Wall clock time and date at job start Wed Apr 1 2020 02:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.46964 * 2 1 4 4 C 1.38384 * 119.85335 * 264.97644 * 3 2 1 5 5 C 1.37935 * 120.14687 * 179.76019 * 4 3 2 6 6 C 1.39601 * 119.85000 * 0.54068 * 5 4 3 7 7 C 1.47841 * 120.14174 * 179.74506 * 6 5 4 8 8 O 1.21550 * 120.00016 * 179.71766 * 7 6 5 9 9 N 1.34778 * 120.00368 * 359.71552 * 7 6 5 10 10 C 1.46500 * 120.00351 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47383 * 180.02562 * 10 9 7 12 12 H 1.09005 * 115.49398 * 29.62097 * 11 10 9 13 13 C 1.57118 * 118.27527 * 243.46598 * 11 10 9 14 14 H 1.09000 * 121.24099 * 3.77382 * 13 11 10 15 15 C 1.54389 * 118.20103 * 162.01473 * 13 11 10 16 16 N 1.48143 * 104.61766 * 86.20035 * 15 13 11 17 17 C 1.36940 * 127.84087 * 140.41061 * 16 15 13 18 18 H 1.07991 * 120.00525 * 195.61734 * 17 16 15 19 19 C 1.38817 * 119.99645 * 15.61941 * 17 16 15 20 20 N 1.31614 * 120.00197 * 9.10299 * 19 17 16 21 21 Si 1.86804 * 119.99863 * 189.11275 * 19 17 16 22 22 H 1.48500 * 109.47330 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47314 * 119.99848 * 21 19 17 24 24 H 1.48501 * 109.46496 * 239.99717 * 21 19 17 25 25 C 1.48142 * 104.32397 * 320.41327 * 16 15 13 26 26 C 1.52999 * 117.44460 * 175.00229 * 11 10 9 27 27 H 1.08996 * 119.53548 * 355.88166 * 26 11 10 28 28 C 1.39550 * 119.71231 * 359.46012 * 6 5 4 29 29 C 1.37982 * 119.85331 * 0.25845 * 28 6 5 30 30 C 1.50697 * 119.92906 * 179.97438 * 29 28 6 31 31 C 1.53001 * 109.47113 * 265.00245 * 30 29 28 32 32 H 1.09003 * 109.46791 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47500 * 300.00133 * 1 2 3 34 34 H 1.08999 * 109.47142 * 60.00351 * 1 2 3 35 35 H 1.08998 * 109.47500 * 239.99867 * 2 1 3 36 36 H 1.09002 * 109.47640 * 119.99564 * 2 1 3 37 37 H 1.08006 * 119.92649 * 0.04526 * 4 3 2 38 38 H 1.08006 * 120.07588 * 180.27360 * 5 4 3 39 39 H 0.97001 * 120.00018 * 0.02562 * 9 7 6 40 40 H 1.09008 * 109.46658 * 60.00118 * 10 9 7 41 41 H 1.08995 * 109.47316 * 300.00598 * 10 9 7 42 42 H 1.09004 * 110.40988 * 327.41485 * 15 13 11 43 43 H 1.09001 * 110.50556 * 205.03262 * 15 13 11 44 44 H 0.96999 * 120.00326 * 179.97438 * 20 19 17 45 45 H 1.08997 * 110.40651 * 280.79640 * 25 16 15 46 46 H 1.08999 * 110.40877 * 158.37029 * 25 16 15 47 47 H 1.08001 * 120.07394 * 180.27707 * 28 6 5 48 48 H 1.09001 * 109.47137 * 25.00056 * 30 29 28 49 49 H 1.09003 * 109.47157 * 145.00605 * 30 29 28 50 50 H 1.09001 * 109.47015 * 180.02562 * 31 30 29 51 51 H 1.09002 * 109.47331 * 299.99520 * 31 30 29 52 52 H 1.08996 * 109.47436 * 59.99949 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3609 2.0353 -1.1956 5 6 2.8166 3.3372 -1.2031 6 6 2.9565 4.0313 0.0000 7 6 3.4497 5.4250 0.0000 8 8 3.5657 6.0287 1.0486 9 7 3.7707 6.0263 -1.1627 10 6 4.2599 7.4072 -1.1627 11 6 4.5481 7.8462 -2.5997 12 1 3.9339 7.3742 -3.3667 13 6 6.0286 8.2032 -2.9861 14 1 6.8436 8.0840 -2.2722 15 6 6.4052 8.2324 -4.4831 16 7 6.0572 9.6014 -4.9295 17 6 6.7551 10.4077 -5.7886 18 1 6.5341 11.4636 -5.8379 19 6 7.7467 9.8677 -6.5961 20 7 7.8965 8.5623 -6.6705 21 14 8.8688 10.9940 -7.5770 22 1 8.4964 12.4087 -7.3214 23 1 10.2778 10.7704 -7.1648 24 1 8.7237 10.6982 -9.0250 25 6 4.7828 9.9003 -4.2358 26 6 4.9589 9.3030 -2.8231 27 1 4.9688 9.9938 -1.9800 28 6 2.6233 3.4058 1.2022 29 6 2.1631 2.1050 1.1952 30 6 1.8033 1.4278 2.4924 31 6 2.9999 0.6163 2.9931 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.8933 -0.5138 -0.8899 36 1 1.8934 -0.5138 0.8900 37 1 2.2561 1.4957 -2.1254 38 1 3.0686 3.8171 -2.1373 39 1 3.6778 5.5447 -1.9996 40 1 5.1747 7.4685 -0.5732 41 1 3.5034 8.0607 -0.7284 42 1 5.8248 7.4934 -5.0355 43 1 7.4721 8.0503 -4.6120 44 1 8.5892 8.1849 -7.2351 45 1 3.9491 9.4219 -4.7496 46 1 4.6261 10.9773 -4.1762 47 1 2.7251 3.9389 2.1360 48 1 1.5391 2.1812 3.2346 49 1 0.9549 0.7626 2.3319 50 1 2.7395 0.1261 3.9312 51 1 3.2641 -0.1371 2.2511 52 1 3.8484 1.2814 3.1536 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979118242.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:37 Heat of formation + Delta-G solvation = 28.160450 kcal Electronic energy + Delta-G solvation = -28580.539671 eV Core-core repulsion = 24738.795982 eV Total energy + Delta-G solvation = -3841.743689 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 4.18 seconds Orbital eigenvalues (eV) -40.57709 -39.24366 -38.46469 -35.11607 -34.92950 -33.79290 -33.27072 -30.91297 -30.25134 -29.61390 -27.41335 -27.07917 -25.30080 -24.72502 -23.69702 -21.98534 -21.87937 -21.16299 -20.36049 -19.56311 -19.16974 -17.74375 -16.83679 -16.71814 -15.90528 -15.64698 -15.30210 -15.17643 -14.75841 -14.29237 -14.23657 -14.05203 -13.99503 -13.79652 -13.63306 -13.55450 -13.13446 -12.87026 -12.81660 -12.72087 -12.65690 -12.20422 -11.88099 -11.79431 -11.67579 -11.49933 -11.27701 -11.14219 -11.08899 -10.95015 -10.85598 -10.71425 -10.28512 -10.12362 -10.05082 -9.75694 -9.40647 -9.16848 -9.12518 -9.00082 -8.82574 -8.62546 -6.88248 -5.81772 -3.15886 0.60549 1.07965 2.70342 3.07428 3.36436 3.42718 3.45112 3.61612 4.05742 4.29255 4.35392 4.43876 4.50378 4.59233 4.66593 4.82897 4.87125 4.92223 4.96395 5.02498 5.08497 5.19981 5.25429 5.29514 5.35949 5.39271 5.42738 5.47996 5.52068 5.54146 5.60272 5.65887 5.75587 5.77137 5.79713 5.86341 5.91952 5.93954 5.94528 6.04234 6.13374 6.25154 6.29897 6.34942 6.54590 6.61832 6.65175 6.69846 6.91248 7.34395 7.45605 7.51875 7.70474 8.14322 8.19173 9.09438 9.72126 10.49196 11.32622 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020857 B = 0.001758 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.183863 B =15926.691992 C =16559.236883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.057 4.057 4 C -0.122 4.122 5 C -0.086 4.086 6 C -0.134 4.134 7 C 0.556 3.444 8 O -0.543 6.543 9 N -0.718 5.718 10 C 0.156 3.844 11 C -0.154 4.154 12 H 0.103 0.897 13 C -0.168 4.168 14 H 0.104 0.896 15 C 0.183 3.817 16 N -0.595 5.595 17 C -0.226 4.226 18 H 0.077 0.923 19 C -0.007 4.007 20 N -0.916 5.916 21 Si 0.913 3.087 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.152 3.848 26 C -0.161 4.161 27 H 0.103 0.897 28 C -0.056 4.056 29 C -0.090 4.090 30 C -0.088 4.088 31 C -0.149 4.149 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.402 0.598 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.022 0.978 43 H 0.090 0.910 44 H 0.254 0.746 45 H 0.024 0.976 46 H 0.050 0.950 47 H 0.134 0.866 48 H 0.073 0.927 49 H 0.076 0.924 50 H 0.058 0.942 51 H 0.057 0.943 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.486 -18.802 16.018 28.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.129 4.129 3 C -0.057 4.057 4 C -0.140 4.140 5 C -0.105 4.105 6 C -0.137 4.137 7 C 0.344 3.656 8 O -0.421 6.421 9 N -0.370 5.370 10 C 0.033 3.967 11 C -0.173 4.173 12 H 0.121 0.879 13 C -0.188 4.188 14 H 0.122 0.878 15 C 0.057 3.943 16 N -0.318 5.318 17 C -0.354 4.354 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.562 5.562 21 Si 0.743 3.257 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.217 1.217 25 C 0.026 3.974 26 C -0.181 4.181 27 H 0.121 0.879 28 C -0.074 4.074 29 C -0.090 4.090 30 C -0.125 4.125 31 C -0.206 4.206 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.237 0.763 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.040 0.960 43 H 0.108 0.892 44 H 0.064 0.936 45 H 0.042 0.958 46 H 0.069 0.931 47 H 0.152 0.848 48 H 0.091 0.909 49 H 0.095 0.905 50 H 0.077 0.923 51 H 0.076 0.924 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.182 -18.292 16.534 28.445 hybrid contribution 0.631 0.412 -1.045 1.288 sum -13.552 -17.880 15.489 27.263 Atomic orbital electron populations 1.21764 0.94470 1.01876 1.02432 1.20670 0.96407 0.92551 1.03299 1.19952 0.97050 0.96109 0.92585 1.20979 1.00415 0.94865 0.97787 1.21329 0.97380 0.94660 0.97112 1.19929 1.04885 0.94344 0.94514 1.18270 0.77528 0.86062 0.83783 1.90761 1.54033 1.65968 1.31364 1.45954 1.66602 1.15421 1.08986 1.20837 0.99317 0.81011 0.95513 1.23124 0.99261 0.99511 0.95384 0.87900 1.25018 0.89234 1.03097 1.01415 0.87787 1.21077 1.01530 0.86467 0.85221 1.45222 1.20467 1.14733 1.51403 1.19051 1.13341 0.90000 1.13036 0.90510 1.24902 1.00834 0.95915 0.98711 1.69902 1.34934 1.09183 1.42192 0.86041 0.80512 0.79702 0.79474 1.20340 1.21607 1.21691 1.21172 0.89887 0.97557 0.88773 1.23831 1.04398 0.89834 1.00056 0.87929 1.21127 0.94964 0.93618 0.97735 1.19694 1.00471 0.93908 0.94946 1.20605 0.98830 0.99394 0.93664 1.21779 0.97969 1.00026 1.00848 0.92233 0.92349 0.92379 0.90810 0.90386 0.85373 0.85418 0.76267 0.91231 0.91106 0.96004 0.89206 0.93617 0.95798 0.93110 0.84777 0.90853 0.90515 0.92279 0.92438 0.92332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.72 37.15 0.36 -0.40 16 2 C -0.09 -0.53 5.38 -27.89 -0.15 -0.68 16 3 C -0.06 -0.45 5.14 -104.53 -0.54 -0.99 16 4 C -0.12 -1.01 9.66 -39.64 -0.38 -1.39 16 5 C -0.09 -0.81 9.54 -39.18 -0.37 -1.18 16 6 C -0.13 -1.53 5.87 -104.97 -0.62 -2.15 16 7 C 0.56 7.67 7.77 -12.33 -0.10 7.58 16 8 O -0.54 -9.28 16.35 5.32 0.09 -9.19 16 9 N -0.72 -8.94 5.51 -61.25 -0.34 -9.28 16 10 C 0.16 2.15 5.98 -4.04 -0.02 2.13 16 11 C -0.15 -2.34 5.54 -88.39 -0.49 -2.83 16 12 H 0.10 1.54 8.04 -51.93 -0.42 1.12 16 13 C -0.17 -3.14 7.00 -86.98 -0.61 -3.75 16 14 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 15 C 0.18 4.34 5.73 -2.41 -0.01 4.32 16 16 N -0.59 -15.19 3.38 -168.87 -0.57 -15.76 16 17 C -0.23 -6.29 10.35 -15.06 -0.16 -6.45 16 18 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 19 C -0.01 -0.19 5.40 -17.43 -0.09 -0.28 16 20 N -0.92 -26.68 10.86 55.49 0.60 -26.08 16 21 Si 0.91 21.89 29.56 -169.99 -5.03 16.87 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 25 C 0.15 3.17 7.03 -2.41 -0.02 3.16 16 26 C -0.16 -2.83 6.71 -89.22 -0.60 -3.43 16 27 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 28 C -0.06 -0.60 9.22 -39.19 -0.36 -0.96 16 29 C -0.09 -0.78 5.13 -104.68 -0.54 -1.32 16 30 C -0.09 -0.57 5.38 -27.88 -0.15 -0.72 16 31 C -0.15 -0.90 9.72 37.16 0.36 -0.53 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.31 6.79 -51.93 -0.35 -0.04 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.37 8.05 -51.93 -0.42 -0.04 16 36 H 0.08 0.40 5.59 -51.93 -0.29 0.11 16 37 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 38 H 0.13 0.98 6.41 -52.48 -0.34 0.64 16 39 H 0.40 4.14 6.44 -40.82 -0.26 3.88 16 40 H 0.07 1.02 8.00 -51.92 -0.42 0.61 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 2.40 6.51 -51.93 -0.34 2.06 16 44 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 47 H 0.13 1.48 7.65 -52.49 -0.40 1.08 16 48 H 0.07 0.47 8.05 -51.93 -0.42 0.05 16 49 H 0.08 0.42 5.60 -51.93 -0.29 0.13 16 50 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 51 H 0.06 0.33 6.79 -51.93 -0.35 -0.02 16 52 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 412.79 15.07 6.22 6.22 Total: -1.00 -32.32 412.79 -12.00 -44.32 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -8.49 Total: 2.77 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -4.48 Total: -9.87 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.30 Total: -51.11 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.32 -12.00 -44.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979118242.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.481 kcal (2) G-P(sol) polarization free energy of solvation -32.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.18 seconds