Wall clock time and date at job start Wed Apr 1 2020 02:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38261 * 120.00014 * 2 1 4 4 C 1.38212 * 120.00176 * 180.02562 * 3 2 1 5 5 C 1.38254 * 119.99804 * 359.97438 * 4 3 2 6 6 C 1.38212 * 119.99842 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.99633 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47355 * 90.00192 * 7 6 5 9 9 O 1.21283 * 119.99488 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00290 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 7 12 12 H 1.08999 * 109.03843 * 34.71924 * 11 10 8 13 13 C 1.52529 * 109.04497 * 275.75592 * 11 10 8 14 14 C 1.53810 * 111.70965 * 293.49715 * 13 11 10 15 15 C 1.51618 * 107.03089 * 302.45422 * 14 13 11 16 16 H 1.09004 * 110.50969 * 304.78557 * 15 14 13 17 17 C 1.53062 * 116.67092 * 176.22406 * 15 14 13 18 18 N 1.48658 * 103.44572 * 204.13464 * 17 15 14 19 19 C 1.36943 * 125.78468 * 204.34063 * 18 17 15 20 20 H 1.07995 * 120.00144 * 180.02562 * 19 18 17 21 21 C 1.38809 * 119.99643 * 0.04046 * 19 18 17 22 22 N 1.31625 * 120.00223 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99875 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46975 * 60.00551 * 23 21 19 25 25 H 1.48507 * 109.47225 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47332 * 300.00366 * 23 21 19 27 27 C 1.48241 * 108.43636 * 24.37578 * 18 17 15 28 28 C 1.52329 * 105.85867 * 3.18841 * 27 18 17 29 29 H 1.09003 * 109.87906 * 87.66100 * 28 27 18 30 30 C 1.51287 * 117.47691 * 214.68543 * 28 27 18 31 31 C 1.38206 * 120.00166 * 180.27745 * 2 1 3 32 32 H 1.09002 * 109.47089 * 89.99573 * 1 2 3 33 33 H 1.08996 * 109.47038 * 210.00167 * 1 2 3 34 34 H 1.09007 * 109.47214 * 330.00339 * 1 2 3 35 35 H 1.07999 * 119.99538 * 0.02562 * 3 2 1 36 36 H 1.08002 * 120.00022 * 179.97438 * 4 3 2 37 37 H 1.08000 * 120.00012 * 179.97438 * 5 4 3 38 38 H 1.08998 * 109.47477 * 330.00037 * 7 6 5 39 39 H 1.09002 * 109.47412 * 210.00296 * 7 6 5 40 40 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 41 41 H 1.09004 * 109.03085 * 54.06540 * 13 11 10 42 42 H 1.08997 * 109.03409 * 172.99489 * 13 11 10 43 43 H 1.08999 * 109.94768 * 61.83596 * 14 13 11 44 44 H 1.08999 * 109.94212 * 182.99374 * 14 13 11 45 45 H 1.08996 * 110.62461 * 322.62648 * 17 15 14 46 46 H 1.08999 * 110.62497 * 85.64737 * 17 15 14 47 47 H 0.97007 * 119.99526 * 179.97438 * 22 21 19 48 48 H 1.08997 * 110.17229 * 244.08965 * 27 18 17 49 49 H 1.08998 * 110.17271 * 122.28314 * 27 18 17 50 50 H 1.08994 * 109.95851 * 59.39790 * 30 28 27 51 51 H 1.08997 * 109.85139 * 298.20317 * 30 28 27 52 52 H 1.07997 * 119.99991 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5805 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 3.5806 -1.1968 -0.0005 7 6 4.3342 -2.5019 -0.0011 8 6 4.5859 -2.9373 1.4195 9 8 4.1925 -2.2548 2.3416 10 7 5.2490 -4.0847 1.6653 11 6 5.4883 -4.5109 3.0463 12 1 4.6373 -4.2183 3.6613 13 6 6.7425 -3.8190 3.5705 14 6 8.0051 -4.2931 2.8310 15 6 8.0831 -5.7972 3.0048 16 1 8.0611 -6.0611 4.0622 17 6 9.2204 -6.5152 2.2742 18 7 8.7118 -7.9039 2.1231 19 6 9.4814 -9.0265 1.9719 20 1 9.0116 -9.9935 1.8691 21 6 10.8654 -8.9215 1.9509 22 7 11.4380 -7.7430 2.0770 23 14 11.9152 -10.4529 1.7453 24 1 11.5858 -11.1092 0.4547 25 1 13.3511 -10.0738 1.7560 26 1 11.6436 -11.3929 2.8623 27 6 7.2304 -7.8676 2.1631 28 6 6.8526 -6.3953 2.2632 29 1 6.7752 -5.9638 1.2653 30 6 5.6301 -6.0425 3.0816 31 6 2.1981 -1.1969 -0.0058 32 1 -0.3633 0.0001 -1.0277 33 1 -0.3633 -0.8899 0.5138 34 1 -0.3634 0.8901 0.5138 35 1 1.6583 2.1326 0.0004 36 1 4.1205 2.1328 -0.0010 37 1 5.3517 0.0001 -0.0014 38 1 5.2864 -2.3715 -0.5153 39 1 3.7450 -3.2615 -0.5149 40 1 5.5639 -4.6304 0.9277 41 1 6.6362 -2.7423 3.4379 42 1 6.8511 -4.0371 4.6329 43 1 7.9313 -4.0445 1.7723 44 1 8.8879 -3.8215 3.2627 45 1 9.3961 -6.0624 1.2984 46 1 10.1304 -6.5027 2.8740 47 1 12.4052 -7.6698 2.0627 48 1 6.8645 -8.4097 3.0350 49 1 6.8190 -8.3000 1.2510 50 1 5.7605 -6.3801 4.1097 51 1 4.7460 -6.5077 2.6457 52 1 1.6582 -2.1322 -0.0099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980161212.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:16 Heat of formation + Delta-G solvation = -0.724064 kcal Electronic energy + Delta-G solvation = -29807.852913 eV Core-core repulsion = 25964.856698 eV Total energy + Delta-G solvation = -3842.996215 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.51099 -39.59482 -38.47636 -35.63994 -33.69674 -33.20921 -32.22911 -31.82634 -30.67507 -29.05683 -27.86789 -27.00431 -26.17734 -25.03683 -22.53941 -21.98208 -21.74859 -20.58588 -20.33755 -19.78942 -18.89158 -17.20941 -16.74881 -16.67775 -16.02357 -15.85742 -15.06604 -14.97633 -14.81003 -14.36316 -14.22147 -13.96910 -13.80219 -13.53723 -13.39077 -13.23600 -13.17230 -12.65680 -12.62420 -12.40696 -12.21240 -12.07319 -11.95121 -11.88866 -11.47675 -11.26607 -11.16901 -11.16318 -10.99941 -10.86280 -10.73044 -10.62458 -10.07942 -9.92763 -9.87723 -9.82668 -9.53396 -9.23537 -8.93891 -8.89423 -8.74298 -8.65111 -6.82777 -5.64076 -3.05088 1.16844 1.24801 2.64759 3.17118 3.40402 3.44619 3.45927 3.67731 4.42297 4.48237 4.57660 4.70314 4.77338 4.88191 4.92838 4.97820 5.04430 5.07163 5.09865 5.29540 5.31641 5.33454 5.34200 5.36258 5.48490 5.52363 5.57578 5.65693 5.68710 5.74894 5.84702 5.88722 5.94623 6.03155 6.15669 6.20052 6.25630 6.25934 6.29681 6.38739 6.39721 6.43944 6.52768 6.60241 6.65459 6.67101 6.84747 6.85528 7.02694 7.52769 7.54561 7.61866 7.86782 8.24709 8.34385 9.21150 9.82475 10.49155 11.40165 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.025332 B = 0.002018 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.037722 B =13874.746007 C =14011.837384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.124 4.124 4 C -0.115 4.115 5 C -0.110 4.110 6 C -0.057 4.057 7 C -0.106 4.106 8 C 0.514 3.486 9 O -0.536 6.536 10 N -0.722 5.722 11 C 0.152 3.848 12 H 0.081 0.919 13 C -0.126 4.126 14 C -0.099 4.099 15 C -0.114 4.114 16 H 0.069 0.931 17 C 0.164 3.836 18 N -0.608 5.608 19 C -0.221 4.221 20 H 0.076 0.924 21 C -0.013 4.013 22 N -0.923 5.923 23 Si 0.913 3.087 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.286 1.286 27 C 0.143 3.857 28 C -0.107 4.107 29 H 0.064 0.936 30 C -0.109 4.109 31 C -0.106 4.106 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.401 0.599 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.012 0.988 46 H 0.103 0.897 47 H 0.252 0.748 48 H 0.022 0.978 49 H 0.023 0.977 50 H 0.079 0.921 51 H 0.065 0.935 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.547 15.399 -4.145 24.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.142 4.142 4 C -0.133 4.133 5 C -0.128 4.128 6 C -0.058 4.058 7 C -0.146 4.146 8 C 0.300 3.700 9 O -0.413 6.413 10 N -0.375 5.375 11 C 0.048 3.952 12 H 0.100 0.900 13 C -0.165 4.165 14 C -0.137 4.137 15 C -0.134 4.134 16 H 0.088 0.912 17 C 0.040 3.960 18 N -0.334 5.334 19 C -0.349 4.349 20 H 0.094 0.906 21 C -0.208 4.208 22 N -0.571 5.571 23 Si 0.744 3.256 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.018 3.982 28 C -0.126 4.126 29 H 0.082 0.918 30 C -0.147 4.147 31 C -0.124 4.124 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.237 0.763 41 H 0.079 0.921 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.030 0.970 46 H 0.121 0.879 47 H 0.062 0.938 48 H 0.040 0.960 49 H 0.041 0.959 50 H 0.098 0.902 51 H 0.083 0.917 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.602 15.810 -3.482 24.660 hybrid contribution 0.806 -1.092 -0.542 1.461 sum -17.796 14.718 -4.023 23.441 Atomic orbital electron populations 1.20781 0.91301 1.02779 1.02145 1.19856 0.95969 0.93127 0.99841 1.20997 0.94296 0.97370 1.01503 1.21072 0.94285 0.97876 1.00112 1.20978 0.99768 0.92001 1.00098 1.19251 0.93462 0.93646 0.99432 1.20716 1.02402 0.96241 0.95271 1.20456 0.77575 0.80933 0.91021 1.90713 1.50992 1.53449 1.46153 1.46267 1.57864 1.23933 1.09432 1.21028 0.97862 0.94072 0.82284 0.90049 1.21914 0.94503 0.99894 1.00161 1.21255 0.96483 0.96011 0.99938 1.22400 0.97491 0.93642 0.99843 0.91242 1.21619 0.95231 0.82255 0.96912 1.45120 0.98749 1.03631 1.85939 1.19036 0.87975 0.85856 1.42056 0.90650 1.24775 0.96446 0.96962 1.02631 1.69811 1.09027 1.21054 1.57249 0.86172 0.79515 0.81997 0.77919 1.21291 1.21606 1.21225 1.20973 0.86687 0.92885 0.97688 1.21748 0.95007 0.97588 0.98251 0.91789 1.21567 0.98338 0.93294 1.01544 1.20834 0.93368 0.97574 1.00638 0.91286 0.91571 0.91628 0.86338 0.86123 0.86233 0.87829 0.88004 0.76341 0.92056 0.91448 0.92375 0.91987 0.97042 0.87877 0.93765 0.95971 0.95927 0.90239 0.91678 0.86361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.01 0.36 -0.43 16 2 C -0.09 -0.85 5.88 -104.62 -0.62 -1.46 16 3 C -0.12 -1.16 9.70 -39.58 -0.38 -1.54 16 4 C -0.12 -1.12 10.05 -39.59 -0.40 -1.51 16 5 C -0.11 -1.16 9.70 -39.58 -0.38 -1.55 16 6 C -0.06 -0.61 4.37 -104.63 -0.46 -1.07 16 7 C -0.11 -0.98 5.83 -29.03 -0.17 -1.15 16 8 C 0.51 6.27 7.74 -10.98 -0.09 6.19 16 9 O -0.54 -8.60 15.68 5.55 0.09 -8.51 16 10 N -0.72 -8.21 4.66 -53.61 -0.25 -8.46 16 11 C 0.15 1.91 2.70 -67.73 -0.18 1.72 16 12 H 0.08 1.09 7.55 -51.93 -0.39 0.69 16 13 C -0.13 -1.70 5.42 -26.55 -0.14 -1.84 16 14 C -0.10 -1.49 5.57 -27.01 -0.15 -1.64 16 15 C -0.11 -2.05 2.50 -89.90 -0.22 -2.27 16 16 H 0.07 1.30 8.01 -51.93 -0.42 0.88 16 17 C 0.16 3.87 5.53 -2.82 -0.02 3.85 16 18 N -0.61 -15.31 3.45 -170.42 -0.59 -15.89 16 19 C -0.22 -6.12 10.30 -15.06 -0.16 -6.27 16 20 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 21 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 22 N -0.92 -26.76 10.11 55.49 0.56 -26.20 16 23 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 C 0.14 2.87 6.98 -3.43 -0.02 2.84 16 28 C -0.11 -1.70 2.23 -90.43 -0.20 -1.90 16 29 H 0.06 0.98 6.13 -51.93 -0.32 0.66 16 30 C -0.11 -1.40 5.36 -27.15 -0.15 -1.55 16 31 C -0.11 -1.10 9.36 -39.59 -0.37 -1.47 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 34 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 35 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.10 0.79 8.09 -51.93 -0.42 0.37 16 39 H 0.10 0.72 8.08 -51.93 -0.42 0.30 16 40 H 0.40 4.05 6.82 -40.82 -0.28 3.77 16 41 H 0.06 0.87 8.11 -51.93 -0.42 0.45 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.87 7.84 -51.93 -0.41 0.46 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.10 2.78 5.93 -51.93 -0.31 2.47 16 47 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 48 H 0.02 0.45 8.08 -51.93 -0.42 0.03 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.08 1.03 8.03 -51.93 -0.42 0.61 16 51 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 52 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 405.54 15.07 6.11 6.11 Total: -1.00 -32.60 405.54 -11.77 -44.38 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -8.83 Total: 3.09 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -3.84 Total: -11.50 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.28 Total: -50.55 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.09 Total: -8.51 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.60 -11.77 -44.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980161212.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.652 kcal (2) G-P(sol) polarization free energy of solvation -32.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds