Wall clock time and date at job start Wed Apr 1 2020 02:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 110.91691 * 2 1 4 4 C 1.54914 * 111.00263 * 123.89858 * 2 1 3 5 5 N 1.47426 * 104.82992 * 81.06932 * 4 2 1 6 6 C 1.36936 * 125.64583 * 204.09666 * 5 4 2 7 7 H 1.08004 * 120.00261 * 0.02562 * 6 5 4 8 8 C 1.38814 * 120.00145 * 180.02562 * 6 5 4 9 9 N 1.31617 * 119.99550 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00112 * 179.97438 * 8 6 5 11 11 H 1.48492 * 109.47084 * 60.00066 * 10 8 6 12 12 H 1.48498 * 109.46831 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47190 * 299.99852 * 10 8 6 14 14 C 1.47018 * 108.70517 * 24.12623 * 5 4 2 15 15 C 1.54325 * 107.40412 * 358.86539 * 14 5 4 16 16 H 1.09002 * 110.72265 * 219.52294 * 15 14 5 17 17 N 1.46501 * 110.72113 * 96.24493 * 15 14 5 18 18 C 1.34773 * 119.99782 * 86.45299 * 17 15 14 19 19 O 1.21280 * 120.00408 * 0.02562 * 18 17 15 20 20 C 1.50700 * 119.99682 * 179.97438 * 18 17 15 21 21 C 1.50700 * 109.46727 * 180.02562 * 20 18 17 22 22 C 1.38250 * 120.03622 * 90.00382 * 21 20 18 23 23 C 1.38102 * 119.94020 * 179.97438 * 22 21 20 24 24 C 1.38498 * 120.21463 * 359.97438 * 23 22 21 25 25 C 1.38218 * 119.84585 * 0.02562 * 24 23 22 26 26 C 1.38102 * 120.03264 * 269.72302 * 21 20 18 27 27 C 1.51371 * 109.75573 * 179.97438 * 25 24 23 28 28 C 1.54342 * 105.17169 * 17.18811 * 27 25 24 29 29 C 1.51367 * 130.39550 * 180.02562 * 24 23 22 30 30 H 1.08998 * 109.47124 * 297.54972 * 1 2 3 31 31 H 1.09000 * 109.46711 * 57.55324 * 1 2 3 32 32 H 1.08996 * 109.47179 * 177.55223 * 1 2 3 33 33 H 1.08997 * 109.47294 * 182.44461 * 3 2 1 34 34 H 1.08997 * 109.47279 * 302.45141 * 3 2 1 35 35 H 1.09006 * 109.47100 * 62.44935 * 3 2 1 36 36 H 1.08999 * 110.37121 * 322.22667 * 4 2 1 37 37 H 1.09003 * 110.36718 * 199.90572 * 4 2 1 38 38 H 0.97004 * 119.99606 * 179.97438 * 9 8 6 39 39 H 1.09002 * 109.88241 * 118.36067 * 14 5 4 40 40 H 1.09000 * 109.88049 * 239.37196 * 14 5 4 41 41 H 0.97002 * 119.99754 * 266.45742 * 17 15 14 42 42 H 1.09000 * 109.47622 * 300.00278 * 20 18 17 43 43 H 1.08989 * 109.47257 * 60.00481 * 20 18 17 44 44 H 1.08003 * 120.02973 * 359.97438 * 22 21 20 45 45 H 1.08004 * 119.89565 * 179.97438 * 23 22 21 46 46 H 1.07998 * 119.89441 * 0.02671 * 26 21 20 47 47 H 1.09001 * 110.30187 * 136.11872 * 27 25 24 48 48 H 1.09000 * 110.30035 * 258.26360 * 27 25 24 49 49 H 1.08999 * 110.81997 * 91.88248 * 28 27 25 50 50 H 1.08997 * 110.82007 * 215.22605 * 28 27 25 51 51 H 1.09004 * 110.29843 * 281.74274 * 29 24 23 52 52 H 1.08997 * 110.30486 * 43.88511 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0852 -0.8066 1.2004 5 7 2.0139 -2.2159 0.7734 6 6 1.9460 -3.2999 1.6073 7 1 1.9411 -3.1582 2.6780 8 6 1.8833 -4.5810 1.0765 9 7 1.8897 -4.7538 -0.2283 10 14 1.7913 -6.0599 2.2141 11 1 0.5729 -5.9608 3.0570 12 1 1.7344 -7.3038 1.4050 13 1 2.9942 -6.0906 3.0843 14 6 2.0286 -2.2646 -0.6959 15 6 2.0842 -0.8090 -1.2055 16 1 1.4491 -0.6828 -2.0824 17 7 3.4640 -0.4161 -1.5023 18 6 3.9940 -0.6792 -2.7132 19 8 3.3285 -1.2408 -3.5574 20 6 5.4131 -0.2745 -3.0186 21 6 5.7586 -0.6796 -4.4284 22 6 5.5292 0.1938 -5.4753 23 6 5.8470 -0.1792 -6.7664 24 6 6.3957 -1.4260 -7.0166 25 6 6.6250 -2.2992 -5.9700 26 6 6.3100 -1.9214 -4.6753 27 6 7.2244 -3.5849 -6.4983 28 6 7.7397 -3.2395 -7.9115 29 6 6.8258 -2.0649 -8.3197 30 1 -0.3633 0.4753 0.9111 31 1 -0.3633 0.5514 -0.8673 32 1 -0.3633 -1.0267 -0.0439 33 1 3.1650 1.4020 -0.0438 34 1 1.6909 1.9654 -0.8672 35 1 1.7619 1.9383 0.9112 36 1 1.4672 -0.6461 2.0838 37 1 3.1182 -0.5233 1.4026 38 1 1.8463 -5.6490 -0.5992 39 1 2.9064 -2.8117 -1.0399 40 1 1.1232 -2.7504 -1.0597 41 1 3.9961 0.0333 -0.8271 42 1 5.5128 0.8062 -2.9167 43 1 6.0899 -0.7690 -2.3220 44 1 5.1018 1.1670 -5.2835 45 1 5.6671 0.5035 -7.5837 46 1 6.4927 -2.6016 -3.8566 47 1 8.0495 -3.9067 -5.8628 48 1 6.4627 -4.3627 -6.5531 49 1 8.7827 -2.9248 -7.8774 50 1 7.6141 -4.0855 -8.5872 51 1 5.9570 -2.4341 -8.8647 52 1 7.3783 -1.3488 -8.9278 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977573418.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:46:30 Heat of formation + Delta-G solvation = -16.312214 kcal Electronic energy + Delta-G solvation = -30242.302053 eV Core-core repulsion = 26398.629885 eV Total energy + Delta-G solvation = -3843.672168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.43759 -40.81703 -39.39935 -36.83428 -35.67746 -34.45387 -32.97963 -32.60847 -31.54340 -29.84679 -28.72891 -28.08553 -27.48407 -27.01839 -25.04892 -23.51279 -22.47334 -21.67192 -21.58157 -20.89300 -20.03018 -18.68438 -18.03474 -17.43169 -17.04058 -16.74100 -16.60149 -16.16573 -15.82983 -15.67579 -15.54061 -15.25734 -15.04066 -14.69672 -14.16305 -14.13631 -13.82941 -13.74756 -13.72744 -13.45402 -13.32938 -13.16064 -13.03278 -12.89510 -12.79666 -12.65741 -12.57969 -12.51233 -12.18893 -12.12854 -12.03754 -11.84686 -11.72397 -11.71245 -11.61401 -11.49079 -11.30296 -10.89399 -10.70817 -9.94107 -9.66252 -9.27781 -8.89186 -7.83439 -5.20463 0.39265 0.49845 1.42342 1.46092 1.52610 1.74128 2.28169 2.48633 2.87620 3.34243 3.46311 3.50924 3.67056 3.73103 3.77850 3.97236 4.06954 4.11270 4.12443 4.15120 4.17165 4.33504 4.41084 4.51631 4.55460 4.58859 4.62142 4.72149 4.73941 4.80246 4.86028 4.89194 4.90707 4.93780 4.96480 5.06316 5.07495 5.14888 5.18158 5.23699 5.27971 5.33761 5.34988 5.37467 5.45425 5.51090 5.57504 5.67103 5.72739 5.73209 5.78930 6.13387 6.17360 6.67277 7.07751 7.39079 7.78214 8.42485 9.25110 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011117 B = 0.002994 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.972864 B = 9348.868045 C =11316.345944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.074 4.074 3 C -0.123 4.123 4 C 0.137 3.863 5 N -0.620 5.620 6 C -0.237 4.237 7 H 0.087 0.913 8 C -0.071 4.071 9 N -0.953 5.953 10 Si 0.978 3.022 11 H -0.275 1.275 12 H -0.300 1.300 13 H -0.275 1.275 14 C 0.195 3.805 15 C 0.140 3.860 16 H 0.072 0.928 17 N -0.701 5.701 18 C 0.508 3.492 19 O -0.584 6.584 20 C -0.091 4.091 21 C -0.076 4.076 22 C -0.114 4.114 23 C -0.116 4.116 24 C -0.114 4.114 25 C -0.118 4.118 26 C -0.118 4.118 27 C -0.088 4.088 28 C -0.112 4.112 29 C -0.080 4.080 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.026 0.974 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.033 0.967 38 H 0.242 0.758 39 H -0.003 1.003 40 H 0.000 1.000 41 H 0.411 0.589 42 H 0.141 0.859 43 H 0.114 0.886 44 H 0.141 0.859 45 H 0.142 0.858 46 H 0.107 0.893 47 H 0.079 0.921 48 H 0.071 0.929 49 H 0.082 0.918 50 H 0.092 0.908 51 H 0.081 0.919 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.292 15.392 -10.679 21.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.075 4.075 3 C -0.181 4.181 4 C 0.013 3.987 5 N -0.346 5.346 6 C -0.366 4.366 7 H 0.105 0.895 8 C -0.264 4.264 9 N -0.603 5.603 10 Si 0.806 3.194 11 H -0.201 1.201 12 H -0.227 1.227 13 H -0.201 1.201 14 C 0.068 3.932 15 C 0.033 3.967 16 H 0.090 0.910 17 N -0.354 5.354 18 C 0.296 3.704 19 O -0.463 6.463 20 C -0.130 4.130 21 C -0.076 4.076 22 C -0.132 4.132 23 C -0.134 4.134 24 C -0.114 4.114 25 C -0.118 4.118 26 C -0.137 4.137 27 C -0.125 4.125 28 C -0.149 4.149 29 C -0.116 4.116 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.016 0.984 40 H 0.018 0.982 41 H 0.249 0.751 42 H 0.159 0.841 43 H 0.132 0.868 44 H 0.159 0.841 45 H 0.160 0.840 46 H 0.125 0.875 47 H 0.097 0.903 48 H 0.090 0.910 49 H 0.101 0.899 50 H 0.111 0.889 51 H 0.099 0.901 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.815 14.782 -11.264 21.503 hybrid contribution -0.274 -1.619 0.953 1.898 sum 10.541 13.164 -10.311 19.766 Atomic orbital electron populations 1.21595 0.93132 1.00757 1.02689 1.22022 0.96496 0.96016 0.92967 1.21656 1.01112 0.92148 1.03183 1.21912 0.97769 0.83240 0.95807 1.44677 1.86591 1.01648 1.01711 1.19443 1.42327 0.85064 0.89771 0.89503 1.25697 1.02977 1.00434 0.97257 1.70256 1.58435 1.20422 1.11156 0.85160 0.78386 0.78354 0.77506 1.20055 1.22687 1.20056 1.21052 0.96795 0.91720 0.83617 1.22026 0.83031 0.94409 0.97212 0.91030 1.45878 1.14170 1.60501 1.14839 1.21179 0.89826 0.77898 0.81500 1.90709 1.63843 1.43273 1.48484 1.20693 0.91811 1.05737 0.94805 1.19350 0.98785 0.94435 0.95041 1.21134 0.99597 1.00294 0.92208 1.20880 0.99337 0.95988 0.97191 1.20994 0.99270 0.94377 0.96743 1.20880 1.00144 0.97628 0.93197 1.20650 1.00465 0.96168 0.96378 1.21148 0.99984 0.93803 0.97596 1.22296 0.99591 0.98299 0.94738 1.21098 0.99803 0.97346 0.93392 0.90526 0.91383 0.95494 0.91485 0.91487 0.90430 0.93420 0.94912 0.94904 0.98439 0.98230 0.75094 0.84127 0.86832 0.84125 0.84022 0.87529 0.90290 0.91032 0.89940 0.88945 0.90063 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.84 8.60 71.98 0.62 -3.22 16 2 C -0.07 -2.30 0.83 -50.70 -0.04 -2.34 16 3 C -0.12 -2.57 8.35 71.98 0.60 -1.97 16 4 C 0.14 5.22 6.15 86.86 0.53 5.76 16 5 N -0.62 -31.85 3.38 -691.97 -2.34 -34.19 16 6 C -0.24 -13.42 10.28 84.03 0.86 -12.56 16 7 H 0.09 4.61 7.83 -2.91 -0.02 4.59 16 8 C -0.07 -4.19 5.49 84.86 0.47 -3.73 16 9 N -0.95 -61.10 10.31 21.65 0.22 -60.87 16 10 Si 0.98 47.30 29.55 68.60 2.03 49.32 16 11 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 13 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 14 C 0.19 10.28 4.72 86.73 0.41 10.69 16 15 C 0.14 5.44 2.52 46.27 0.12 5.55 16 16 H 0.07 3.01 7.61 -2.39 -0.02 2.99 16 17 N -0.70 -22.51 4.55 -436.50 -1.99 -24.50 16 18 C 0.51 17.45 7.82 87.66 0.69 18.14 16 19 O -0.58 -26.44 15.76 -3.03 -0.05 -26.49 16 20 C -0.09 -2.20 5.83 29.10 0.17 -2.03 16 21 C -0.08 -2.12 4.37 -19.89 -0.09 -2.21 16 22 C -0.11 -2.84 9.70 22.24 0.22 -2.62 16 23 C -0.12 -2.72 10.04 22.30 0.22 -2.49 16 24 C -0.11 -2.78 6.14 -19.59 -0.12 -2.90 16 25 C -0.12 -3.27 6.14 -19.59 -0.12 -3.40 16 26 C -0.12 -3.62 9.69 22.30 0.22 -3.41 16 27 C -0.09 -1.94 6.77 30.52 0.21 -1.74 16 28 C -0.11 -1.77 7.08 31.50 0.22 -1.54 16 29 C -0.08 -1.39 6.77 30.51 0.21 -1.18 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.03 1.04 7.81 -2.39 -0.02 1.02 16 33 H 0.07 1.20 6.17 -2.39 -0.01 1.19 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.05 1.76 8.05 -2.39 -0.02 1.74 16 37 H 0.03 1.16 8.04 -2.39 -0.02 1.14 16 38 H 0.24 15.32 8.31 -92.71 -0.77 14.54 16 39 H 0.00 -0.16 7.41 -2.39 -0.02 -0.18 16 40 H 0.00 -0.03 7.37 -2.39 -0.02 -0.05 16 41 H 0.41 10.31 6.82 -92.71 -0.63 9.67 16 42 H 0.14 2.17 8.09 -2.39 -0.02 2.15 16 43 H 0.11 2.45 8.08 -2.39 -0.02 2.43 16 44 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 45 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 46 H 0.11 3.33 8.06 -2.91 -0.02 3.31 16 47 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 52 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -81.40 409.36 3.53 -77.87 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.27 Total: 26.04 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 5.39 Total: -7.19 kcal Atomic # 7 Polarization: -115.45 SS G_CDS: -4.10 Total: -119.56 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.05 Total: -26.49 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.32 kcal Total: -81.40 3.53 -77.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977573418.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.562 kcal (2) G-P(sol) polarization free energy of solvation -81.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds