Wall clock time and date at job start Wed Apr 1 2020 02:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 110.91691 * 2 1 4 4 C 1.54914 * 111.00263 * 123.89858 * 2 1 3 5 5 N 1.47426 * 104.82992 * 81.06932 * 4 2 1 6 6 C 1.36936 * 125.64583 * 204.09666 * 5 4 2 7 7 H 1.08004 * 120.00261 * 0.02562 * 6 5 4 8 8 C 1.38814 * 120.00145 * 180.02562 * 6 5 4 9 9 N 1.31617 * 119.99550 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00112 * 179.97438 * 8 6 5 11 11 H 1.48492 * 109.47084 * 60.00066 * 10 8 6 12 12 H 1.48498 * 109.46831 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47190 * 299.99852 * 10 8 6 14 14 C 1.47018 * 108.70517 * 24.12623 * 5 4 2 15 15 C 1.54325 * 107.40412 * 358.86539 * 14 5 4 16 16 H 1.09002 * 110.72265 * 219.52294 * 15 14 5 17 17 N 1.46501 * 110.72113 * 96.24493 * 15 14 5 18 18 C 1.34773 * 119.99782 * 86.45299 * 17 15 14 19 19 O 1.21280 * 120.00408 * 0.02562 * 18 17 15 20 20 C 1.50700 * 119.99682 * 179.97438 * 18 17 15 21 21 C 1.50700 * 109.46727 * 180.02562 * 20 18 17 22 22 C 1.38250 * 120.03622 * 90.00382 * 21 20 18 23 23 C 1.38102 * 119.94020 * 179.97438 * 22 21 20 24 24 C 1.38498 * 120.21463 * 359.97438 * 23 22 21 25 25 C 1.38218 * 119.84585 * 0.02562 * 24 23 22 26 26 C 1.38102 * 120.03264 * 269.72302 * 21 20 18 27 27 C 1.51371 * 109.75573 * 179.97438 * 25 24 23 28 28 C 1.54342 * 105.17169 * 17.18811 * 27 25 24 29 29 C 1.51367 * 130.39550 * 180.02562 * 24 23 22 30 30 H 1.08998 * 109.47124 * 297.54972 * 1 2 3 31 31 H 1.09000 * 109.46711 * 57.55324 * 1 2 3 32 32 H 1.08996 * 109.47179 * 177.55223 * 1 2 3 33 33 H 1.08997 * 109.47294 * 182.44461 * 3 2 1 34 34 H 1.08997 * 109.47279 * 302.45141 * 3 2 1 35 35 H 1.09006 * 109.47100 * 62.44935 * 3 2 1 36 36 H 1.08999 * 110.37121 * 322.22667 * 4 2 1 37 37 H 1.09003 * 110.36718 * 199.90572 * 4 2 1 38 38 H 0.97004 * 119.99606 * 179.97438 * 9 8 6 39 39 H 1.09002 * 109.88241 * 118.36067 * 14 5 4 40 40 H 1.09000 * 109.88049 * 239.37196 * 14 5 4 41 41 H 0.97002 * 119.99754 * 266.45742 * 17 15 14 42 42 H 1.09000 * 109.47622 * 300.00278 * 20 18 17 43 43 H 1.08989 * 109.47257 * 60.00481 * 20 18 17 44 44 H 1.08003 * 120.02973 * 359.97438 * 22 21 20 45 45 H 1.08004 * 119.89565 * 179.97438 * 23 22 21 46 46 H 1.07998 * 119.89441 * 0.02671 * 26 21 20 47 47 H 1.09001 * 110.30187 * 136.11872 * 27 25 24 48 48 H 1.09000 * 110.30035 * 258.26360 * 27 25 24 49 49 H 1.08999 * 110.81997 * 91.88248 * 28 27 25 50 50 H 1.08997 * 110.82007 * 215.22605 * 28 27 25 51 51 H 1.09004 * 110.29843 * 281.74274 * 29 24 23 52 52 H 1.08997 * 110.30486 * 43.88511 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0852 -0.8066 1.2004 5 7 2.0139 -2.2159 0.7734 6 6 1.9460 -3.2999 1.6073 7 1 1.9411 -3.1582 2.6780 8 6 1.8833 -4.5810 1.0765 9 7 1.8897 -4.7538 -0.2283 10 14 1.7913 -6.0599 2.2141 11 1 0.5729 -5.9608 3.0570 12 1 1.7344 -7.3038 1.4050 13 1 2.9942 -6.0906 3.0843 14 6 2.0286 -2.2646 -0.6959 15 6 2.0842 -0.8090 -1.2055 16 1 1.4491 -0.6828 -2.0824 17 7 3.4640 -0.4161 -1.5023 18 6 3.9940 -0.6792 -2.7132 19 8 3.3285 -1.2408 -3.5574 20 6 5.4131 -0.2745 -3.0186 21 6 5.7586 -0.6796 -4.4284 22 6 5.5292 0.1938 -5.4753 23 6 5.8470 -0.1792 -6.7664 24 6 6.3957 -1.4260 -7.0166 25 6 6.6250 -2.2992 -5.9700 26 6 6.3100 -1.9214 -4.6753 27 6 7.2244 -3.5849 -6.4983 28 6 7.7397 -3.2395 -7.9115 29 6 6.8258 -2.0649 -8.3197 30 1 -0.3633 0.4753 0.9111 31 1 -0.3633 0.5514 -0.8673 32 1 -0.3633 -1.0267 -0.0439 33 1 3.1650 1.4020 -0.0438 34 1 1.6909 1.9654 -0.8672 35 1 1.7619 1.9383 0.9112 36 1 1.4672 -0.6461 2.0838 37 1 3.1182 -0.5233 1.4026 38 1 1.8463 -5.6490 -0.5992 39 1 2.9064 -2.8117 -1.0399 40 1 1.1232 -2.7504 -1.0597 41 1 3.9961 0.0333 -0.8271 42 1 5.5128 0.8062 -2.9167 43 1 6.0899 -0.7690 -2.3220 44 1 5.1018 1.1670 -5.2835 45 1 5.6671 0.5035 -7.5837 46 1 6.4927 -2.6016 -3.8566 47 1 8.0495 -3.9067 -5.8628 48 1 6.4627 -4.3627 -6.5531 49 1 8.7827 -2.9248 -7.8774 50 1 7.6141 -4.0855 -8.5872 51 1 5.9570 -2.4341 -8.8647 52 1 7.3783 -1.3488 -8.9278 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977573418.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:31 Heat of formation + Delta-G solvation = 3.121759 kcal Electronic energy + Delta-G solvation = -30241.459332 eV Core-core repulsion = 26398.629885 eV Total energy + Delta-G solvation = -3842.829448 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.28376 -39.54072 -37.91917 -35.88203 -33.82340 -32.93871 -31.98919 -30.69873 -30.52865 -28.31645 -27.70802 -26.91621 -25.98398 -25.58489 -23.37186 -22.53820 -20.94441 -20.85489 -20.05185 -19.62238 -18.61652 -16.81004 -16.55655 -16.23247 -15.90648 -15.66892 -15.21879 -14.78726 -14.68374 -14.15284 -13.96494 -13.84967 -13.59193 -13.25405 -13.18307 -13.05014 -12.92291 -12.51097 -12.35318 -12.16617 -11.99383 -11.82215 -11.67640 -11.63714 -11.36845 -11.30529 -11.19909 -11.05040 -10.95566 -10.92121 -10.74747 -10.68853 -10.36333 -10.21807 -9.96143 -9.85712 -9.61536 -9.41402 -8.65909 -8.59563 -8.36904 -8.30769 -6.79501 -5.65655 -3.00784 1.38872 1.50235 3.10409 3.42069 3.46251 3.48357 3.53981 3.95212 4.33163 4.50352 4.52474 4.77323 4.85663 4.96012 4.98608 5.06535 5.18594 5.26435 5.30696 5.32239 5.41186 5.51175 5.55505 5.55976 5.56822 5.62060 5.66622 5.68260 5.73592 5.82917 5.83705 5.92011 6.02635 6.05305 6.13065 6.17642 6.22672 6.24734 6.26970 6.42311 6.46897 6.60751 6.63137 6.67500 6.69947 6.70803 6.80301 6.99693 7.08656 7.58885 7.69505 7.86891 8.02075 8.29471 8.72742 9.25218 9.86028 10.51730 11.44506 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011117 B = 0.002994 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.972864 B = 9348.868045 C =11316.345944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.089 4.089 3 C -0.131 4.131 4 C 0.144 3.856 5 N -0.602 5.602 6 C -0.231 4.231 7 H 0.076 0.924 8 C -0.007 4.007 9 N -0.917 5.917 10 Si 0.910 3.090 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.176 3.824 15 C 0.126 3.874 16 H 0.085 0.915 17 N -0.713 5.713 18 C 0.512 3.488 19 O -0.531 6.531 20 C -0.103 4.103 21 C -0.057 4.057 22 C -0.106 4.106 23 C -0.108 4.108 24 C -0.104 4.104 25 C -0.096 4.096 26 C -0.089 4.089 27 C -0.083 4.083 28 C -0.120 4.120 29 C -0.080 4.080 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.040 0.960 37 H 0.015 0.985 38 H 0.253 0.747 39 H 0.047 0.953 40 H 0.052 0.948 41 H 0.394 0.606 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.120 0.880 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.073 0.927 48 H 0.081 0.919 49 H 0.070 0.930 50 H 0.074 0.926 51 H 0.078 0.922 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.089 12.327 -11.078 19.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C -0.189 4.189 4 C 0.018 3.982 5 N -0.329 5.329 6 C -0.359 4.359 7 H 0.094 0.906 8 C -0.203 4.203 9 N -0.564 5.564 10 Si 0.741 3.259 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.213 1.213 14 C 0.051 3.949 15 C 0.021 3.979 16 H 0.103 0.897 17 N -0.365 5.365 18 C 0.297 3.703 19 O -0.407 6.407 20 C -0.143 4.143 21 C -0.058 4.058 22 C -0.124 4.124 23 C -0.126 4.126 24 C -0.104 4.104 25 C -0.096 4.096 26 C -0.107 4.107 27 C -0.120 4.120 28 C -0.157 4.157 29 C -0.117 4.117 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.032 0.968 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.229 0.771 42 H 0.116 0.884 43 H 0.119 0.881 44 H 0.138 0.862 45 H 0.135 0.865 46 H 0.137 0.863 47 H 0.092 0.908 48 H 0.099 0.901 49 H 0.089 0.911 50 H 0.093 0.907 51 H 0.096 0.904 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.583 11.653 -11.721 19.105 hybrid contribution 0.125 -0.665 1.064 1.261 sum 9.708 10.987 -10.656 18.125 Atomic orbital electron populations 1.21593 0.93395 1.02824 1.00502 1.22051 0.96302 0.94089 0.96649 1.21678 1.00220 0.95633 1.01321 1.21620 0.96509 0.85834 0.94259 1.44426 1.86925 0.99668 1.01858 1.18964 1.44090 0.84017 0.88839 0.90598 1.24811 1.02237 0.97352 0.95930 1.69965 1.56474 1.20865 1.09125 0.86233 0.77824 0.82413 0.79461 1.21219 1.21646 1.21284 1.21499 1.01566 0.88670 0.83215 1.22463 0.81242 0.97452 0.96757 0.89689 1.46043 1.15136 1.60924 1.14359 1.20325 0.88423 0.79301 0.82216 1.90730 1.62118 1.41004 1.46821 1.20673 0.95331 1.03105 0.95154 1.19125 0.98346 0.94320 0.93961 1.20806 0.99884 0.99554 0.92162 1.20487 1.00052 0.95552 0.96543 1.20525 0.99888 0.94354 0.95639 1.20484 0.99795 0.96168 0.93166 1.20473 0.98862 0.95533 0.95875 1.21052 1.00097 0.95022 0.95869 1.22277 0.99248 0.97954 0.96244 1.21013 0.99297 0.96818 0.94608 0.92865 0.93435 0.91295 0.93029 0.92886 0.92676 0.94181 0.96759 0.93680 0.93446 0.93017 0.77094 0.88355 0.88123 0.86201 0.86537 0.86289 0.90806 0.90112 0.91135 0.90686 0.90391 0.91028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 8.60 37.16 0.32 -1.70 16 2 C -0.09 -1.48 0.83 -152.22 -0.13 -1.60 16 3 C -0.13 -1.65 8.35 37.16 0.31 -1.34 16 4 C 0.14 2.84 6.15 -2.53 -0.02 2.83 16 5 N -0.60 -15.08 3.38 -170.07 -0.58 -15.66 16 6 C -0.23 -6.40 10.28 -15.06 -0.15 -6.56 16 7 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 8 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 9 N -0.92 -27.59 10.31 55.49 0.57 -27.02 16 10 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 C 0.18 4.37 4.72 -3.07 -0.01 4.35 16 15 C 0.13 2.41 2.52 -65.96 -0.17 2.24 16 16 H 0.09 1.72 7.61 -51.93 -0.40 1.32 16 17 N -0.71 -11.68 4.55 -51.90 -0.24 -11.91 16 18 C 0.51 8.75 7.82 -10.99 -0.09 8.66 16 19 O -0.53 -11.50 15.76 5.56 0.09 -11.41 16 20 C -0.10 -1.30 5.83 -29.03 -0.17 -1.47 16 21 C -0.06 -0.80 4.37 -104.67 -0.46 -1.26 16 22 C -0.11 -1.37 9.70 -39.63 -0.38 -1.76 16 23 C -0.11 -1.33 10.04 -39.54 -0.40 -1.73 16 24 C -0.10 -1.30 6.14 -104.21 -0.64 -1.94 16 25 C -0.10 -1.29 6.14 -104.20 -0.64 -1.93 16 26 C -0.09 -1.30 9.69 -39.54 -0.38 -1.69 16 27 C -0.08 -0.90 6.77 -26.85 -0.18 -1.08 16 28 C -0.12 -1.03 7.08 -25.34 -0.18 -1.21 16 29 C -0.08 -0.77 6.77 -26.86 -0.18 -0.95 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 1.31 7.81 -51.93 -0.41 0.91 16 33 H 0.05 0.59 6.17 -51.93 -0.32 0.27 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.04 0.78 8.05 -51.93 -0.42 0.36 16 37 H 0.01 0.28 8.04 -51.93 -0.42 -0.14 16 38 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.05 1.36 7.41 -51.93 -0.38 0.97 16 40 H 0.05 1.46 7.37 -51.93 -0.38 1.08 16 41 H 0.39 5.43 6.82 -40.82 -0.28 5.15 16 42 H 0.10 0.93 8.09 -51.93 -0.42 0.51 16 43 H 0.10 1.14 8.08 -51.94 -0.42 0.72 16 44 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 45 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 46 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 50 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 51 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 52 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 409.36 15.07 6.17 6.17 Total: -1.00 -33.95 409.36 -11.53 -45.48 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -8.88 Total: 5.44 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -3.64 Total: -8.42 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.24 Total: -54.59 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.95 -11.53 -45.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977573418.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.602 kcal (2) G-P(sol) polarization free energy of solvation -33.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds