Wall clock time and date at job start Wed Apr 1 2020 02:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38255 * 119.99927 * 2 1 4 4 C 1.38222 * 119.99881 * 180.02562 * 3 2 1 5 5 C 1.38248 * 120.00323 * 0.02562 * 4 3 2 6 6 C 1.38214 * 119.99981 * 359.97438 * 5 4 3 7 7 C 1.50694 * 120.00263 * 179.97438 * 6 5 4 8 8 C 1.50695 * 109.47544 * 90.00085 * 7 6 5 9 9 O 1.21285 * 119.99697 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00145 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99894 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.62962 * 35.38646 * 11 10 8 13 13 C 1.53300 * 109.63109 * 274.99853 * 11 10 8 14 14 C 1.52834 * 108.21768 * 176.50238 * 13 11 10 15 15 C 1.50894 * 111.56663 * 59.05747 * 14 13 11 16 16 H 1.09004 * 109.03527 * 186.18244 * 15 14 13 17 17 C 1.53378 * 113.07938 * 65.83257 * 15 14 13 18 18 N 1.47426 * 106.51180 * 212.47038 * 17 15 14 19 19 C 1.36946 * 125.72325 * 179.29313 * 18 17 15 20 20 H 1.07995 * 119.99633 * 180.02562 * 19 18 17 21 21 C 1.38813 * 119.99886 * 0.02639 * 19 18 17 22 22 N 1.31620 * 120.00215 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 119.99889 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46959 * 90.00180 * 23 21 19 25 25 H 1.48503 * 109.47469 * 210.00267 * 23 21 19 26 26 H 1.48505 * 109.47343 * 330.00608 * 23 21 19 27 27 C 1.47624 * 108.55325 * 359.33235 * 18 17 15 28 28 C 1.54063 * 113.56337 * 307.87230 * 15 14 13 29 29 H 1.09002 * 112.60889 * 281.00670 * 28 15 14 30 30 C 1.51228 * 109.82222 * 155.53233 * 11 10 8 31 31 C 1.38217 * 120.00457 * 180.27926 * 2 1 3 32 32 H 1.08998 * 109.47563 * 90.00389 * 1 2 3 33 33 H 1.09003 * 109.46930 * 209.99894 * 1 2 3 34 34 H 1.08994 * 109.47252 * 329.99377 * 1 2 3 35 35 H 1.07998 * 120.00283 * 0.02562 * 3 2 1 36 36 H 1.08001 * 119.99237 * 179.97438 * 4 3 2 37 37 H 1.07998 * 120.00039 * 179.97438 * 5 4 3 38 38 H 1.09004 * 109.47138 * 329.99688 * 7 6 5 39 39 H 1.09000 * 109.47289 * 210.00115 * 7 6 5 40 40 H 0.96997 * 120.00000 * 359.97438 * 10 8 7 41 41 H 1.08998 * 109.71680 * 56.81820 * 13 11 10 42 42 H 1.09008 * 109.74944 * 296.20548 * 13 11 10 43 43 H 1.08994 * 109.06161 * 298.51697 * 14 13 11 44 44 H 1.09002 * 109.00610 * 179.55358 * 14 13 11 45 45 H 1.09003 * 110.04597 * 331.73154 * 17 15 14 46 46 H 1.09000 * 110.04514 * 93.15782 * 17 15 14 47 47 H 0.96996 * 120.00306 * 180.02562 * 22 21 19 48 48 H 1.08993 * 110.43168 * 266.12383 * 27 18 17 49 49 H 1.08998 * 110.43647 * 143.60778 * 27 18 17 50 50 H 1.09001 * 108.73511 * 60.89792 * 30 11 10 51 51 H 1.09000 * 108.86735 * 302.09677 * 30 11 10 52 52 H 1.08006 * 119.99615 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 3.5807 -1.1969 -0.0016 7 6 4.3342 -2.5020 -0.0034 8 6 4.5870 -2.9380 1.4168 9 8 4.1944 -2.2559 2.3396 10 7 5.2503 -4.0855 1.6615 11 6 5.4956 -4.5097 3.0421 12 1 4.6475 -4.2303 3.6672 13 6 6.7678 -3.8363 3.5695 14 6 6.9447 -4.2308 5.0354 15 6 7.0523 -5.7271 5.1981 16 1 7.0661 -5.9691 6.2608 17 6 8.3176 -6.3120 4.5583 18 7 7.9615 -7.6612 4.0829 19 6 8.8008 -8.5283 3.4355 20 1 8.4410 -9.4985 3.1264 21 6 10.1140 -8.1602 3.1768 22 7 10.5526 -6.9780 3.5541 23 14 11.2590 -9.3432 2.2944 24 1 11.1691 -9.1189 0.8292 25 1 12.6545 -9.1110 2.7460 26 1 10.8637 -10.7402 2.6065 27 6 6.5480 -7.9204 4.4208 28 6 5.9060 -6.5040 4.5228 29 1 4.9900 -6.4970 5.1135 30 6 5.6820 -6.0096 3.0924 31 6 2.1981 -1.1969 -0.0058 32 1 -0.3634 -0.0001 -1.0276 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3633 0.8899 0.5139 35 1 1.6582 2.1326 0.0004 36 1 4.1203 2.1327 -0.0010 37 1 5.3517 0.0001 -0.0024 38 1 5.2860 -2.3713 -0.5183 39 1 3.7445 -3.2613 -0.5170 40 1 5.5646 -4.6308 0.9234 41 1 6.6712 -2.7536 3.4891 42 1 7.6290 -4.1723 2.9918 43 1 6.0888 -3.8712 5.6065 44 1 7.8512 -3.7647 5.4215 45 1 8.6333 -5.6914 3.7196 46 1 9.1158 -6.3742 5.2981 47 1 11.4701 -6.7206 3.3729 48 1 6.4744 -8.4412 5.3755 49 1 6.0682 -8.4998 3.6321 50 1 6.5450 -6.2758 2.4821 51 1 4.7930 -6.4892 2.6827 52 1 1.6581 -2.1323 -0.0100 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980161206.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:12 Heat of formation + Delta-G solvation = -6.523902 kcal Electronic energy + Delta-G solvation = -29952.745197 eV Core-core repulsion = 26109.497482 eV Total energy + Delta-G solvation = -3843.247715 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.30508 -39.50380 -38.53603 -35.42044 -33.66152 -33.38211 -32.19262 -31.83923 -30.45566 -28.98447 -27.77263 -26.96548 -26.01307 -24.88593 -22.54679 -22.13484 -21.81271 -20.81442 -20.28294 -19.69799 -18.17985 -16.93770 -16.77392 -16.66008 -16.00186 -15.82763 -15.21144 -14.82720 -14.75939 -14.54785 -14.07901 -13.92375 -13.67987 -13.48985 -13.42556 -13.27688 -13.09124 -12.63691 -12.40512 -12.18572 -12.07759 -11.99772 -11.99286 -11.64960 -11.27052 -11.21550 -11.14969 -11.11493 -11.04050 -10.84945 -10.57156 -10.51318 -10.00311 -9.96768 -9.76203 -9.65499 -9.47446 -9.41011 -8.90077 -8.78115 -8.70634 -8.57234 -6.79757 -5.70031 -3.02803 1.20098 1.27931 2.72623 3.23584 3.38621 3.44375 3.46149 3.71759 4.46050 4.50295 4.60937 4.73477 4.90520 4.96338 5.03035 5.09405 5.12204 5.16519 5.31949 5.34389 5.35675 5.37492 5.51210 5.52620 5.53743 5.60522 5.64771 5.68700 5.79686 5.91190 5.93000 5.97633 5.98405 6.01247 6.12336 6.32734 6.36061 6.41590 6.42065 6.47192 6.50891 6.55483 6.64073 6.70803 6.72285 6.78596 6.88429 6.91362 7.05118 7.59514 7.64294 7.68395 7.87230 8.26875 8.33949 9.23207 9.83832 10.51607 11.41447 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018432 B = 0.002244 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.719039 B =12476.228918 C =12908.709285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.124 4.124 4 C -0.116 4.116 5 C -0.110 4.110 6 C -0.057 4.057 7 C -0.106 4.106 8 C 0.514 3.486 9 O -0.535 6.535 10 N -0.724 5.724 11 C 0.150 3.850 12 H 0.080 0.920 13 C -0.125 4.125 14 C -0.095 4.095 15 C -0.114 4.114 16 H 0.058 0.942 17 C 0.186 3.814 18 N -0.605 5.605 19 C -0.225 4.225 20 H 0.076 0.924 21 C -0.009 4.009 22 N -0.921 5.921 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.137 3.863 28 C -0.091 4.091 29 H 0.074 0.926 30 C -0.114 4.114 31 C -0.106 4.106 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.400 0.600 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.053 0.947 44 H 0.062 0.938 45 H 0.049 0.951 46 H 0.039 0.961 47 H 0.251 0.749 48 H 0.017 0.983 49 H 0.039 0.961 50 H 0.084 0.916 51 H 0.054 0.946 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.751 13.017 -7.669 22.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.142 4.142 4 C -0.134 4.134 5 C -0.128 4.128 6 C -0.058 4.058 7 C -0.146 4.146 8 C 0.299 3.701 9 O -0.411 6.411 10 N -0.374 5.374 11 C 0.046 3.954 12 H 0.098 0.902 13 C -0.163 4.163 14 C -0.133 4.133 15 C -0.133 4.133 16 H 0.076 0.924 17 C 0.062 3.938 18 N -0.332 5.332 19 C -0.354 4.354 20 H 0.094 0.906 21 C -0.205 4.205 22 N -0.568 5.568 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C 0.011 3.989 28 C -0.111 4.111 29 H 0.092 0.908 30 C -0.152 4.152 31 C -0.124 4.124 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.234 0.766 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.067 0.933 46 H 0.057 0.943 47 H 0.061 0.939 48 H 0.035 0.965 49 H 0.057 0.943 50 H 0.103 0.897 51 H 0.073 0.927 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.800 13.481 -7.058 22.667 hybrid contribution 1.010 -0.934 -0.741 1.563 sum -15.790 12.547 -7.799 21.624 Atomic orbital electron populations 1.20776 0.91309 1.02798 1.02114 1.19854 0.95965 0.93130 0.99863 1.20994 0.94291 0.97361 1.01533 1.21072 0.94289 0.97869 1.00138 1.20976 0.99765 0.92003 1.00098 1.19262 0.93476 0.93677 0.99379 1.20715 1.02316 0.96192 0.95358 1.20432 0.77736 0.80944 0.90962 1.90718 1.50919 1.53401 1.46089 1.46175 1.57860 1.23927 1.09478 1.20682 0.98098 0.95013 0.81576 0.90189 1.21915 0.97807 0.99505 0.97079 1.20807 1.01128 0.95707 0.95672 1.21674 0.97928 0.94000 0.99705 0.92397 1.21056 0.90550 0.85203 0.96998 1.44603 1.06086 1.14821 1.67665 1.19044 0.91235 0.95990 1.29111 0.90617 1.24777 0.97152 0.97146 1.01460 1.69965 1.15960 1.19396 1.51527 0.86162 0.80461 0.80120 0.79268 1.21728 1.21759 1.20798 1.21827 0.86579 0.93315 0.97189 1.22199 0.97053 0.97298 0.94566 0.90812 1.21416 1.02409 0.92883 0.98477 1.20840 0.93369 0.97573 1.00619 0.91310 0.91560 0.91625 0.86343 0.86130 0.86239 0.87888 0.88053 0.76650 0.92400 0.90735 0.92863 0.91940 0.93277 0.94325 0.93859 0.96526 0.94308 0.89730 0.92707 0.86356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 36.00 0.36 -0.47 16 2 C -0.09 -0.88 5.88 -104.63 -0.62 -1.50 16 3 C -0.12 -1.20 9.70 -39.58 -0.38 -1.59 16 4 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 5 C -0.11 -1.21 9.70 -39.59 -0.38 -1.60 16 6 C -0.06 -0.64 4.37 -104.63 -0.46 -1.10 16 7 C -0.11 -1.03 5.83 -29.04 -0.17 -1.20 16 8 C 0.51 6.82 7.79 -10.99 -0.09 6.73 16 9 O -0.53 -9.25 15.71 5.55 0.09 -9.16 16 10 N -0.72 -9.22 5.09 -54.53 -0.28 -9.50 16 11 C 0.15 2.24 2.38 -68.67 -0.16 2.08 16 12 H 0.08 1.28 7.60 -51.93 -0.39 0.89 16 13 C -0.12 -2.02 5.42 -26.66 -0.14 -2.17 16 14 C -0.09 -1.55 5.35 -27.87 -0.15 -1.70 16 15 C -0.11 -2.10 2.69 -90.93 -0.24 -2.34 16 16 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 17 C 0.19 4.38 4.39 -3.34 -0.01 4.37 16 18 N -0.61 -14.94 2.97 -169.57 -0.50 -15.45 16 19 C -0.23 -6.13 10.29 -15.05 -0.15 -6.29 16 20 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 21 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 22 N -0.92 -26.57 10.34 55.49 0.57 -26.00 16 23 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 C 0.14 2.76 6.52 -1.91 -0.01 2.75 16 28 C -0.09 -1.54 3.69 -88.55 -0.33 -1.87 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 C -0.11 -1.79 4.23 -27.63 -0.12 -1.91 16 31 C -0.11 -1.14 9.36 -39.58 -0.37 -1.52 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 34 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 35 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 38 H 0.10 0.81 8.09 -51.93 -0.42 0.39 16 39 H 0.10 0.75 8.08 -51.93 -0.42 0.33 16 40 H 0.40 4.25 8.60 -40.82 -0.35 3.90 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 1.36 6.75 -51.92 -0.35 1.00 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.05 1.26 5.78 -51.93 -0.30 0.96 16 46 H 0.04 1.04 7.50 -51.93 -0.39 0.65 16 47 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.04 0.75 8.00 -51.93 -0.42 0.34 16 50 H 0.08 1.58 7.24 -51.93 -0.38 1.20 16 51 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 52 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 405.45 15.07 6.11 6.11 Total: -1.00 -32.45 405.45 -11.84 -44.28 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -8.88 Total: 4.15 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -3.93 Total: -11.24 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.21 Total: -50.95 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.45 -11.84 -44.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980161206.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.761 kcal (2) G-P(sol) polarization free energy of solvation -32.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds