 5 7 2.0139 -2.2156 0.7742 6 6 1.9447 -3.2992 1.6085 7 1 1.9395 -3.1571 2.6792 8 6 1.8811 -4.5805 1.0782 9 7 1.8879 -4.7538 -0.2266 10 14 1.7873 -6.0588 2.2162 11 1 0.5685 -5.9585 3.0587 12 1 1.7296 -7.3031 1.4077 13 1 2.9897 -6.0902 3.0870 14 6 2.0286 -2.2649 -0.6951 15 6 2.0842 -0.8095 -1.2052 16 1 1.4491 -0.6836 -2.0821 17 7 3.4640 -0.4167 -1.5021 18 6 3.9940 -0.6802 -2.7129 19 8 3.3285 -1.2421 -3.5569 20 6 5.4131 -0.2756 -3.0185 21 6 5.7639 -0.6874 -4.4497 22 1 5.0202 -0.3012 -5.1468 23 6 7.1692 -0.1721 -4.8261 24 6 8.0715 -1.3671 -4.4519 25 6 7.1790 -2.5853 -4.5568 26 6 7.5017 -3.9292 -4.6463 27 6 6.5033 -4.8793 -4.7348 28 6 5.1771 -4.4886 -4.7334 29 6 4.8534 -3.1490 -4.6442 30 6 5.8532 -2.1947 -4.5555 31 1 -0.3633 0.4756 0.9109 32 1 -0.3633 0.5511 -0.8675 33 1 -0.3633 -1.0267 -0.0435 34 1 3.1643 1.4029 -0.0434 35 1 1.6902 1.9653 -0.8674 36 1 1.7606 1.9385 0.9110 37 1 1.4672 -0.6453 2.0840 38 1 3.1180 -0.5233 1.4046 39 1 1.8431 -5.6491 -0.5972 40 1 2.9064 -2.8120 -1.0389 41 1 1.1232 -2.7508 -1.0587 42 1 3.9961 0.0330 -0.8272 43 1 5.5128 0.8051 -2.9169 44 1 6.0899 -0.7699 -2.3217 45 1 7.2310 0.0407 -5.8933 46 1 7.4278 0.7105 -4.2411 47 1 8.9036 -1.4465 -5.1514 48 1 8.4436 -1.2558 -3.4334 49 1 8.5375 -4.2351 -4.6478 50 1 6.7582 -5.9265 -4.8040 51 1 4.3951 -5.2303 -4.8021 52 1 3.8172 -2.8445 -4.6436 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977375465.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:01 Heat of formation + Delta-G solvation = 7.994382 kcal Electronic energy + Delta-G solvation = -31304.437645 eV Core-core repulsion = 27461.819490 eV Total energy + Delta-G solvation = -3842.618155 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.42067 -39.38178 -37.78891 -35.80180 -33.82904 -32.93361 -31.70840 -30.67475 -29.84905 -28.68808 -27.93452 -26.82101 -25.62734 -25.29962 -23.25408 -22.42962 -20.82923 -20.68630 -19.95523 -19.58070 -18.63688 -16.86884 -16.58805 -16.24498 -15.85059 -15.26779 -14.95526 -14.67838 -14.63877 -14.37728 -13.92482 -13.87990 -13.52416 -13.31203 -12.90439 -12.89533 -12.56183 -12.47896 -12.31846 -12.08237 -11.98996 -11.85136 -11.66326 -11.55898 -11.35784 -11.06806 -11.03913 -10.96316 -10.89299 -10.74423 -10.73452 -10.40684 -10.23711 -10.21533 -9.95949 -9.85456 -9.61034 -9.29573 -8.58903 -8.46619 -8.33263 -8.27354 -6.78733 -5.65218 -3.00069 1.63214 1.74387 3.11201 3.42303 3.46548 3.48407 3.63860 4.06440 4.48998 4.52957 4.58599 4.84787 4.95831 5.05532 5.18684 5.25387 5.29489 5.31707 5.33821 5.39613 5.51799 5.56262 5.57456 5.62520 5.67490 5.70675 5.82585 5.82989 5.89399 5.91698 5.99197 6.05186 6.09750 6.16775 6.17749 6.22916 6.26643 6.33854 6.42356 6.48717 6.60564 6.63094 6.69991 6.74114 6.79108 6.92740 7.00603 7.05232 7.36301 7.59121 7.70536 7.87778 8.03281 8.30175 8.75811 9.25907 9.86624 10.52247 11.44935 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009509 B = 0.004194 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.854241 B = 6674.050296 C = 8808.795948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.090 4.090 3 C -0.130 4.130 4 C 0.144 3.856 5 N -0.602 5.602 6 C -0.231 4.231 7 H 0.076 0.924 8 C -0.005 4.005 9 N -0.916 5.916 10 Si 0.909 3.091 11 H -0.285 1.285 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.177 3.823 15 C 0.126 3.874 16 H 0.085 0.915 17 N -0.712 5.712 18 C 0.512 3.488 19 O -0.536 6.536 20 C -0.130 4.130 21 C -0.033 4.033 22 H 0.087 0.913 23 C -0.117 4.117 24 C -0.079 4.079 25 C -0.107 4.107 26 C -0.120 4.120 27 C -0.121 4.121 28 C -0.123 4.123 29 C -0.081 4.081 30 C -0.087 4.087 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.039 0.961 38 H 0.014 0.986 39 H 0.253 0.747 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.393 0.607 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.076 0.924 49 H 0.112 0.888 50 H 0.117 0.883 51 H 0.121 0.879 52 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.440 12.043 -8.120 17.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C -0.188 4.188 4 C 0.018 3.982 5 N -0.329 5.329 6 C -0.360 4.360 7 H 0.094 0.906 8 C -0.202 4.202 9 N -0.563 5.563 10 Si 0.739 3.261 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.213 1.213 14 C 0.052 3.948 15 C 0.021 3.979 16 H 0.103 0.897 17 N -0.364 5.364 18 C 0.298 3.702 19 O -0.414 6.414 20 C -0.170 4.170 21 C -0.052 4.052 22 H 0.105 0.895 23 C -0.154 4.154 24 C -0.116 4.116 25 C -0.107 4.107 26 C -0.138 4.138 27 C -0.139 4.139 28 C -0.141 4.141 29 C -0.098 4.098 30 C -0.087 4.087 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.032 0.968 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.228 0.772 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.089 0.911 48 H 0.095 0.905 49 H 0.130 0.870 50 H 0.135 0.865 51 H 0.139 0.861 52 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 8.942 11.382 -8.752 16.914 hybrid contribution 0.255 -0.889 1.135 1.464 sum 9.197 10.492 -7.617 15.896 Atomic orbital electron populations 1.21589 0.93409 1.02797 1.00480 1.22047 0.96285 0.94078 0.96708 1.21672 1.00204 0.95645 1.01292 1.21610 0.96465 0.85870 0.94252 1.44420 1.86913 0.99640 1.01898 1.18958 1.44139 0.84051 0.88829 0.90647 1.24791 1.02202 0.97289 0.95916 1.69957 1.56430 1.20821 1.09101 0.86255 0.77826 0.82468 0.79514 1.21210 1.21638 1.21297 1.21489 1.01509 0.88648 0.83185 1.22457 0.81326 0.97442 0.96710 0.89671 1.46061 1.15067 1.60728 1.14500 1.20439 0.88762 0.78887 0.82105 1.90576 1.62457 1.41383 1.46962 1.21686 0.94884 1.02335 0.98125 1.20374 0.97355 0.91807 0.95623 0.89489 1.22366 0.93955 0.97465 1.01620 1.21003 0.97212 0.91658 1.01757 1.20552 0.95183 0.93980 1.00942 1.20467 0.98854 0.91766 1.02731 1.21008 0.93103 0.98885 1.00882 1.21161 0.96216 0.96208 1.00483 1.21241 1.00823 0.91718 0.96041 1.20334 0.93114 0.94786 1.00477 0.92901 0.93444 0.91313 0.93067 0.92892 0.92715 0.94253 0.96846 0.93704 0.93396 0.93111 0.77185 0.89006 0.89093 0.90844 0.90520 0.91140 0.90530 0.86964 0.86465 0.86117 0.83846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.60 37.16 0.32 -1.68 16 2 C -0.09 -1.47 0.83 -152.22 -0.13 -1.60 16 3 C -0.13 -1.64 8.35 37.16 0.31 -1.33 16 4 C 0.14 2.86 6.15 -2.53 -0.02 2.84 16 5 N -0.60 -15.08 3.38 -170.07 -0.58 -15.66 16 6 C -0.23 -6.44 10.28 -15.06 -0.15 -6.60 16 7 H 0.08 2.03 7.83 -52.48 -0.41 1.61 16 8 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 9 N -0.92 -27.42 10.31 55.49 0.57 -26.85 16 10 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 C 0.18 4.35 4.72 -3.07 -0.01 4.33 16 15 C 0.13 2.36 2.52 -65.96 -0.17 2.20 16 16 H 0.09 1.67 7.61 -51.93 -0.40 1.27 16 17 N -0.71 -11.51 4.56 -51.90 -0.24 -11.75 16 18 C 0.51 8.37 7.60 -10.99 -0.08 8.29 16 19 O -0.54 -10.48 12.13 5.56 0.07 -10.41 16 20 C -0.13 -1.59 5.09 -27.88 -0.14 -1.73 16 21 C -0.03 -0.41 2.50 -90.74 -0.23 -0.64 16 22 H 0.09 1.15 7.91 -51.93 -0.41 0.74 16 23 C -0.12 -1.09 6.60 -25.33 -0.17 -1.26 16 24 C -0.08 -0.82 6.76 -26.85 -0.18 -1.00 16 25 C -0.11 -1.47 6.14 -104.20 -0.64 -2.11 16 26 C -0.12 -1.66 10.04 -39.54 -0.40 -2.05 16 27 C -0.12 -1.77 10.05 -39.62 -0.40 -2.16 16 28 C -0.12 -2.02 10.05 -39.62 -0.40 -2.42 16 29 C -0.08 -1.41 9.06 -39.53 -0.36 -1.77 16 30 C -0.09 -1.33 5.16 -104.20 -0.54 -1.87 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 1.30 7.81 -51.93 -0.41 0.90 16 34 H 0.05 0.59 6.18 -51.93 -0.32 0.27 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.04 0.77 8.05 -51.93 -0.42 0.36 16 38 H 0.01 0.27 8.04 -51.93 -0.42 -0.15 16 39 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.05 1.36 7.41 -51.93 -0.38 0.98 16 41 H 0.05 1.42 7.37 -51.93 -0.38 1.04 16 42 H 0.39 5.50 6.82 -40.82 -0.28 5.22 16 43 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 44 H 0.09 1.12 8.13 -51.94 -0.42 0.70 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.08 0.56 7.86 -51.93 -0.41 0.16 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 50 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 51 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 52 H 0.14 2.78 5.71 -52.48 -0.30 2.48 16 LS Contribution 401.53 15.07 6.05 6.05 Total: -1.00 -32.49 401.53 -11.36 -43.85 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -8.74 Total: 8.17 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -3.47 Total: -10.80 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.24 Total: -54.26 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.07 Total: -10.41 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.49 -11.36 -43.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977375465.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.842 kcal (2) G-P(sol) polarization free energy of solvation -32.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds