Wall clock time and date at job start Wed Apr 1 2020 02:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38256 * 120.00155 * 2 1 4 4 C 1.38211 * 120.00094 * 179.97438 * 3 2 1 5 5 C 1.38255 * 120.00068 * 359.79217 * 4 3 2 6 6 C 1.38211 * 119.99927 * 0.48175 * 5 4 3 7 7 C 1.50698 * 120.00020 * 179.77420 * 6 5 4 8 8 C 1.50703 * 109.46781 * 269.72031 * 7 6 5 9 9 O 1.21283 * 119.99752 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00319 * 179.97438 * 8 7 6 11 11 C 1.46493 * 120.00312 * 180.27842 * 10 8 7 12 12 H 1.09004 * 109.03143 * 33.68211 * 11 10 8 13 13 C 1.52526 * 109.04153 * 274.72788 * 11 10 8 14 14 C 1.53822 * 111.70238 * 185.39592 * 13 11 10 15 15 C 1.51623 * 107.01733 * 57.53408 * 14 13 11 16 16 H 1.09000 * 110.50240 * 56.32757 * 15 14 13 17 17 C 1.53055 * 116.67893 * 183.73249 * 15 14 13 18 18 N 1.48655 * 103.44683 * 155.88880 * 17 15 14 19 19 C 1.36943 * 125.78319 * 155.65662 * 18 17 15 20 20 H 1.07996 * 120.00086 * 355.58447 * 19 18 17 21 21 C 1.38807 * 120.00040 * 175.58882 * 19 18 17 22 22 N 1.31629 * 119.99910 * 7.33132 * 21 19 18 23 23 Si 1.86793 * 120.00239 * 187.33227 * 21 19 18 24 24 H 1.48498 * 109.47367 * 94.98794 * 23 21 19 25 25 H 1.48506 * 109.47408 * 214.98684 * 23 21 19 26 26 H 1.48506 * 109.47133 * 334.98468 * 23 21 19 27 27 C 1.48242 * 108.43247 * 335.62139 * 18 17 15 28 28 C 1.52327 * 105.86341 * 356.81492 * 27 18 17 29 29 H 1.08999 * 109.88965 * 272.32107 * 28 27 18 30 30 C 1.51449 * 117.44350 * 145.30554 * 28 27 18 31 31 C 1.38220 * 120.00071 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.47733 * 269.98004 * 1 2 3 33 33 H 1.09002 * 109.47008 * 29.98312 * 1 2 3 34 34 H 1.09003 * 109.47215 * 149.97812 * 1 2 3 35 35 H 1.08004 * 119.99671 * 359.97438 * 3 2 1 36 36 H 1.08001 * 119.99692 * 180.02562 * 4 3 2 37 37 H 1.07997 * 120.00276 * 180.25406 * 5 4 3 38 38 H 1.09003 * 109.47203 * 149.72769 * 7 6 5 39 39 H 1.08995 * 109.47581 * 29.72204 * 7 6 5 40 40 H 0.97006 * 119.99632 * 0.02562 * 10 8 7 41 41 H 1.08995 * 109.03357 * 305.96729 * 13 11 10 42 42 H 1.09000 * 109.03214 * 64.82848 * 13 11 10 43 43 H 1.08992 * 109.94503 * 176.90981 * 14 13 11 44 44 H 1.09002 * 109.94312 * 298.15925 * 14 13 11 45 45 H 1.09004 * 110.62782 * 274.38035 * 17 15 14 46 46 H 1.09007 * 110.63010 * 37.39615 * 17 15 14 47 47 H 0.96992 * 119.99978 * 179.97438 * 22 21 19 48 48 H 1.08996 * 110.17024 * 115.91528 * 27 18 17 49 49 H 1.08997 * 110.17074 * 237.71704 * 27 18 17 50 50 H 1.08995 * 109.94274 * 61.85412 * 30 28 27 51 51 H 1.09001 * 109.94029 * 300.61637 * 30 28 27 52 52 H 1.07995 * 119.99419 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0054 6 6 3.5806 -1.1969 -0.0003 7 6 4.3341 -2.5020 -0.0001 8 6 4.5853 -2.9372 -1.4209 9 8 4.1916 -2.2544 -2.3428 10 7 5.2483 -4.0845 -1.6672 11 6 5.4978 -4.5044 -3.0483 12 1 5.6506 -3.6198 -3.6667 13 6 4.2820 -5.2677 -3.5637 14 6 4.5297 -5.8531 -4.9645 15 6 5.7495 -6.7479 -4.8621 16 1 5.6003 -7.5107 -4.0980 17 6 6.2486 -7.3808 -6.1632 18 7 7.6832 -7.6546 -5.8864 19 6 8.4518 -8.6027 -6.5074 20 1 8.0040 -9.2784 -7.2209 21 6 9.8066 -8.6954 -6.2196 22 7 10.3241 -7.9729 -5.2486 23 14 10.8954 -9.8453 -7.2102 24 1 11.5427 -9.0879 -8.3114 25 1 11.9395 -10.4226 -6.3260 26 1 10.0695 -10.9397 -7.7809 27 6 8.1411 -6.7267 -4.8248 28 6 6.9533 -5.8225 -4.5214 29 1 6.9615 -4.9624 -5.1909 30 6 6.7699 -5.3686 -3.0882 31 6 2.1981 -1.1970 -0.0005 32 1 -0.3634 -0.0004 1.0276 33 1 -0.3633 0.8902 -0.5136 34 1 -0.3634 -0.8898 -0.5142 35 1 1.6582 2.1326 -0.0004 36 1 4.1203 2.1326 0.0010 37 1 5.3516 0.0000 0.0100 38 1 3.7450 -3.2617 0.5137 39 1 5.2865 -2.3717 0.5137 40 1 5.5635 -4.6303 -0.9299 41 1 4.0540 -6.0804 -2.8741 42 1 3.4292 -4.5903 -3.6073 43 1 3.6658 -6.4371 -5.2815 44 1 4.7173 -5.0487 -5.6757 45 1 5.7135 -8.3079 -6.3692 46 1 6.1441 -6.6833 -6.9944 47 1 11.2706 -8.0379 -5.0473 48 1 8.4251 -7.2861 -3.9335 49 1 8.9833 -6.1338 -5.1814 50 1 7.6301 -4.7786 -2.7721 51 1 6.6518 -6.2341 -2.4363 52 1 1.6580 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980161218.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:20 Heat of formation + Delta-G solvation = -4.892571 kcal Electronic energy + Delta-G solvation = -29389.892559 eV Core-core repulsion = 25546.715583 eV Total energy + Delta-G solvation = -3843.176975 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.40271 -39.53028 -38.59272 -35.66557 -33.75377 -33.51968 -32.26165 -31.55839 -30.91879 -28.97418 -27.76495 -27.03373 -26.16918 -24.87955 -22.52551 -22.00543 -21.68896 -20.51696 -20.32586 -19.82120 -19.26453 -17.21393 -16.74282 -16.68949 -15.99885 -15.96233 -14.99591 -14.95054 -14.71582 -14.35208 -14.11512 -14.06681 -13.97660 -13.70153 -13.41309 -13.39744 -13.16987 -12.71488 -12.43607 -12.30871 -12.11445 -12.09722 -12.00576 -11.79896 -11.62829 -11.29435 -11.19876 -11.12903 -10.99690 -10.83124 -10.63478 -10.51571 -10.14443 -9.97706 -9.84876 -9.81004 -9.51583 -9.43821 -8.97468 -8.91468 -8.77839 -8.55709 -6.79424 -5.69011 -2.99982 1.12962 1.21342 2.59542 3.10044 3.42020 3.47318 3.48997 3.63199 4.36929 4.51944 4.53585 4.67166 4.75012 4.88981 4.91472 4.92426 4.99822 5.06270 5.19260 5.22630 5.28056 5.31874 5.33360 5.41556 5.45321 5.54455 5.55668 5.66939 5.69240 5.70885 5.81919 5.85017 5.91381 6.06473 6.19984 6.23822 6.26116 6.27801 6.32536 6.35070 6.40055 6.43268 6.45902 6.52916 6.60925 6.68492 6.81623 6.86549 7.07945 7.47809 7.57431 7.66183 7.84584 8.20168 8.25804 9.23389 9.84386 10.53028 11.43684 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.028923 B = 0.001877 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.861379 B =14917.554306 C =15480.875017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.123 4.123 4 C -0.115 4.115 5 C -0.111 4.111 6 C -0.059 4.059 7 C -0.105 4.105 8 C 0.512 3.488 9 O -0.532 6.532 10 N -0.727 5.727 11 C 0.147 3.853 12 H 0.084 0.916 13 C -0.122 4.122 14 C -0.100 4.100 15 C -0.107 4.107 16 H 0.073 0.927 17 C 0.140 3.860 18 N -0.610 5.610 19 C -0.224 4.224 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.190 3.810 28 C -0.114 4.114 29 H 0.065 0.935 30 C -0.103 4.103 31 C -0.106 4.106 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.399 0.601 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.038 0.962 46 H 0.021 0.979 47 H 0.251 0.749 48 H 0.038 0.962 49 H 0.050 0.950 50 H 0.067 0.933 51 H 0.068 0.932 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.871 14.847 15.178 27.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.087 4.087 3 C -0.141 4.141 4 C -0.133 4.133 5 C -0.129 4.129 6 C -0.060 4.060 7 C -0.145 4.145 8 C 0.298 3.702 9 O -0.408 6.408 10 N -0.378 5.378 11 C 0.043 3.957 12 H 0.102 0.898 13 C -0.161 4.161 14 C -0.139 4.139 15 C -0.126 4.126 16 H 0.092 0.908 17 C 0.015 3.985 18 N -0.337 5.337 19 C -0.353 4.353 20 H 0.095 0.905 21 C -0.206 4.206 22 N -0.570 5.570 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.219 1.219 26 H -0.207 1.207 27 C 0.066 3.934 28 C -0.133 4.133 29 H 0.084 0.916 30 C -0.142 4.142 31 C -0.124 4.124 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.233 0.767 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.056 0.944 46 H 0.039 0.961 47 H 0.061 0.939 48 H 0.056 0.944 49 H 0.068 0.932 50 H 0.086 0.914 51 H 0.086 0.914 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.935 15.262 14.502 27.019 hybrid contribution 0.904 -0.894 -0.152 1.280 sum -16.032 14.368 14.350 25.872 Atomic orbital electron populations 1.20784 0.91266 1.02852 1.02146 1.19864 0.96003 0.93118 0.99746 1.21007 0.94302 0.97403 1.01393 1.21074 0.94296 0.97881 1.00074 1.20968 0.99716 0.92015 1.00207 1.19247 0.93486 0.93631 0.99614 1.20708 1.02294 0.96278 0.95184 1.20492 0.77859 0.80775 0.91060 1.90734 1.50138 1.53730 1.46176 1.46207 1.58259 1.23943 1.09383 1.21135 0.94761 0.98044 0.81722 0.89800 1.21856 0.97573 0.99370 0.97256 1.21295 0.98016 0.98714 0.95870 1.22094 0.94031 0.96942 0.99576 0.90828 1.21326 0.86580 0.96803 0.93819 1.45100 1.05207 1.40082 1.43293 1.19086 0.89752 1.08423 1.18004 0.90486 1.24791 0.96785 1.00122 0.98940 1.69973 1.12054 1.44054 1.30873 0.86134 0.80539 0.79942 0.79399 1.21708 1.21858 1.20700 1.20783 0.91222 0.89721 0.91689 1.22047 0.98298 0.98475 0.94527 0.91637 1.21493 0.95534 0.98982 0.98172 1.20838 0.93361 0.97592 1.00577 0.91279 0.91587 0.91532 0.86298 0.86104 0.86262 0.88022 0.87912 0.76703 0.92244 0.92142 0.91995 0.91767 0.94390 0.96146 0.93872 0.94425 0.93198 0.91422 0.91367 0.86353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.78 10.01 36.00 0.36 -0.41 16 2 C -0.09 -0.82 5.88 -104.62 -0.62 -1.43 16 3 C -0.12 -1.11 9.70 -39.58 -0.38 -1.50 16 4 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 5 C -0.11 -1.11 9.70 -39.59 -0.38 -1.49 16 6 C -0.06 -0.60 4.37 -104.63 -0.46 -1.06 16 7 C -0.10 -0.86 5.83 -29.03 -0.17 -1.03 16 8 C 0.51 6.01 7.78 -10.98 -0.09 5.93 16 9 O -0.53 -8.59 15.66 5.56 0.09 -8.50 16 10 N -0.73 -7.71 5.03 -53.62 -0.27 -7.98 16 11 C 0.15 1.94 2.45 -67.74 -0.17 1.77 16 12 H 0.08 1.29 7.51 -51.93 -0.39 0.90 16 13 C -0.12 -1.59 5.38 -26.55 -0.14 -1.73 16 14 C -0.10 -1.42 5.71 -27.00 -0.15 -1.58 16 15 C -0.11 -1.84 2.47 -89.90 -0.22 -2.06 16 16 H 0.07 1.30 8.06 -51.93 -0.42 0.88 16 17 C 0.14 2.92 6.89 -2.82 -0.02 2.90 16 18 N -0.61 -15.69 3.45 -170.42 -0.59 -16.28 16 19 C -0.22 -6.32 10.29 -15.06 -0.15 -6.48 16 20 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 21 C -0.01 -0.30 5.48 -17.43 -0.10 -0.39 16 22 N -0.92 -27.16 10.41 55.49 0.58 -26.58 16 23 Si 0.91 22.29 29.56 -169.99 -5.02 17.26 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 C 0.19 4.55 5.08 -3.43 -0.02 4.53 16 28 C -0.11 -2.06 2.30 -90.35 -0.21 -2.27 16 29 H 0.07 1.21 7.93 -51.93 -0.41 0.80 16 30 C -0.10 -1.49 5.17 -27.08 -0.14 -1.63 16 31 C -0.11 -1.05 9.36 -39.58 -0.37 -1.42 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 34 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 35 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 37 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.10 0.61 8.09 -51.93 -0.42 0.19 16 39 H 0.10 0.63 8.08 -51.93 -0.42 0.21 16 40 H 0.40 3.13 8.61 -40.82 -0.35 2.78 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.93 7.99 -51.93 -0.41 0.52 16 45 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 48 H 0.04 0.98 7.65 -51.93 -0.40 0.58 16 49 H 0.05 1.34 7.26 -51.93 -0.38 0.97 16 50 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 51 H 0.07 0.95 8.06 -51.93 -0.42 0.53 16 52 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 410.14 15.07 6.18 6.18 Total: -1.00 -33.74 410.14 -11.92 -45.66 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -9.06 Total: 1.06 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -3.82 Total: -10.82 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.28 Total: -50.84 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.09 Total: -8.50 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.74 -11.92 -45.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980161218.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.763 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds